VFE233
Library VF
(Link to library)
Clone ID VFE233
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16252-1
Original site URL
Representative seq. ID VFE233P
(Link to Original site)
Representative DNA sequence
>VFE233 (VFE233Q) /CSM/VF/VFE2-B/VFE233Q.Seq.d/
ACTTATTACTTTATTTTTTTTTATCTCTATCTATATATATATCATTTTTTAAAATGAGCG
TCATCAAATCAATTAAAGCCAGAGAAATTTTAGATTCACGTGGTAACCCAACTGTTGAAG
TTGACCTTTACACCGAAAAAGATGGTGTTGTTTCATCATTCAGAGCTGCAGTTCCATCAG
GTGCATCAACTGGTATTTATGAAGCTGTTGAATTAAGAGATGGTGATAAATCAAGATACT
TAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTCTCGAAGTCATTCAACCAGCCGTCA
TTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATAAATTAATGATCGATCTCGATGGTA
CCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCCTTGCAGTCAGTTTAGCTGTTTGCA
GAGCTGGTGCTGCTGATAGAAATTTACCACTTTACAAATATATCTCAGAAATTGCAGGTA
CTAAAATGAGATTACCAGTTCCAGCATTCAATGTTATCAATGGTGGTTCACATGCAGGTA
ATAAATTAGCTATGCAAGAATTTATGATTTTACCAXXXXXXXXXXAATGTCATCAGTGGT
AGATACGGTCAAGATGCTATCAATGTTGGTGATGAAGGTGGTTTCGCTCCACCAATTCAA
AGCAACAAAGAAGGTCTTGAACTCTTAAAACTTGCCATTGAAAAAGCTGGTTACACAGGT
TTAGTTAAAATTGGTATGGATTGTGCTGCCTCTGAATTCAAAGTTGAAAATGGTTACGAT
CTTGACTTCAAAACTAAAAACAATGACGGTTCAGCTGTTATCTCTGGTGAAAAATTAGGT
GATCTCTACAGAGAATTCATTAAAGAATATCCAATCATTTCAATTGAAGATCCATTTGAT
CAAGATGATTGGGAATCATACACTAAATTAACAGCATCAGTTGATATTCAAATTGTTGGT
GATGATTTACTTGTTACCAACCCAGAAAGAATTAAGACTGGTATTGAAAAGAAAGCATGT
AATGCTCTTTTATTAAAAGTTAACCAAATTGGTTCAGTCACTGAATCAATTCGTGCCGCT
CTTGACTCAAAGAATGCATCATGGGGTGTCATGGTTAGCCATCGTTCAGGTGAAACTGAA
GATACCTTCATTGCTGATTTAGTTGTTGGTTTAGGTACTGGTCAAATTAAAACTGGTGCT
CCATGTAGATCAGAAAGATTAGCCAAATACAATCAACTTGTTAGAATTAACGAAGAGTTA
GGTGAAAACCATAACTATGCTGGTTTAACTTTCCGTAAATTTTAATTTTACTCATAATAT
GNAAACAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
LLLYFFLSLSIYISFFKMSVIKSIKAREILDSRGNPTVEVDLYTEKDGVVSSFRAAVPSG
ASTGIYEAVELRDGDKSRYLGKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGT
PNKGKLGANAILAVSLAVCRAGAADRNLPLYKYISEIAGTKMRLPVPAFNVINGGSHAGN
KLAMQEFMILP---

---NVISGRYGQDAINVGDEGGFAPPIQSNKEGLELLKLAIEKAGYTGLVKIGMDCAASE
FKVENGYDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQDDWESYTKLTA
SVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQIGSVTESIRAALDSKNASWGVMV
SHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLVRINEELGENHNYAGLTFR
KF*fys*yxnk


Translated Amino Acid sequence (All Frames)
Frame A:
tyyfiffylylyiyhflk*assnqlkpekf*ihvvtqllkltftpkkmvlfhhselqfhq
vhqlvfmklln*emvinqdt*vkvyskqsktfsksfnqpslvnqfpikllsin**sismv
pqikvn*vptlslqsv*lfaelvllieiyhftnisqklqvlk*dyqfqhsmlsmvvhmqv
in*lcknl*fy---

---NVISGRYGQDAINVGDEGGFAPPIQSNKEGLELLKLAIEKAGYTGLVKIGMDCAASE
FKVENGYDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQDDWESYTKLTA
SVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQIGSVTESIRAALDSKNASWGVMV
SHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLVRINEELGENHNYAGLTFR
KF*fys*yxnk

Frame B:
litlfffisiyiyiif*nerhqin*sqrnfrftw*pnc*s*plhrkrwccfiiqscssir
cinwyl*sc*ikrw**ikilr*rctqsnqkhsrshstsrhw*isfrsscyr*indrsrwy
pk*r*ircqrypcsqfsclqswcc**kfttlqiylrncry*neitsssiqcyqwwftcr*
*isyariydft---

