>VFE215 (VFE215Q) /CSM/VF/VFE2-A/VFE215Q.Seq.d/
AATAATACTAATAATAATGATAACAATCCAAATGTAATCACTCAATATTTCCAAAGTAAT
CAAGGTTACGATAATAATAATAACTTCAATAATATATCTCAATACTTTTCGAAAAAATAA
AAGATTATTAATTGAACAAAAAAAAAAXXXXXXXXXXCCAGCCCTTGTAGACTATAATCC
ACATCCAATAGGTCAAGACGATGCACGTAGTGAATACCTTAGTGTTGGTTGGTCAAAGAA
AACTCAAGCATTATTAACACTCGGTTTCAATTATGTCGGTAACAATATGTTCTTTTATTA
TAATATAACTCAATATCAAGTTAGCGAGGCCTATGAAAATAGTTTAACCCAATGTTATGA
TTACACTCAAGGTTTAATGTACATAAATTATATTAACCCAACAAGCACCCAAAGACAAAT
TCTAGTTTATCAACCATTCAATCATTCAGATGGTATATGCATTGATGAATATTCATTCGA
GCCAGGCACAGATCTTACCAAATCAGTTGAATCCAATGTTTATCTTTTCTATTCAACCGT
TGGAAATCAAAAAGAAAGTCCACTCTATATGGTTGAAGTTGCAAATGTTACAGGCACAAA
TTCAACCGTTAATTTATTATCAGTTGGTTTATCTGCCACTGGTTACACTGCATCAAGTAG
TGTCATCTTATCTTTAGATAATAGTTANGGTCCCANANTNGATGGTNC

iiliimitiqm*SLNISKVIKVTIIIITSIIYLNTFRKNKRLLIEQKK---

---PALVDYNPHPIGQDDARSEYLSVGWSKKTQALLTLGFNYVGNNMFFYYNITQYQVSE
AYENSLTQCYDYTQGLMYINYINPTSTQRQILVYQPFNHSDGICIDEYSFEPGTDLTKSV
ESNVYLFYSTVGNQKESPLYMVEVANVTGTNSTVNLLSVGLSATGYTASSSVILSLDNSX
GPXXDG

Frame A:
nntnnndnnpnvitqyfqsnqgydnnnnfnnisqyfskk*kiin*tkkk---

---PALVDYNPHPIGQDDARSEYLSVGWSKKTQALLTLGFNYVGNNMFFYYNITQYQVSE
AYENSLTQCYDYTQGLMYINYINPTSTQRQILVYQPFNHSDGICIDEYSFEPGTDLTKSV
ESNVYLFYSTVGNQKESPLYMVEVANVTGTNSTVNLLSVGLSATGYTASSSVILSLDNSX
GPXXDG

Frame B:
iiliimitiqm*SLNISKVIKVTIIIITSIIYLNTFRKNKRLLIEQKK---

---qpl*tiihiq*vktmhvvntlvlvgqrklkhy*hsvsimsvticsfiii*lniklar
pmkiv*pnvmitlkv*ct*iiltqqapkdkf*finhsiiqmvyalmnihssqaqilpnql
npmfifsiqpleikkkvhsiwlklqmlqaqiqpliyyqlvylplvtlhqvvssyl*iivx
vpxxmv

Frame C:
*y*****qskcnhsifpk*srlr****lq*yisilfekikdy*lnkkk---

---spcrl*stsnrsrrct**ip*cwlvkenssiintrfqlcr*qyvlll*ynsiss*rg
l*k*fnpml*lhsrfnvhkly*pnkhpktnsslstiqsfrwymh**ifirarhrsyqis*
iqclsflfnrwkskrkstlyg*sckcyrhkfnr*fiiswfichwlhcik*chlifr**lx
sxxxwx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE215 (VFE215Q) /CSM/VF/VFE2-A/VFE215Q.Seq.d/                       1065   0.0
VFL889 (VFL889Q) /CSM/VF/VFL8-D/VFL889Q.Seq.d/                        747   0.0
VSK244 (VSK244Q) /CSM/VS/VSK2-B/VSK244Q.Seq.d/                        504   e-141
VFM769 (VFM769Q) /CSM/VF/VFM7-C/VFM769Q.Seq.d/                        458   e-128
VSB371 (VSB371Q) /CSM/VS/VSB3-C/VSB371Q.Seq.d/                         46   7e-04
VHP464 (VHP464Q) /CSM/VH/VHP4-C/VHP464Q.Seq.d/                         46   7e-04
VHN433 (VHN433Q) /CSM/VH/VHN4-B/VHN433Q.Seq.d/                         46   7e-04
VHF509 (VHF509Q) /CSM/VH/VHF5-A/VHF509Q.Seq.d/                         46   7e-04
VHF102 (VHF102Q) /CSM/VH/VHF1-A/VHF102Q.Seq.d/                         46   7e-04
VHB376 (VHB376Q) /CSM/VH/VHB3-D/VHB376Q.Seq.d/                         46   7e-04

