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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE106
Library VF
(Link to library)
Clone ID VFE106
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16165-1
Original site URL
Representative seq. ID VFE106P
(Link to Original site)
Representative DNA sequence 
>VFE106 (VFE106Q) /CSM/VF/VFE1-A/VFE106Q.Seq.d/
ATCACAAAAAAAATAAAAAATGAAACTTTTAATTTTAATTATTTCTCTTTTAATTAGTTT
ATCAAGTTGTCATATTAAACAAATTATTTTAGATGAAGATACTAATTTTGTAGTATCTTG
GGATTACTCAAATTCTAATATTACTTTCGAGCTTGAGGGTGATTTTAAAGGTTGGTTTGC
ATTTGGTTATAGATGTACAAATTGTCCAGCCAATTCAATGGCAATGCAAATGGGACATCC
AGATTTAGTAGTAGTTACATTTGATAGTAATGGAGTTCCAACAGTTTATGATATGATTGA
AAGTATGGATTATGATCCAATGCAACAAAAGGATATTGATATCGGTGGCCAAAGTAATAT
ACTCACATTCGGAGGTTACCAAGGCAGCCATCATTCATTGATGTACTATACTCGTAAATT
AGTGACTGGTGATACTGTTGGTGATTATGATATCGACTTGAATGCTGATTTCTCTGTTAC
ATGGTATATTGGAAAAGATAATAAAATCGATTTTXXXXXXXXXXANTTAAAAAAAAAAGG
TTGGNAAAAAAAAAAACAAAAGAAAGAAATATAAAAATTCTCAAAAAGTAAGTTTTAAAT
TATCGACTTCCCCTCCCATCTCCCCTCTTCATATTTTCCCTCCCCCACTCCCCCTCCATT
TTAAAACTTATTCTTCCTCTCTCCCTCTCTTTCCTACCTCTTTGCTTCCTTTCNACCTTC
TCTTCTTTTTTTCT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
sqkk*KMKLLILIISLLISLSSCHIKQIILDEDTNFVVSWDYSNSNITFELEGDFKGWFA
FGYRCTNCPANSMAMQMGHPDLVVVTFDSNGVPTVYDMIESMDYDPMQQKDIDIGGQSNI
LTFGGYQGSHHSLMYYTRKLVTGDTVGDYDIDLNADFSVTWYIGKDNKIDF---

---XKKKRLXKKKTKERNIKILKK*vlnyrlplpsplfifslphspsilklilplslsfl
plcflstfssff
Translated Amino Acid sequence (All Frames) 
Frame A:
itkkiknetfnfnyfsfn*fiklsy*tnyfr*ry*fcsilgllkf*yyfra*g*f*rlvc
iwl*myklssqfngnangtsrfsssyi***wssnsl*yd*kygl*snatkgy*yrwpk*y
thirrlprqpsfidvlys*isdw*ycw*l*yrlec*flcymvywkr**nrf---

---x*kkkvgkkknkrkkyknsqkvsfklstsppisplhifppplplhfktyssslplfp
tsllpfxllfffs

Frame B:
sqkk*KMKLLILIISLLISLSSCHIKQIILDEDTNFVVSWDYSNSNITFELEGDFKGWFA
FGYRCTNCPANSMAMQMGHPDLVVVTFDSNGVPTVYDMIESMDYDPMQQKDIDIGGQSNI
LTFGGYQGSHHSLMYYTRKLVTGDTVGDYDIDLNADFSVTWYIGKDNKIDF---

---XKKKRLXKKKTKERNIKILKK*vlnyrlplpsplfifslphspsilklilplslsfl
plcflstfssff

Frame C:
hkknkk*nf*f*lflf*lvyqvvilnklf*mkilil*ylgitqilillsslrvilkvglh
lvidvqivqpiqwqckwdiqi***lhlivmefqqfmi*lkvwimiqcnkrilisvakviy
shsevtkaaiih*ctilvn**lvillvimist*mlisllhgilekiiksi---

