VFE188
Library VF
(Link to library)
Clone ID VFE188
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VFE188P
(Link to Original site)
Representative DNA sequence
>VFE188 (VFE188Q) /CSM/VF/VFE1-D/VFE188Q.Seq.d/
AGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAA
AGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAG
TCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAG
TTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGT
CAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAAC
ATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAAC
ATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCAT
TGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTT
ATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATA
TGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGATGG
GCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTTCAXXXXXXXXXXTTGTCACTC
CATTCCAAACTCGTTCATGGTATCATAAATATCAACACATTTACGCTCCACTCCTCTATG
GTATTTACACACTCAAATATCGTACTCAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAA
ATGGTGCAATTCGTGTTAGTGTCGCCACAAATTTCGATAAGGCCGCTTACGTCATTGGTA
AATTGTCTTTTGTTTTCTTCCGTTTCATCCTTCCACTCCGTTATCATAGCTTTACAGATT
TAATTTGTTATTTCCTCATTGCTGAATTCGTCTTTGGTTGGTATCTCACAATTAATTTCC
AAGTTAGTCATGTCGCTGAAGATCTCAAATTCTTTGCTACCCCTGAAAGACCAGATGAAC
CATCTCAAATCAATGAAGATTGGGCAATCCTTCAACTTAAAACTACTCAAGATTATGGTC
ATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAATCATCAAGTTGTTCATCATT
TATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGTACCAATTGTAAAAGAAGTTT
GTAAAGAACATAACATTACTTACCACATTAAACCAAACTTCACTGAAGCTATTATGTCAC
ACATTAATTACCTTTACAAAATGGGTAATGATCCAGATTATGTTAAAAAACCATTAGCCT
CAAAAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence
yflyiy**NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEV
LLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKH
FKATDQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHM
MHDSCHAAISHYPGVWKWMGASFDFVTGASFLS---

---VTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVATNFDKA
AYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFATP
ERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLVP
IVKEVCKEHNITYHIKPNFTEAIMSHINYLYKMGNDPDYVKKPLASK


Translated Amino Acid sequence (All Frames)
Frame A:
sifctyinrivikcqk*lqesntlgqs*pnitlkmivglqsmvkfmilqdgyhyiqvvkk
fyf*qqvemlqiylkviiqcqinqhqf*rimkldifhhmniqnlfknqistrh*krelen
ilkqpikihkwqlvfshv*hwfif*cl*lti*hiipvtifi*ivswqsfthfathysqci
*cmihvmlpfhiiqaygngwahhlisslvlhsf---

---lslhsklvhgiinintftlhssmvfthsnivlkigkll*rmvkmvqfvlvspqisir
pltslvncllfssvssfhsviialqi*fvissllnsslvgisqlisklvmslkisnsllp
lkdqmnhlksmkigqsfnlkllkimvmvhsfvpflvvl*iiklfiiyshqllkisthnly
ql*kkfvknitllttlnqtslkllchtlitftkwvmiqimlknh*pqk

Frame B:
vfsvhiliel**nvksnyrkaillvrvsqt*h*k*llgcsrw*sl*yykmgtitsrw*rs
ftfssr*rcykfi*klssnvr*tninfkel*nwiyfii*tskicskirflqdikres*kt
f*snrsrstngs*yfltfsiglsfsvcnllfstlyq*qflfklflgnrlrtlqliilnay
da*fmscchftlsrrmemdgrii*frhwcfipf---

---chsipnsfmvs*isthlrstplwylhtqisysrlgsfckgw*kwcnsc*crhkfr*g
rlrhw*ivfcflpfhpstpls*lyrfnllfphc*irlwlvshn*fps*scr*rsqilcyp
*ktr*tisnq*rlgnpst*nysrlwswftplylf*wffkssscssfipincsrflpttct
nckrsl*rt*hylph*tklh*syyvth*lplqng**srlc*ktislkr

Frame C:
yflyiy**NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEV
LLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKH
FKATDQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHM
MHDSCHAAISHYPGVWKWMGASFDFVTGASFLS---

---VTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVATNFDKA
AYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFATP
ERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLVP
IVKEVCKEHNITYHIKPNFTEAIMSHINYLYKMGNDPDYVKKPLASK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE188 (VFE188Q) /CSM/VF/VFE1-D/VFE188Q.Seq.d/ 2571 0.0
SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/ 1340 0.0
SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/ 1340 0.0
SLA256 (SLA256Q) /CSM/SL/SLA2-C/SLA256Q.Seq.d/ 1338 0.0
VFM295 (VFM295Q) /CSM/VF/VFM2-D/VFM295Q.Seq.d/ 1336 0.0
VFN123 (VFN123Q) /CSM/VF/VFN1-A/VFN123Q.Seq.d/ 1334 0.0
VFI562 (VFI562Q) /CSM/VF/VFI5-C/VFI562Q.Seq.d/ 1324 0.0
VFB864 (VFB864Q) /CSM/VF/VFB8-C/VFB864Q.Seq.d/ 1324 0.0
VFD240 (VFD240Q) /CSM/VF/VFD2-B/VFD240Q.Seq.d/ 1318 0.0
VFF269 (VFF269Q) /CSM/VF/VFF2-C/VFF269Q.Seq.d/ 1314 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BD092935|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants. 1338 0.0 1
BD082645|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids. 1338 0.0 1
BD082630|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids. 1338 0.0 1
AB029311|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds. 983 0.0 4
AB022097|AB022097.1 Dictyostelium discoideum mRNA for delta 5 fatty acid desaturase, complete cds. 149 e-117 12
AL355612|AL355612.8 Human DNA sequence from clone RP11-343P23 on chromosome 6 Contains GSSs. 42 0.17 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.19 16
AC137050|AC137050.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 48 0.28 1
AC117308|AC117308.7 Rattus norvegicus clone CH230-216M16, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 48 0.28 1
AC117128|AC117128.8 Rattus norvegicus clone CH230-230O8, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 48 0.28 1
dna update 2003. 9.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A; ... 848 0.0
(O96099) RecName: Full=Delta(5) fatty acid desaturase B; ... 562 e-159
(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C... 498 e-139
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a... 293 9e-78
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5... 278 3e-73
(O74212) RecName: Full=Delta(5) fatty acid desaturase; ... 278 4e-73
CQ831428_1(CQ831428|pid:none) Sequence 9 from Patent WO2004057001. 233 1e-59
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ... 233 1e-59
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 226 2e-57
CP001574_328(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 225 2e-57
protein update 2009. 6.18
PSORT

psg: 0.70 gvh: 0.24 alm: 0.25 top: 0.63 tms: 0.07 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for VFE188 is nuc

5' end seq. ID VFE188F
5' end seq.
>VFE188F.Seq
AGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAA
AGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAG
TCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAG
TTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGT
CAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAAC
ATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAAC
ATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCAT
TGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTT
ATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATA
TGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGATGG
GCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTTCA----------
Length of 5' end seq. 641
3' end seq. ID VFE188Z
3' end seq.
>VFE188Z.Seq
----------TTGTCACTCCATTCCAAACTCGTTCATGGTATCATAAATATCAACACATT
TACGCTCCACTCCTCTATGGTATTTACACACTCAAATATCGTACTCAAGATTGGGAAGCT
TTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATTTCGATAAG
GCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTCCACTCCGT
TATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCTTTGGTTGG
TATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCTTTGCTACC
CCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATCCTTCAACTTAAA
ACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAAT
CATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGTA
CCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAACCAAACTTC
ACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATGATCCAGATTAT
GTTAAAAAACCATTAGCCTCAAAAGA
Length of 3' end seq. 676
Connected seq. ID VFE188P
Connected seq.
>VFE188P.Seq
AGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAA
AGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAG
TCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAG
TTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGT
CAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAAC
ATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAAC
ATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCAT
TGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTT
ATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATA
TGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGATGG
GCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTTCA----------TTGTCACTC
CATTCCAAACTCGTTCATGGTATCATAAATATCAACACATTTACGCTCCACTCCTCTATG
GTATTTACACACTCAAATATCGTACTCAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAA
ATGGTGCAATTCGTGTTAGTGTCGCCACAAATTTCGATAAGGCCGCTTACGTCATTGGTA
AATTGTCTTTTGTTTTCTTCCGTTTCATCCTTCCACTCCGTTATCATAGCTTTACAGATT
TAATTTGTTATTTCCTCATTGCTGAATTCGTCTTTGGTTGGTATCTCACAATTAATTTCC
AAGTTAGTCATGTCGCTGAAGATCTCAAATTCTTTGCTACCCCTGAAAGACCAGATGAAC
CATCTCAAATCAATGAAGATTGGGCAATCCTTCAACTTAAAACTACTCAAGATTATGGTC
ATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAATCATCAAGTTGTTCATCATT
TATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGTACCAATTGTAAAAGAAGTTT
GTAAAGAACATAACATTACTTACCACATTAAACCAAACTTCACTGAAGCTATTATGTCAC
ACATTAATTACCTTTACAAAATGGGTAATGATCCAGATTATGTTAAAAAACCATTAGCCT
CAAAAGA
Length of connected seq. 1317
Full length Seq ID -
Full length Seq. -
Length of full length seq. -