>VFE113 (VFE113Q) /CSM/VF/VFE1-A/VFE113Q.Seq.d/
XXXXXXXXXXATCCATTAGATGCAAGAGGTGAAGTTGATGAATGTGCATCATTTAAATGT
GGTGGTCGTTGGTTAGTTGATGGCGAACCAGTTCAATTTCCACAACCATTTGGTAGAAGT
TTATATCCAGAGGAAACCTATGTAAATGAAATTGATGAAAAAACAGGTGCATCCTTGAAA
TTAACTTTATTAAATCCAAAAGGAAGAATATGGGCAATGGTTGCCGGAGGTGGTGCCTCT
GTTATCTATGCTGACACTGTTGCTGATTTAGGTTTTGGTAATGAGCTTGGAAATTATGGT
GAATATTCCGGTGATCCAAATGAAGAGGATACTCATAAATATGCATGCACTTTAATTTCA
TTGGCAACCAGAAATCCTGATTCTAGACCAAGAGCATTATTAATTGGTGGTGGTATTGCT
AATTTTACTGATGTGGCTGCCACTTTCAAAGGTATCACTAGAGCAATTAAAGAGTATCAT
GATGATATCATTAAATCAAATCTTTCCATTTTCGTTAGAAGAGGTGGTCCAAATTATCAA
TCGGGTTTACAACATATGAGAGAATA

---PLDARGEVDECASFKCGGRWLVDGEPVQFPQPFGRSLYPEETYVNEIDEKTGASLKL
TLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKYACTLISL
ATRNPDSRPRALLIGGGIANFTDVAATFKGITRAIKEYHDDIIKSNLSIFVRRGGPNYQS
GLQHMRE

Frame A:
---sirckr*s**mcii*mwwslvs*wrtssisttiw*kfisrgnlck*n**knrcilei
nfikskrknmgngcrrwclcylc*hcc*frfw**awklw*ifr*sk*rgys*icmhfnfi
gnqks*f*tksiinwwwyc*fy*cgchfqryh*sn*rvs**yh*iksfhfr*krwsklsi
gfttyeri


Frame B:
---PLDARGEVDECASFKCGGRWLVDGEPVQFPQPFGRSLYPEETYVNEIDEKTGASLKL
TLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKYACTLISL
ATRNPDSRPRALLIGGGIANFTDVAATFKGITRAIKEYHDDIIKSNLSIFVRRGGPNYQS
GLQHMRE


Frame C:
---h*mqevklmnvhhlnvvvvg*lmanqfnfhnhlvevyiqrkpm*mklmkkqvhp*n*
ly*iqkeeygqwlpevvpllsmltllli*vlvmsleimvnipviqmkrilinmhal*fhw
qpeilildqehy*lvvvllillmwlplskvsleqlksimmislnqifpfsleevvqiinr
vyni*en