---mssvvdtvkmlsmlvmkvvslhqfkatkkvlns*nlplkklvtqv*lklvwivlpln
sklkmvtiltsklktmtvqllslvkn*vistenslkniqsfqlkihlikmignhtln*qh
qlifkllvmiyllptqkelrlvlkrkhvmlfy*kltklvqslnqfvplltqrmhhgvswl
aivqvklkipslli*llv*vlvklklvlhvdqkd*pntinlleltks*vktitmlv*lsv
nfnfthnmxtk

Frame C:
LLLYFFLSLSIYISFFKMSVIKSIKAREILDSRGNPTVEVDLYTEKDGVVSSFRAAVPSG
ASTGIYEAVELRDGDKSRYLGKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGT
PNKGKLGANAILAVSLAVCRAGAADRNLPLYKYISEIAGTKMRLPVPAFNVINGGSHAGN
KLAMQEFMILP---

---chqw*irsrcyqcw**rwfrstnskqqrrs*tlktch*kswlhrfs*nwyglccl*i
qs*kwlrs*lqn*kq*rfscylw*kir*slqrih*risnhfn*rsi*sr*lgiih*insi
s*ysncw**ftcyqprkn*dwy*kesm*csfiks*pnwfsh*inscrs*lkecimgchg*
psfr*n*rylhc*fscwfrywsn*nwcsm*irkisqiqstc*n*rrvr*kp*lcwfnfp*
ililliixkqn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE233 (VFE233Q) /CSM/VF/VFE2-B/VFE233Q.Seq.d/ 2529 0.0
SFE744 (SFE744Q) /CSM/SF/SFE7-B/SFE744Q.Seq.d/ 1473 0.0
CHB226 (CHB226Q) /CSM/CH/CHB2-B/CHB226Q.Seq.d/ 1473 0.0
AFK881 (AFK881Q) /CSM/AF/AFK8-D/AFK881Q.Seq.d/ 1473 0.0
AFG692 (AFG692Q) /CSM/AF/AFG6-D/AFG692Q.Seq.d/ 1473 0.0
SFC169 (SFC169Q) /CSM/SF/SFC1-C/SFC169Q.Seq.d/ 1471 0.0
AFC723 (AFC723Q) /CSM/AF/AFC7-A/AFC723Q.Seq.d/ 1465 0.0
SSI448 (SSI448Q) /CSM/SS/SSI4-B/SSI448Q.Seq.d/ 1459 0.0
SFB846 (SFB846Q) /CSM/SF/SFB8-B/SFB846Q.Seq.d/ 1459 0.0
SFH339 (SFH339Q) /CSM/SF/SFH3-B/SFH339Q.Seq.d/ 1457 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X80474|X80474.1 N.frontalis enolase gene. 64 1e-76 13
Y17298|Y17298.1 Cunninghamella elegans mRNA for enolase. 86 7e-73 11
BD183626|BD183626.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 76 6e-61 10
BD183625|BD183625.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 76 6e-61 10
AB026051|AB026051.1 Plasmodium falciparum mRNA for enolase, complete cds. 76 6e-61 10
U00152|U00152.1 Plasmodium falciparum enolase gene complete cds. 76 6e-59 9
BM165201|BM165201.1 EST567724 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI87 5' end, mRNA sequence. 92 2e-52 5
BM395755|BM395755.1 5009-0-10-H08.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 121 1e-48 5
AF348930|AF348930.1 Tetrahymena bergeri enolase (eno) gene, partial cds. 66 2e-46 6
AX619982|AX619982.1 Sequence 2945 from Patent WO02094868. 50 9e-46 10
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RK5) RecName: Full=Enolase A; EC=4.2.1.11; AltName:... 479 0.0
EF137905_1(EF137905|pid:none) Helianthus annuus plastid enolase ... 352 e-160
AC016662_10(AC016662|pid:none) Arabidopsis thaliana chromosome 1... 345 e-157
FJ979826_1(FJ979826|pid:none) Nicotiana tabacum cultivar Samsun ... 347 e-155
DQ497988_1(DQ497988|pid:none) Polypterus senegalus enolase B mRN... 337 e-154
AK243111_1(AK243111|pid:none) Oryza sativa Japonica Group cDNA, ... 342 e-154
(P26300) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 347 e-154
BC045082_1(BC045082|pid:none) Xenopus laevis enolase 3, beta mus... 330 e-154
BC096516_1(BC096516|pid:none) Xenopus tropicalis hypothetical pr... 330 e-154
T12341(T12341) phosphopyruvate hydratase (EC 4.2.1.11) - common ... 349 e-153
protein update 2009. 6.18
PSORT

psg: 0.95 gvh: 0.47 alm: 0.32 top: 0.60 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: cytoskeletal