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   264  1e-66  1
AF153750|AF153750.1 Sepia officinalis clone so3a4 microsatellite sequence.    42  1e-04  2
BX072529|BX072529.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.001  3
AZ732206|AZ732206.1 RPCI-24-84G4.TVB RPCI-24 Mus musculus genomic clone RPCI-24-84G4, DNA sequence.    48  0.002  2
AC139832|AC139832.1 Homo sapiens chromosome 5 clone RP11-853C12, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44  0.003  5
AI253842|AI253842.1 AIMS-P.mon45 Giant tiger prawn eyestalk cDNA library Penaeus monodon cDNA 5', mRNA sequence.    46  0.003  2
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          40  0.009  7
AL929105|AL929105.26 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-142D6.    42  0.010  3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    42  0.011  5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    46  0.012  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR932256_1(CR932256|pid:none) Putative N6-adenosine-methyltransf...    39   0.20
CR932259_1(CR932259|pid:none) Putative N6-adenosine-methyltransf...    37   0.45
AE014185_51(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    36   1.3
AB248056_1(AB248056|pid:none) Bacillus circulans agl gene for al...    36   1.3
CP001108_845(CP001108|pid:none) Prosthecochloris aestuarii DSM 2...    35   1.7
AM910990_36(AM910990|pid:none) Plasmodium knowlesi strain H chro...    35   2.9
CP000740_224(CP000740|pid:none) Sinorhizobium medicae WSM419 pla...    34   4.9
AY608846_1(AY608846|pid:none) Plasmodium vivax isolate MalDB100_...    33   6.5
CP000241_1097(CP000241|pid:none) Helicobacter pylori HPAG1, comp...    33   8.4
AC152937_20(AC152937|pid:none) Medicago truncatula clone mth2-96...    33   8.4

 psg: 0.97  gvh: 0.39  alm: 0.31  top: 0.67  tms: 0.07  mit: 0.43  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VFE215 is nuc

>VFE215F.Seq
AATAATACTAATAATAATGATAACAATCCAAATGTAATCACTCAATATTTCCAAAGTAAT
CAAGGTTACGATAATAATAATAACTTCAATAATATATCTCAATACTTTTCGAAAAAATAA
AAGATTATTAATTGAACAAAAAAAAAA----------

>VFE215Z.Seq
----------CCAGCCCTTGTAGACTATAATCCACATCCAATAGGTCAAGACGATGCACG
TAGTGAATACCTTAGTGTTGGTTGGTCAAAGAAAACTCAAGCATTATTAACACTCGGTTT
CAATTATGTCGGTAACAATATGTTCTTTTATTATAATATAACTCAATATCAAGTTAGCGA
GGCCTATGAAAATAGTTTAACCCAATGTTATGATTACACTCAAGGTTTAATGTACATAAA
TTATATTAACCCAACAAGCACCCAAAGACAAATTCTAGTTTATCAACCATTCAATCATTC
AGATGGTATATGCATTGATGAATATTCATTCGAGCCAGGCACAGATCTTACCAAATCAGT
TGAATCCAATGTTTATCTTTTCTATTCAACCGTTGGAAATCAAAAAGAAAGTCCACTCTA
TATGGTTGAAGTTGCAAATGTTACAGGCACAAATTCAACCGTTAATTTATTATCAGTTGG
TTTATCTGCCACTGGTTACACTGCATCAAGTAGTGTCATCTTATCTTTAGATAATAGTTA
NGGTCCCANANTNGATGGTNC

>VFE215P.Seq
AATAATACTAATAATAATGATAACAATCCAAATGTAATCACTCAATATTTCCAAAGTAAT
CAAGGTTACGATAATAATAATAACTTCAATAATATATCTCAATACTTTTCGAAAAAATAA
AAGATTATTAATTGAACAAAAAAAAAA----------CCAGCCCTTGTAGACTATAATCC
ACATCCAATAGGTCAAGACGATGCACGTAGTGAATACCTTAGTGTTGGTTGGTCAAAGAA
AACTCAAGCATTATTAACACTCGGTTTCAATTATGTCGGTAACAATATGTTCTTTTATTA
TAATATAACTCAATATCAAGTTAGCGAGGCCTATGAAAATAGTTTAACCCAATGTTATGA
TTACACTCAAGGTTTAATGTACATAAATTATATTAACCCAACAAGCACCCAAAGACAAAT
TCTAGTTTATCAACCATTCAATCATTCAGATGGTATATGCATTGATGAATATTCATTCGA
GCCAGGCACAGATCTTACCAAATCAGTTGAATCCAATGTTTATCTTTTCTATTCAACCGT
TGGAAATCAAAAAGAAAGTCCACTCTATATGGTTGAAGTTGCAAATGTTACAGGCACAAA
TTCAACCGTTAATTTATTATCAGTTGGTTTATCTGCCACTGGTTACACTGCATCAAGTAG
TGTCATCTTATCTTTAGATAATAGTTANGGTCCCANANTNGATGGTNC