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE113 (VFE113Q) /CSM/VF/VFE1-A/VFE113Q.Seq.d/                       1102   0.0
VFF648 (VFF648Q) /CSM/VF/VFF6-B/VFF648Q.Seq.d/                       1090   0.0
AFA176 (AFA176Q) /CSM/AF/AFA1-D/AFA176Q.Seq.d/                       1090   0.0
SFF560 (SFF560Q) /CSM/SF/SFF5-C/SFF560Q.Seq.d/                       1082   0.0
VFF576 (VFF576Q) /CSM/VF/VFF5-D/VFF576Q.Seq.d/                       1078   0.0
CFF880 (CFF880Q) /CSM/CF/CFF8-D/CFF880Q.Seq.d/                       1078   0.0
AFM446 (AFM446Q) /CSM/AF/AFM4-B/AFM446Q.Seq.d/                       1072   0.0
VFF631 (VFF631Q) /CSM/VF/VFF6-B/VFF631Q.Seq.d/                       1029   0.0
CFI528 (CFI528Q) /CSM/CF/CFI5-B/CFI528Q.Seq.d/                        932   0.0
VSB813 (VSB813Q) /CSM/VS/VSB8-A/VSB813Q.Seq.d/                        874   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM108865|BM108865.1 EST556401 potato roots Solanum tuberosum cDNA clone cPRO2F7 5' end, mRNA sequence.    52  1e-14  4
BQ512190|BQ512190.1 EST619605 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 5' end, mRNA sequence.    52  2e-14  4
BQ512191|BQ512191.1 EST619606 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 3' end, mRNA sequence.    52  5e-12  3
CA932300|CA932300.1 MTU5CS.P11.B11 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.    54  2e-11  3
BJ569621|BJ569621.1 Ipomoea nil cDNA clone:jm6c08, 3' end, single read.    54  3e-11  3
BJ569236|BJ569236.1 Ipomoea nil cDNA clone:jm5a06, 3' end, single read.    54  3e-11  3
BE451022|BE451022.1 EST401909 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY16M5, mRNA sequence.    44  7e-10  3
AW156815|AW156815.1 se31b11.y1 Gm-c1015 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1015-2806 5' similar to TR:O80526 O80526 F19J9.9 PROTEIN. ;, mRNA sequence.    62  2e-09  2
CB970649|CB970649.1 CAB10004_IIIa_Fa_G05 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10004_IIIa_Fa_G05 5', mRNA sequence.    54  4e-09  3
CB975102|CB975102.1 CAB30006_IIc_Ra_B01 Cabernet Sauvignon Berry Stage I - CAB3 Vitis vinifera cDNA clone CAB30006_IIc_Ra_B01 3', mRNA sequence.    54  6e-09  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK062236_1(AK062236|pid:none) Oryza sativa Japonica Group cDNA c...   234   1e-60
AB036847_1(AB036847|pid:none) Ciona intestinalis Ci-ACL mRNA for...   233   2e-60
BT041953_1(BT041953|pid:none) Zea mays full-length cDNA clone ZM...   233   3e-60
AM468006_2(AM468006|pid:none) Vitis vinifera contig VV78X180138....   232   5e-60
BT070808_1(BT070808|pid:none) Picea sitchensis clone WS02750_O19...   231   8e-60
AJ344108_1(AJ344108|pid:none) Lupinus albus mRNA for ATP citrate...   231   8e-60
EU962919_1(EU962919|pid:none) Zea mays clone 246539 ATP-citrate ...   231   1e-59
AC003970_9(AC003970|pid:none) Arabidopsis thaliana chromosome I ...   229   3e-59
AC009398_11(AC009398|pid:none) Genomic sequence for Arabidopsis ...   228   8e-59
AC002292_32(AC002292|pid:none) Arabidopsis thaliana BAC F8A5, co...   226   4e-58

 psg: 0.75  gvh: 0.35  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFE113 is cyt

>VFE113Z.Seq
----------ATCCATTAGATGCAAGAGGTGAAGTTGATGAATGTGCATCATTTAAATGT
GGTGGTCGTTGGTTAGTTGATGGCGAACCAGTTCAATTTCCACAACCATTTGGTAGAAGT
TTATATCCAGAGGAAACCTATGTAAATGAAATTGATGAAAAAACAGGTGCATCCTTGAAA
TTAACTTTATTAAATCCAAAAGGAAGAATATGGGCAATGGTTGCCGGAGGTGGTGCCTCT
GTTATCTATGCTGACACTGTTGCTGATTTAGGTTTTGGTAATGAGCTTGGAAATTATGGT
GAATATTCCGGTGATCCAAATGAAGAGGATACTCATAAATATGCATGCACTTTAATTTCA
TTGGCAACCAGAAATCCTGATTCTAGACCAAGAGCATTATTAATTGGTGGTGGTATTGCT
AATTTTACTGATGTGGCTGCCACTTTCAAAGGTATCACTAGAGCAATTAAAGAGTATCAT
GATGATATCATTAAATCAAATCTTTCCATTTTCGTTAGAAGAGGTGGTCCAAATTATCAA
TCGGGTTTACAACATATGAGAGAATA