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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM379
Library AF
(Link to library)
Clone ID AFM379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM379 (AFM379Q) /CSM/AF/AFM3-D/AFM379Q.Seq.d/
XXXXXXXXXXACGTGCCGTTGGTAATATTGTCACTGGTGAATCTAGCCAAACTCAAATAG
TCATCGATAATAATGGTGTTGAATTGATCACTCGTCTCTTGGCCGTTCAAAAGAAATCCA
TTCGTAAAGAATCATGTTGGGCATTATCAAATATCACCGCTGGTGAACCATCACAAATCG
ATGTTGTCGTATCAAATCCAAAGACAGTGACAACCTTGATCAGTCTTCTCTCCCACAGTG
AACATGACATTAAACGTGAAGCATGTTGGGCTTTATCAAACTCTACCAATAATTCATCAA
CTAAATCAATTCAAACCTTGGTTCGTCACAATATCTTGAAACATTTTATCGATTTATTAA
ACTCTCAAGATTTAGTTATCCTTAAAATCGTCTTGGAAGGTTTAATCAATATCATTAAAG
AAGGTGAAAAAACTAAAACTAAAACTGGTGTTAATCCATACGTTAACTTGATCTCTGAAA
TGCAAGGTGNAATCCATCATTTATGATCTTCAAGAGCATCAATCAAAAGATGTTTACAAG
AAAGCTTTCGAACTTATTGAATTCTTTGAAAGTTCAGATTATTCTGATTCTGAAAATTCT
GAACCAAATATAAATCAAAAGGTCAATANAATTAGTTCAAATANAAGAATTCAAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---RAVGNIVTGESSQTQIVIDNNGVELITRLLAVQKKSIRKESCWALSNITAGEPSQID
VVVSNPKTVTTLISLLSHSEHDIKREACWALSNSTNNSSTKSIQTLVRHNILKHFIDLLN
SQDLVILKIVLEGLINIIKEGEKTKTKTGVNPYVNLISEMQGXIHHL*ssrasikrclqe
sfrty*il*kfrlf*f*kf*tkykskgqxn*fkxkns
Translated Amino Acid sequence (All Frames) 
Frame A:
---RAVGNIVTGESSQTQIVIDNNGVELITRLLAVQKKSIRKESCWALSNITAGEPSQID
VVVSNPKTVTTLISLLSHSEHDIKREACWALSNSTNNSSTKSIQTLVRHNILKHFIDLLN
SQDLVILKIVLEGLINIIKEGEKTKTKTGVNPYVNLISEMQGXIHHL*ssrasikrclqe
sfrty*il*kfrlf*f*kf*tkykskgqxn*fkxkns


Frame B:
---vplvilslvnlaklk*ssiimvln*slvswpfkrnpfvknhvghyqisplvnhhksm
lsyqiqrq*qp*svfsptvnmtlnvkhvglyqtlpiihqlnqfkpwfvtis*nilsiy*t
lki*lslksswkv*sislkkvkklklklvlihtlt*slkckvxsiiydlqehqskdvykk
afelieffessdysdsensepninqkvnxissnxriq


Frame C:
---crw*ychw*i*pnsnshr**wc*idhsslgrskeihs*rimlgiikyhrw*titnrc
crikskdsdnldqsslpq*t*h*t*smlgfiklyq*fin*insnlgssqyletfyrfikl
srfsyp*nrlgrfnqyh*rr*kn*n*nwc*sir*ldl*narxnpsfmifksinqkmftrk
lsnllnslkvqiililkilnqi*ikrsixlvqixefn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK791 (SFK791Q) /CSM/SF/SFK7-D/SFK791Q.Seq.d/                        825   0.0
SFG195 (SFG195Q) /CSM/SF/SFG1-D/SFG195Q.Seq.d/                        825   0.0
SFG169 (SFG169Q) /CSM/SF/SFG1-C/SFG169Q.Seq.d/                        825   0.0
SFE893 (SFE893Q) /CSM/SF/SFE8-D/SFE893Q.Seq.d/                        825   0.0
CHD227 (CHD227Q) /CSM/CH/CHD2-B/CHD227Q.Seq.d/                        825   0.0
CHB147 (CHB147Q) /CSM/CH/CHB1-B/CHB147Q.Seq.d/                        825   0.0
CFC222 (CFC222Q) /CSM/CF/CFC2-A/CFC222Q.Seq.d/                        825   0.0
AFM379 (AFM379Q) /CSM/AF/AFM3-D/AFM379Q.Seq.d/                        825   0.0
AFG889 (AFG889Q) /CSM/AF/AFG8-D/AFG889Q.Seq.d/                        825   0.0