---lkkkgwxkkkqkkei*kfskskf*iidfpshlpssyfpsptpppf*nlfflspslsy
lfasfxpsllff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE106 (VFE106Q) /CSM/VF/VFE1-A/VFE106Q.Seq.d/                        979   0.0
VFI808 (VFI808Q) /CSM/VF/VFI8-A/VFI808Q.Seq.d/                        785   0.0
VFE839 (VFE839Q) /CSM/VF/VFE8-B/VFE839Q.Seq.d/                        620   e-177
VFM867 (VFM867Q) /CSM/VF/VFM8-C/VFM867Q.Seq.d/                        200   2e-50
VFJ211 (VFJ211Q) /CSM/VF/VFJ2-A/VFJ211Q.Seq.d/                         38   0.18
VFI550 (VFI550Q) /CSM/VF/VFI5-C/VFI550Q.Seq.d/                         38   0.18
VFI279 (VFI279Q) /CSM/VF/VFI2-D/VFI279Q.Seq.d/                         38   0.18
VFH234 (VFH234Q) /CSM/VF/VFH2-B/VFH234Q.Seq.d/                         38   0.18
VFG109 (VFG109Q) /CSM/VF/VFG1-A/VFG109Q.Seq.d/                         38   0.18
VFD364 (VFD364Q) /CSM/VF/VFD3-C/VFD364Q.Seq.d/                         38   0.18
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC111000|AC111000.3 Homo sapiens BAC clone RP13-644M16 from 4, complete sequence.    44  0.37  3
AL161664|AL161664.8 Human chromosome 14 DNA sequence BAC C-2594L5 of library CalTech-D  from chromosome 14 of Homo sapiens (Human).    38  1.8  2
AL612339|AL612339.1 T3 end of clone 003AF09 of library SmBAC1 from strain Puerto-Rican  of Schistosoma mansoni.    34  2.0  2
BH175399|BH175399.1 003_K_17-rev SmBAC1 Schistosoma mansoni genomic clone 003K17 5', DNA sequence.    34  2.0  2
AL031746|AL031746.9 Plasmodium falciparum DNA from MAL1P3.        36  2.1  4
AL616943|AL616943.1 T3 end of clone 016AB06 of library SmBAC1 from strain Puerto-Rican  of Schistosoma mansoni.    34  2.2  2
BH179989|BH179989.1 016_C_11-rev SmBAC1 Schistosoma mansoni genomic clone 016C11 5', DNA sequence.    34  2.2  2
AC112059|AC112059.3 Rattus norvegicus clone CH230-193A21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  2.4  1
AC121380|AC121380.4 Rattus norvegicus clone CH230-57G8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  2.4  1
BH659218|BH659218.1 BOMAC41TR BO_2_3_KB Brassica oleracea genomic clone BOMAC41, DNA sequence.    44  2.4  1
dna update 2003. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000855_881(CP000855|pid:none) Thermococcus onnurineus NA1, com...    44   0.004
GM015893_218(GM015893|pid:none) Sequence 723 from Patent EP19234...    44   0.004
AP006878_1383(AP006878|pid:none) Thermococcus kodakarensis KOD1 ...    44   0.004
AY098944_1(AY098944|pid:none) Homarus americanus dopamine beta h...    41   0.033
(Q6NP60) RecName: Full=MOXD1 homolog 2;  &BT011070_1(BT011070|pi...    35   2.4
AJ965256_1351(AJ965256|pid:none) Dehalococcoides sp. CBDB1 compl...    35   3.1
AB041606_1(AB041606|pid:none) Mus musculus brain cDNA, clone MNC...    33   7.0
BC057652_1(BC057652|pid:none) Mus musculus monooxygenase, DBH-li...    33   7.0
AK081586_1(AK081586|pid:none) Mus musculus 16 days embryo head c...    33   7.0
CP001013_2586(CP001013|pid:none) Leptothrix cholodnii SP-6, comp...    33   9.1
protein update 2009. 2.10
PSORT 

 psg: 0.98  gvh: 0.77  alm: 0.47  top: 0.23  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum

>> prediction for VFE106 is exc
5' end seq. ID VFE106F
5' end seq. 
>VFE106F.Seq
ATCACAAAAAAAATAAAAAATGAAACTTTTAATTTTAATTATTTCTCTTTTAATTAGTTT
ATCAAGTTGTCATATTAAACAAATTATTTTAGATGAAGATACTAATTTTGTAGTATCTTG
GGATTACTCAAATTCTAATATTACTTTCGAGCTTGAGGGTGATTTTAAAGGTTGGTTTGC
ATTTGGTTATAGATGTACAAATTGTCCAGCCAATTCAATGGCAATGCAAATGGGACATCC
AGATTTAGTAGTAGTTACATTTGATAGTAATGGAGTTCCAACAGTTTATGATATGATTGA
AAGTATGGATTATGATCCAATGCAACAAAAGGATATTGATATCGGTGGCCAAAGTAATAT
ACTCACATTCGGAGGTTACCAAGGCAGCCATCATTCATTGATGTACTATACTCGTAAATT
AGTGACTGGTGATACTGTTGGTGATTATGATATCGACTTGAATGCTGATTTCTCTGTTAC
ATGGTATATTGGAAAAGATAATAAAATCGATTTT----------
Length of 5' end seq. 514
3' end seq. ID VFE106Z
3' end seq. 
>VFE106Z.Seq
----------ANTTAAAAAAAAAAGGTTGGNAAAAAAAAAAACAAAAGAAAGAAATATAA
AAATTCTCAAAAAGTAAGTTTTAAATTATCGACTTCCCCTCCCATCTCCCCTCTTCATAT
TTTCCCTCCCCCACTCCCCCTCCATTTTAAAACTTATTCTTCCTCTCTCCCTCTCTTTCC
TACCTCTTTGCTTCCTTTCNACCTTCTCTTCTTTTTTTCT
Length of 3' end seq. 210
Connected seq. ID VFE106P
Connected seq. 
>VFE106P.Seq
ATCACAAAAAAAATAAAAAATGAAACTTTTAATTTTAATTATTTCTCTTTTAATTAGTTT
ATCAAGTTGTCATATTAAACAAATTATTTTAGATGAAGATACTAATTTTGTAGTATCTTG
GGATTACTCAAATTCTAATATTACTTTCGAGCTTGAGGGTGATTTTAAAGGTTGGTTTGC
ATTTGGTTATAGATGTACAAATTGTCCAGCCAATTCAATGGCAATGCAAATGGGACATCC
AGATTTAGTAGTAGTTACATTTGATAGTAATGGAGTTCCAACAGTTTATGATATGATTGA
AAGTATGGATTATGATCCAATGCAACAAAAGGATATTGATATCGGTGGCCAAAGTAATAT
ACTCACATTCGGAGGTTACCAAGGCAGCCATCATTCATTGATGTACTATACTCGTAAATT
AGTGACTGGTGATACTGTTGGTGATTATGATATCGACTTGAATGCTGATTTCTCTGTTAC
ATGGTATATTGGAAAAGATAATAAAATCGATTTT----------ANTTAAAAAAAAAAGG
TTGGNAAAAAAAAAAACAAAAGAAAGAAATATAAAAATTCTCAAAAAGTAAGTTTTAAAT
TATCGACTTCCCCTCCCATCTCCCCTCTTCATATTTTCCCTCCCCCACTCCCCCTCCATT
TTAAAACTTATTCTTCCTCTCTCCCTCTCTTTCCTACCTCTTTGCTTCCTTTCNACCTTC
TCTTCTTTTTTTCT
Length of connected seq. 724
Full length Seq ID -
Full length Seq. -
Length of full length seq. -