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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE203
Library VF
(Link to library)
Clone ID VFE203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16543-1
Original site URL
Representative seq. ID VFE203P
(Link to Original site)
Representative DNA sequence 
>VFE203 (VFE203Q) /CSM/VF/VFE2-A/VFE203Q.Seq.d/
ACAATCAAATAAATAATTTATATTAAAAAATGTCCAAAGTAATTCATGTTACATCTAATG
AAGAATTAGATAAATATTTGCAACATCAAAGAGTAGTTGTTGACTTTAGTGCTGAATGGT
GTGGTCCATGTAGAGCAATAGCTCCGGTATTTGACAAGCTTTCAAACGAATTTACAACAT
TTACATTCGTTCATGTTGACATTGATAAAGTAAATACTCATCCAATAGTAAAAGAAATTA
GAAGTGTTCCTACATTCTATTTTTACGTAAATGGAGCTAAAGTATCAGAATTCAGTGGTG
CCAATGAAGCAACTCTAAGAAGTACTCTAGAAGCAAACATATAATTTTTTGTTAAATTAA
TAATTGCACAAAAAATGCAACAAATTAAATAAATAAATAAAAAAAAAAXXXXXXXXXXAC
AATCAAATAAATAATTTATATTAAAAAATGTCCAAAGTAATTCATGTTACATCTAATGAA
NAATTANATAAATATTTGCAACATCAAANAGTAGTTGTTGACTTTAGTGCTGAATGGTGT
GGTCCATGTANANCAANAGCTCCGGTATTTGACAAGCTTTCAAACGAATTTACAACATTT
ACATTCGTTCATGTTGACATTGATAAAGTAAANACTCATCCAATAGTAAAANAAATTANA
AGTGNTCCTACNTTCTATTTTTACGTAAATGGAGCTAAAGNATCAGAATTCAGTGGNGCC
AATGAAGCAACNCTAANAAGNACNCTANAAGCAAACANATAATTTTTTGTTAAATTAATA
ATTGCNCAAAAAATGC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nqinnly*kmskvihvtsneeldkylqhqrvvvdfsaewcgpcraiapvfdklsnefttf
tfvhvdidkvnthpivkeirsvptfyfyvngakvsefsganeatlrstleani*ffvkli
iaqkmqqik*INKKK---

---NQINNLY*kmskvihvtsnexlxkylqhqxvvvdfsaewcgpcxxxapvfdklsnef
ttftfvhvdidkvxthpivkxixsxptfyfyvngakxsefsganeatlxxtlxanx*ffv
kliiaqkm
Translated Amino Acid sequence (All Frames) 
Frame A:
tik*iiyikkcpk*fmlhlmkn*inicnike*lltlvlngvvhveq*lryltsfqtnlqh
lhsfmltlik*iliq**kklevflhsift*melkyqnsvvpmkql*evl*kqtynflln*
*lhkkcnklnk*ikkk---

---tik*iiyikkcpk*fmlhlmxnxinicnikx*lltlvlngvvhvxqxlryltsfqtn
lqhlhsfmltlik*xliq**xklxvxlxsift*melkxqnsvxpmkqx*xxxxkqtxnfl
ln**lxkkc

Frame B:
qsnk*filknvqsnscyi**rir*ifatskssc*l*c*mvwsm*snssgi*qafkriyni
yirsc*h**skyssnskrn*kcsyilflrkws*siriqwcq*snskkysrskhiifc*in
nctknatn*ink*kk---

---qsnk*filknvqsnscyi**xix*ifatsxssc*l*c*mvwsmxxxssgi*qafkri
yniyirsc*h**skxssnskxnxkxsyxlflrkws*xiriqwxq*snxxkxxxskxiifc
*inncxkn

Frame C:
nqinnly*kmskvihvtsneeldkylqhqrvvvdfsaewcgpcraiapvfdklsnefttf
tfvhvdidkvnthpivkeirsvptfyfyvngakvsefsganeatlrstleani*ffvkli
iaqkmqqik*INKKK---

---NQINNLY*kmskvihvtsnexlxkylqhqxvvvdfsaewcgpcxxxapvfdklsnef
ttftfvhvdidkvxthpivkxixsxptfyfyvngakxsefsganeatlxxtlxanx*ffv
kliiaqkm
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE203 (VFE203Q) /CSM/VF/VFE2-A/VFE203Q.Seq.d/                        789   0.0
SSM363 (SSM363Q) /CSM/SS/SSM3-C/SSM363Q.Seq.d/                        789   0.0
SSG694 (SSG694Q) /CSM/SS/SSG6-D/SSG694Q.Seq.d/                        785   0.0
AHQ460 (AHQ460Q) /CSM/AH/AHQ4-C/AHQ460Q.Seq.d/                        785   0.0
VSH381 (VSH381Q) /CSM/VS/VSH3-D/VSH381Q.Seq.d/                        777   0.0
VSK430 (VSK430Q) /CSM/VS/VSK4-B/VSK430Q.Seq.d/                        775   0.0
SSI310 (SSI310Q) /CSM/SS/SSI3-A/SSI310Q.Seq.d/                        775   0.0
SSG160 (SSG160Q) /CSM/SS/SSG1-C/SSG160Q.Seq.d/                        775   0.0
SSE281 (SSE281Q) /CSM/SS/SSE2-D/SSE281Q.Seq.d/                        775   0.0
SSC339 (SSC339Q) /CSM/SS/SSC3-B/SSC339Q.Seq.d/                        765   0.0
own update 2004. 7.30
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M91383|M91383.1 Dictyostelium discoideum thioredoxin (TRX3) mRNA, complete cds.   745  0.0  1
M91384|M91384.1 Dictyostelium discoideum thioredoxin (TRX1) mRNA, complete cds.   470  e-143  2
M91382|M91382.1 Dictyostelium discoideum thioredoxin (TRX2) mRNA, 5' end.   375  e-100  1
AC119905|AC119905.3 Mus musculus clone RP24-238N14, WORKING DRAFT SEQUENCE, 6 unordered pieces.    48  7e-06  3
AF222718|AF222718.1 Chrysodidymus synuroideus mitochondrion, complete genome.    38  7e-04  6
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    36  0.001  10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          42  0.002  8
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          40  0.002  10
AC005504|AC005504.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    32  0.006  7
AL109814|AL109814.1 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P11.    42  0.008  6
dna update 2003. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P29447) RecName: Full=Thioredoxin-3;          Short=Trx-3;           213   4e-54
C46264(C46264) thioredoxin 3 - slime mold (Dictyostelium discoid...   211   3e-53
(P29446) RecName: Full=Thioredoxin-2;          Short=Trx-2; Flag...   157   3e-37
BC129794_1(BC129794|pid:none) Xenopus laevis hypothetical protei...    95   2e-18
FN392322_288(FN392322|pid:none) Pichia pastoris GS115 chromosome...    93   1e-17
BC166957_1(BC166957|pid:none) Xenopus tropicalis hypothetical pr...    92   2e-17
BC072884_1(BC072884|pid:none) Xenopus laevis MGC80314 protein, m...    90   9e-17
AF202664_1(AF202664|pid:none) Plasmodium falciparum thioredoxin ...    89   2e-16
FJ384985_1(FJ384985|pid:none) Bombina orientalis thioredoxin mRN...    86   2e-15
AY184798_1(AY184798|pid:none) Chlamydomonas reinhardtii thioredo...    85   2e-15
protein update 2009. 6.18
PSORT -
5' end seq. ID VFE203F
5' end seq. 
>VFE203F.Seq
ACAATCAAATAAATAATTTATATTAAAAAATGTCCAAAGTAATTCATGTTACATCTAATG
AAGAATTAGATAAATATTTGCAACATCAAAGAGTAGTTGTTGACTTTAGTGCTGAATGGT
GTGGTCCATGTAGAGCAATAGCTCCGGTATTTGACAAGCTTTCAAACGAATTTACAACAT
TTACATTCGTTCATGTTGACATTGATAAAGTAAATACTCATCCAATAGTAAAAGAAATTA
GAAGTGTTCCTACATTCTATTTTTACGTAAATGGAGCTAAAGTATCAGAATTCAGTGGTG
CCAATGAAGCAACTCTAAGAAGTACTCTAGAAGCAAACATATAATTTTTTGTTAAATTAA
TAATTGCACAAAAAATGCAACAAATTAAATAAATAAATAAAAAAAAAA----------
Length of 5' end seq. 408
3' end seq. ID VFE203Z
3' end seq. 
>VFE203Z.Seq
----------ACAATCAAATAAATAATTTATATTAAAAAATGTCCAAAGTAATTCATGTT
ACATCTAATGAANAATTANATAAATATTTGCAACATCAAANAGTAGTTGTTGACTTTAGT
GCTGAATGGTGTGGTCCATGTANANCAANAGCTCCGGTATTTGACAAGCTTTCAAACGAA
TTTACAACATTTACATTCGTTCATGTTGACATTGATAAAGTAAANACTCATCCAATAGTA
AAANAAATTANAAGTGNTCCTACNTTCTATTTTTACGTAAATGGAGCTAAAGNATCAGAA
TTCAGTGGNGCCAATGAAGCAACNCTAANAAGNACNCTANAAGCAAACANATAATTTTTT
GTTAAATTAATAATTGCNCAAAAAATGC
Length of 3' end seq. 378
Connected seq. ID VFE203P
Connected seq. 
>VFE203P.Seq
ACAATCAAATAAATAATTTATATTAAAAAATGTCCAAAGTAATTCATGTTACATCTAATG
AAGAATTAGATAAATATTTGCAACATCAAAGAGTAGTTGTTGACTTTAGTGCTGAATGGT
GTGGTCCATGTAGAGCAATAGCTCCGGTATTTGACAAGCTTTCAAACGAATTTACAACAT
TTACATTCGTTCATGTTGACATTGATAAAGTAAATACTCATCCAATAGTAAAAGAAATTA
GAAGTGTTCCTACATTCTATTTTTACGTAAATGGAGCTAAAGTATCAGAATTCAGTGGTG
CCAATGAAGCAACTCTAAGAAGTACTCTAGAAGCAAACATATAATTTTTTGTTAAATTAA
TAATTGCACAAAAAATGCAACAAATTAAATAAATAAATAAAAAAAAAA----------AC
AATCAAATAAATAATTTATATTAAAAAATGTCCAAAGTAATTCATGTTACATCTAATGAA
NAATTANATAAATATTTGCAACATCAAANAGTAGTTGTTGACTTTAGTGCTGAATGGTGT
GGTCCATGTANANCAANAGCTCCGGTATTTGACAAGCTTTCAAACGAATTTACAACATTT
ACATTCGTTCATGTTGACATTGATAAAGTAAANACTCATCCAATAGTAAAANAAATTANA
AGTGNTCCTACNTTCTATTTTTACGTAAATGGAGCTAAAGNATCAGAATTCAGTGGNGCC
AATGAAGCAACNCTAANAAGNACNCTANAAGCAAACANATAATTTTTTGTTAAATTAATA
ATTGCNCAAAAAATGC
Length of connected seq. 786
Full length Seq ID -
Full length Seq. -
Length of full length seq. -