AFG251 (AFG251Q) /CSM/AF/AFG2-C/AFG251Q.Seq.d/                        825   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...   825   0.0    3
(BJ401303) Dictyostelium discoideum cDNA clone:dds22f23, 3' ...   825   0.0    4
(BJ400595) Dictyostelium discoideum cDNA clone:dds13m23, 3' ...   825   0.0    5
(BJ398078) Dictyostelium discoideum cDNA clone:dds10j24, 3' ...   825   0.0    4
(BJ373871) Dictyostelium discoideum cDNA clone:ddc5k06, 3' e...   825   0.0    6
(BJ347042) Dictyostelium discoideum cDNA clone:dda25n19, 3' ...   825   0.0    2
(BJ342595) Dictyostelium discoideum cDNA clone:dda14b24, 3' ...   825   0.0    4
(BJ342336) Dictyostelium discoideum cDNA clone:dda13e14, 3' ...   825   0.0    4
(BJ340543) Dictyostelium discoideum cDNA clone:dda2i16, 3' e...   825   0.0    4
(BJ340099) Dictyostelium discoideum cDNA clone:dda11k17, 3' ...   817   0.0    4
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76P29) RecName: Full=Importin subunit alpha-B; AltName: Full=K...   111   2e-25
AJ557449_1(AJ557449|pid:none) Xenopus laevis mRNA for importin a...   104   9e-24
AE017344_469(AE017344|pid:none) Cryptococcus neoformans var. neo...   107   1e-23
CP000881_79(CP000881|pid:none) Hemiselmis andersenii chromosome ...   111   2e-23
(O94374) RecName: Full=Importin subunit alpha-2; AltName: Full=K...   107   2e-23
BT063489_1(BT063489|pid:none) Zea mays full-length cDNA clone ZM...   110   2e-23
BT041626_1(BT041626|pid:none) Zea mays full-length cDNA clone ZM...   110   2e-23
BC105813_1(BC105813|pid:none) Rattus norvegicus karyopherin (imp...   104   2e-23
(Q60960) RecName: Full=Importin subunit alpha-1; AltName: Full=K...   104   2e-23
(P83953) RecName: Full=Importin subunit alpha-1; AltName: Full=K...   104   2e-23
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM379 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM379Z
3' end seq. 
>AFM379Z.Seq
XXXXXXXXXXACGTGCCGTTGGTAATATTGTCACTGGTGAATCTAGCCAAACTCAAATAG
TCATCGATAATAATGGTGTTGAATTGATCACTCGTCTCTTGGCCGTTCAAAAGAAATCCA
TTCGTAAAGAATCATGTTGGGCATTATCAAATATCACCGCTGGTGAACCATCACAAATCG
ATGTTGTCGTATCAAATCCAAAGACAGTGACAACCTTGATCAGTCTTCTCTCCCACAGTG
AACATGACATTAAACGTGAAGCATGTTGGGCTTTATCAAACTCTACCAATAATTCATCAA
CTAAATCAATTCAAACCTTGGTTCGTCACAATATCTTGAAACATTTTATCGATTTATTAA
ACTCTCAAGATTTAGTTATCCTTAAAATCGTCTTGGAAGGTTTAATCAATATCATTAAAG
AAGGTGAAAAAACTAAAACTAAAACTGGTGTTAATCCATACGTTAACTTGATCTCTGAAA
TGCAAGGTGNAATCCATCATTTATGATCTTCAAGAGCATCAATCAAAAGATGTTTACAAG
AAAGCTTTCGAACTTATTGAATTCTTTGAAAGTTCAGATTATTCTGATTCTGAAAATTCT
GAACCAAATATAAATCAAAAGGTCAATANAATTAGTTCAAATANAAGAATTCAAT
Length of 3' end seq. 655
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -