AFM377
Library AF
(Link to library)
Clone ID AFM377
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM377P
(Link to Original site)
Representative DNA sequence
>AFM377 (AFM377Q) /CSM/AF/AFM3-D/AFM377Q.Seq.d/
ATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTATTTTA
ATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACTTCAA
TCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTTACAA
GACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGGAAAT
TTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACAAATT
TTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAAAATT
GCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTCATTA
TCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATCATAT
CCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATGTCAC
GATGATACAXXXXXXXXXXTATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTG
TTGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATA
AAGTTCCNAATATTANATTTAATGTAGCTAAAACTTTCCAAACCAGCATNCCATTACTCG
ATAGCCCNNCTGCACAATCAAGAGNCAAACCNTTACTCGTANAA
sequence update 2009. 4. 3
Translated Amino Acid sequence
i*KMASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYLQ
DSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCKI
AKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLCH
DDT---

---MTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIXFNVAKTFQTSXPLLDSPX
AQSRXKPLLVX


Translated Amino Acid sequence (All Frames)
Frame A:
i*KMASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYLQ
DSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCKI
AKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLCH
DDT---

---ydhiifnfnpfnccwr*cyl*fngsfigqngfr*ssxyxi*cs*nfpnqhxitr*px
ctikxqtxtrx

Frame B:
ykkwhl*iqnrmiiiqllf*lmn*kmriynldliq*knfnqlqkh*dqnvpvqn*shiyk
tlfskmkmkf*lyyqkn*ei*ssllvvqnmlfvyyhhykf*qvlrn*llekrqwnhyvkl
qkrsqhhhsknhsfhyyfhyqkqiglhhvhqhvdfslyhiqeqmlk*rnl*ekllgdyvt
mi---

---MTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIXFNVAKTFQTSXPLLDSPX
AQSRXKPLLVX

Frame C:
ikngiykyrig*lssncyfn**ikk*gytt*t*fnkktsincksirtrtypyrinpiftr
lcsrr*r*sfsciirrirkfnrvcwwcrtcclfittitnfsrc*gisc*rkgsgiim*nc
krdpniiirriipsiiifiiksrlvyityismwtfhciiskskc*neeifkknfwgimsr
*y---

---*phyfqfqpfqlllevmlslvqwflywpkwfpikfxilxlm*lklskpaxhysiaxl
hnqexnxysx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB858 (VHB858Q) /CSM/VH/VHB8-C/VHB858Q.Seq.d/ 1047 0.0
VFK235 (VFK235Q) /CSM/VF/VFK2-B/VFK235Q.Seq.d/ 1047 0.0
VFI677 (VFI677Q) /CSM/VF/VFI6-D/VFI677Q.Seq.d/ 1047 0.0
VFG407 (VFG407Q) /CSM/VF/VFG4-A/VFG407Q.Seq.d/ 1047 0.0
VFD320 (VFD320Q) /CSM/VF/VFD3-A/VFD320Q.Seq.d/ 1047 0.0
VFC754 (VFC754Q) /CSM/VF/VFC7-C/VFC754Q.Seq.d/ 1047 0.0
VFC557 (VFC557Q) /CSM/VF/VFC5-C/VFC557Q.Seq.d/ 1047 0.0
SFK401 (SFK401Q) /CSM/SF/SFK4-A/SFK401Q.Seq.d/ 1047 0.0
SFJ287 (SFJ287Q) /CSM/SF/SFJ2-D/SFJ287Q.Seq.d/ 1047 0.0
SFJ265 (SFJ265Q) /CSM/SF/SFJ2-C/SFJ265Q.Seq.d/ 1047 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(U61987) Dictyostelium discoideum phosphoprotein phosphatase... 862 0.0 3
(BJ387204) Dictyostelium discoideum cDNA clone:dds12f24, 5' ... 862 0.0 2
(BJ412141) Dictyostelium discoideum cDNA clone:ddv7h05, 5' e... 862 0.0 2
(BJ418939) Dictyostelium discoideum cDNA clone:ddv34d16, 5' ... 862 0.0 2
(BJ415059) Dictyostelium discoideum cDNA clone:ddv21e10, 5' ... 862 0.0 2
(BJ414343) Dictyostelium discoideum cDNA clone:ddv18i20, 5' ... 862 0.0 2
(BJ412869) Dictyostelium discoideum cDNA clone:ddv13n02, 5' ... 862 0.0 2
(BJ360568) Dictyostelium discoideum cDNA clone:ddc6c19, 5' e... 862 0.0 2
(BJ327838) Dictyostelium discoideum cDNA clone:dda21o24, 5' ... 862 0.0 2
(BJ389746) Dictyostelium discoideum cDNA clone:dds19m22, 5' ... 862 0.0 2
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei... 281 2e-74
AJ876407_1(AJ876407|pid:none) Tribolium castaneum mRNA for phosp... 167 4e-40
BT072580_1(BT072580|pid:none) Salmo salar clone ssal-rgf-531-139... 160 5e-38
BX901896_5(BX901896|pid:none) Zebrafish DNA sequence from clone ... 159 9e-38
AK161392_1(AK161392|pid:none) Mus musculus adult male testis cDN... 159 1e-37
BC075576_1(BC075576|pid:none) Xenopus tropicalis platelet-derive... 159 1e-37
(Q4QQT4) RecName: Full=Serine/threonine-protein phosphatase 2A 6... 159 1e-37
EU561359_1(EU561359|pid:none) Carassius auratus protein phosphat... 158 1e-37
BC043624_1(BC043624|pid:none) Xenopus laevis phosphorylase phosp... 157 3e-37
S65952(S65952;S72499)[phosphorylase] phosphatase (EC 3.1.3.17) b... 157 3e-37
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM377 is

5' end seq. ID AFM377F
5' end seq.
>AFM377F.Seq
ATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTATTTTA
ATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACTTCAA
TCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTTACAA
GACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGGAAAT
TTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACAAATT
TTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAAAATT
GCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTCATTA
TCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATCATAT
CCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATGTCAC
GATGATACAXXXXXXXXXX
Length of 5' end seq. 559
3' end seq. ID AFM377Z
3' end seq.
>AFM377Z.Seq
XXXXXXXXXXTATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTGTTGGAGGTG
ATGTTATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATAAAGTTCCNA
ATATTANATTTAATGTAGCTAAAACTTTCCAAACCAGCATNCCATTACTCGATAGCCCNN
CTGCACAATCAAGAGNCAAACCNTTACTCGTANAA
Length of 3' end seq. 215
Connected seq. ID AFM377P
Connected seq.
>AFM377P.Seq
ATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTATTTTA
ATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACTTCAA
TCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTTACAA
GACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGGAAAT
TTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACAAATT
TTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAAAATT
GCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTCATTA
TCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATCATAT
CCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATGTCAC
GATGATACA----------TATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTG
TTGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATA
AAGTTCCNAATATTANATTTAATGTAGCTAAAACTTTCCAAACCAGCATNCCATTACTCG
ATAGCCCNNCTGCACAATCAAGAGNCAAACCNTTACTCGTANAA
Length of connected seq. 754
Full length Seq ID -
Full length Seq. -
Length of full length seq. -