>> prediction for VFE233 is cyt

5' end seq. ID VFE233F
5' end seq.
>VFE233F.Seq
ACTTATTACTTTATTTTTTTTTATCTCTATCTATATATATATCATTTTTTAAAATGAGCG
TCATCAAATCAATTAAAGCCAGAGAAATTTTAGATTCACGTGGTAACCCAACTGTTGAAG
TTGACCTTTACACCGAAAAAGATGGTGTTGTTTCATCATTCAGAGCTGCAGTTCCATCAG
GTGCATCAACTGGTATTTATGAAGCTGTTGAATTAAGAGATGGTGATAAATCAAGATACT
TAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTCTCGAAGTCATTCAACCAGCCGTCA
TTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATAAATTAATGATCGATCTCGATGGTA
CCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCCTTGCAGTCAGTTTAGCTGTTTGCA
GAGCTGGTGCTGCTGATAGAAATTTACCACTTTACAAATATATCTCAGAAATTGCAGGTA
CTAAAATGAGATTACCAGTTCCAGCATTCAATGTTATCAATGGTGGTTCACATGCAGGTA
ATAAATTAGCTATGCAAGAATTTATGATTTTACCA----------
Length of 5' end seq. 575
3' end seq. ID VFE233Z
3' end seq.
>VFE233Z.Seq
----------AATGTCATCAGTGGTAGATACGGTCAAGATGCTATCAATGTTGGTGATGA
AGGTGGTTTCGCTCCACCAATTCAAAGCAACAAAGAAGGTCTTGAACTCTTAAAACTTGC
CATTGAAAAAGCTGGTTACACAGGTTTAGTTAAAATTGGTATGGATTGTGCTGCCTCTGA
ATTCAAAGTTGAAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTCAGC
TGTTATCTCTGGTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCCAAT
CATTTCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAATTAACAGC
ATCAGTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAATTAA
GACTGGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGGTTC
AGTCACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCATGGT
TAGCCATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTTAGG
TACTGGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAATCA
ACTTGTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGCTGGTTTAACTTTCCG
TAAATTTTAATTTTACTCATAATATGNAAACAAAAC
Length of 3' end seq. 746
Connected seq. ID VFE233P
Connected seq.
>VFE233P.Seq
ACTTATTACTTTATTTTTTTTTATCTCTATCTATATATATATCATTTTTTAAAATGAGCG
TCATCAAATCAATTAAAGCCAGAGAAATTTTAGATTCACGTGGTAACCCAACTGTTGAAG
TTGACCTTTACACCGAAAAAGATGGTGTTGTTTCATCATTCAGAGCTGCAGTTCCATCAG
GTGCATCAACTGGTATTTATGAAGCTGTTGAATTAAGAGATGGTGATAAATCAAGATACT
TAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTCTCGAAGTCATTCAACCAGCCGTCA
TTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATAAATTAATGATCGATCTCGATGGTA
CCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCCTTGCAGTCAGTTTAGCTGTTTGCA
GAGCTGGTGCTGCTGATAGAAATTTACCACTTTACAAATATATCTCAGAAATTGCAGGTA
CTAAAATGAGATTACCAGTTCCAGCATTCAATGTTATCAATGGTGGTTCACATGCAGGTA
ATAAATTAGCTATGCAAGAATTTATGATTTTACCA----------AATGTCATCAGTGGT
AGATACGGTCAAGATGCTATCAATGTTGGTGATGAAGGTGGTTTCGCTCCACCAATTCAA
AGCAACAAAGAAGGTCTTGAACTCTTAAAACTTGCCATTGAAAAAGCTGGTTACACAGGT
TTAGTTAAAATTGGTATGGATTGTGCTGCCTCTGAATTCAAAGTTGAAAATGGTTACGAT
CTTGACTTCAAAACTAAAAACAATGACGGTTCAGCTGTTATCTCTGGTGAAAAATTAGGT
GATCTCTACAGAGAATTCATTAAAGAATATCCAATCATTTCAATTGAAGATCCATTTGAT
CAAGATGATTGGGAATCATACACTAAATTAACAGCATCAGTTGATATTCAAATTGTTGGT
GATGATTTACTTGTTACCAACCCAGAAAGAATTAAGACTGGTATTGAAAAGAAAGCATGT
AATGCTCTTTTATTAAAAGTTAACCAAATTGGTTCAGTCACTGAATCAATTCGTGCCGCT
CTTGACTCAAAGAATGCATCATGGGGTGTCATGGTTAGCCATCGTTCAGGTGAAACTGAA
GATACCTTCATTGCTGATTTAGTTGTTGGTTTAGGTACTGGTCAAATTAAAACTGGTGCT
CCATGTAGATCAGAAAGATTAGCCAAATACAATCAACTTGTTAGAATTAACGAAGAGTTA
GGTGAAAACCATAACTATGCTGGTTTAACTTTCCGTAAATTTTAATTTTACTCATAATAT
GNAAACAAAAC
Length of connected seq. 1321
Full length Seq ID -
Full length Seq. -
Length of full length seq. -