VFD878 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFD878
Library	VF (Link to library)
Clone ID	VFD878 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13706-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFD8-D/VFD878Q.Seq.d/
Representative seq. ID	VFD878E (Link to Original site)
Representative DNA sequence	>VFD878 (VFD878Q) /CSM/VF/VFD8-D/VFD878Q.Seq.d/ GTTTGTCAGATTACACATATATACATATATACATATACAAAAATGTTGGGTCGTTTAAGA ACTGTTGTCAAAGCTTCATCATCAAATTCAATTAGAAATTATCTTGGATATACATCAGGA GTTCAAAAAAAAACAGTTACAGTTATTCCAGGTGATGGTATTGGTCCAGAGATTACATCA TCAGTTATGGGTGTATTCCAAGCAGCCAAAGTACCAATTGAATGGGAAATTTTCGATATT AGTGGTGGACAACCAATTTCACAAGAATTGATTGCATCAATTACTAGAAATAAAGTTGCA TTAAAGGGACCACTTTACACTGAGATTTTATCAGGATCTCAATCAAGAAATATGGAACTT AGAAAAGCATTAGATTTATATGCTCACGTTGTACCATGCAAACAAATTCCAGGTATCACC GCACGTCACGACGATGTTTTAGTTGATTTTGTTGTCATTAGAGAGAACACCCAAGGTGAG TACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACTTAAAATCATAACC AAAGAAGCATCAGAACGTATTGCTCGTTACGCATTCGAATATGCCAAAGCAAACGGTAGA AAGAAGGTAACAGCCGTTCACAAAGCAAACATTCAAAAACAAACCGATGGTCTCTTCCTT GCAACTTGCACTCAAATCGCCAAAGAGTATCCAGAAATTAAATTTGAAAACACCATCATT GATAATTGTTGTATGCAATTGGTTAAATCACCAGAACAATACGATGTTATGGTCACTCCA AACTTATATGGTAATATTGTCTCAAATATTGGTGCTGCTTTAGTTGGTGGTCCAGGTTTG GCTGGTGGTGCAAATGTTGGTGAGGGAAGTATTATTTTCGAAATGGGTGCTCATCACGTC GCTGCTGATATCGCCGGTAAAGATAAAGCAAATCCAACCGGTTTATTATTAGCCTCTGTT ATGATGTTAAAACATTTAGGCTTAAATGAACATGCTACCAAAGTTGAAAATGCCGTTAAA GCCGTCATTAAAGAAGGTACCTTAACTTCTGATATCGGTGGTAAATCTTCAACTAAACAA TTCACTGGCGCTGTCATGATTACATTAAAAAAATCAAAACTAAATTAATAAAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	VCQITHIYIYTYTKMLGRLRTVVKASSSNSIRNYLGYTSGVQKKTVTVIPGDGIGPEITS SVMGVFQAAKVPIEWEIFDISGGQPISQELIASITRNKVALKGPLYTEILSGSQSRNMEL RKALDLYAHVVPCKQIPGITARHDDVLVDFVVIRENTQGEYSGLEQVLTPGVVQSLKIIT KEASERIARYAFEYAKANGRKKVTAVHKANIQKQTDGLFLATCTQIAKEYPEIKFENTII DNCCMQLVKSPEQYDVMVTPNLYGNIVSNIGAALVGGPGLAGGANVGEGSIIFEMGAHHV AADIAGKDKANPTGLLLASVMMLKHLGLNEHATKVENAVKAVIKEGTLTSDIGGKSSTKQ FTGAVMITLKKSKLN**k
Translated Amino Acid sequence (All Frames)	Frame A: VCQITHIYIYTYTKMLGRLRTVVKASSSNSIRNYLGYTSGVQKKTVTVIPGDGIGPEITS SVMGVFQAAKVPIEWEIFDISGGQPISQELIASITRNKVALKGPLYTEILSGSQSRNMEL RKALDLYAHVVPCKQIPGITARHDDVLVDFVVIRENTQGEYSGLEQVLTPGVVQSLKIIT KEASERIARYAFEYAKANGRKKVTAVHKANIQKQTDGLFLATCTQIAKEYPEIKFENTII DNCCMQLVKSPEQYDVMVTPNLYGNIVSNIGAALVGGPGLAGGANVGEGSIIFEMGAHHV AADIAGKDKANPTGLLLASVMMLKHLGLNEHATKVENAVKAVIKEGTLTSDIGGKSSTKQ FTGAVMITLKKSKLN*k Frame B: fvrlhiytyihiqkcwvvellsklhhqiqleiildihqefkkkqlqlfqvmvlvqrlhh qlwvyskqpkyqlngkfsilvvdnqfhknlhqlleiklhrdhftlrfyqdlnqeiwnl ekhiymltlyhankfqvsphvttmflillslertpkvstvvsnkyhqvsnhlksp kkhqnvllvthsnmpkqtverrqpftkqtfknkpmvsslqlalkspksiqklnlktpsl iivvcnwlnhqnntmlwslqtymvilsqilvlllvvqvwlvvqmlvrevlfskwvlits llispvkikqiqpvyypllcniamnmlpklkmplkpslkkvpllisvvnlqlnn slalslhknqnink Frame C: lsdytyihiyiyknvgsfknccqsfiikfnklswiyirsskknsysysrwywsrdyii sygcipssqstnmgnfrywwttnftridcinykscikgttlhdfirisikkygt ksirficsrctmqtnsryhrtsrrcfsfcchrehprvqwsrtsidtrcspitnhnq rsirtycslriricqskrkegnsrsqskhsktnrwslpcnlhsnrqrvsrnikhhh llyaigitrtircyghskliwyclkywccfswwsrfgwwckcwgkyyfrngcssrr cyrrrsksnrfiislcydvktfrlktcyqskcrsrhrrylnfyrwifnti hwrchdyikkiktklik
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFD878 (VFD878Q) /CSM/VF/VFD8-D/VFD878Q.Seq.d/ 2077 0.0 VFL411 (VFL411Q) /CSM/VF/VFL4-A/VFL411Q.Seq.d/ 2072 0.0 VFM256 (VFM256Q) /CSM/VF/VFM2-C/VFM256Q.Seq.d/ 2070 0.0 VFA270 (VFA270Q) /CSM/VF/VFA2-C/VFA270Q.Seq.d/ 2064 0.0 CFI391 (CFI391Q) /CSM/CF/CFI3-D/CFI391Q.Seq.d/ 2064 0.0 VFL143 (VFL143Q) /CSM/VF/VFL1-B/VFL143Q.Seq.d/ 2058 0.0 VFI681 (VFI681Q) /CSM/VF/VFI6-D/VFI681Q.Seq.d/ 2058 0.0 VFF801 (VFF801Q) /CSM/VF/VFF8-A/VFF801Q.Seq.d/ 2052 0.0 VFN276 (VFN276Q) /CSM/VF/VFN2-D/VFN276Q.Seq.d/ 2050 0.0 VFK725 (VFK725Q) /CSM/VF/VFK7-B/VFK725Q.Seq.d/ 2050 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N G65029\|G65029.1 DH0538 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideum STS genomic 5', sequence tagged site. 575 e-165 2 BE451309\|BE451309.1 EST402197 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY17P13, mRNA sequence. 50 7e-06 2 BE434906\|BE434906.1 EST405984 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG24O19, mRNA sequence. 50 8e-06 2 AW738654\|AW738654.1 EST340081 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD8G3 5', mRNA sequence. 50 8e-06 2 AW617822\|AW617822.1 EST324221 L. hirsutum trichome, Cornell University Lycopersicon hirsutum cDNA clone cLHT24L9 5', mRNA sequence. 50 8e-06 2 BI925320\|BI925320.1 EST545209 tomato flower, buds 0-3 mm Lycopersicon esculentum cDNA clone cTOA26O11 5' end, mRNA sequence. 50 1e-05 2 BG643704\|BG643704.1 EST511898 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF32G6 5' sequence, mRNA sequence. 50 1e-05 2 BI935352\|BI935352.1 EST555241 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD22J13 5' end, mRNA sequence. 50 1e-05 2 X67310\|X67310.1 S.tuberosum mRNA for beta-isopropylmalate dehydrogenase. 50 2e-05 2 BU634964\|BU634964.1 013E05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence. 44 4e-05 2
dna update	2003. 9.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54B68) RecName: Full=Isocitrate dehydrogenase [NAD] regulatory... 644 0.0 (Q55BI2) RecName: Full=Isocitrate dehydrogenase [NAD] regulatory... 333 9e-90 BT039856_1(BT039856\|pid:none) Zea mays full-length cDNA clone ZM... 322 2e-86 BT036874_1(BT036874\|pid:none) Zea mays full-length cDNA clone ZM... 319 1e-85 EU965102_1(EU965102\|pid:none) Zea mays clone 283827 isocitrate d... 318 2e-85 BT066613_1(BT066613\|pid:none) Zea mays full-length cDNA clone ZM... 317 5e-85 CR855156_11(CR855156\|pid:none) Oryza sativa genomic DNA, chromos... 317 5e-85 BT034072_1(BT034072\|pid:none) Zea mays full-length cDNA clone ZM... 317 6e-85 AB189167_1(AB189167\|pid:none) Oryza sativa Japonica Group OsIDHa... 317 6e-85 (O13302) RecName: Full=Isocitrate dehydrogenase [NAD] subunit 1,... 316 8e-85
protein update	2009. 7.10
PSORT	psg: 0.83 gvh: 0.39 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.06 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: mitochondrial 28.0 %: cytoplasmic 24.0 %: nuclear 4.0 %: vacuolar >> prediction for VFD878 is mit
5' end seq. ID	VFD878F
5' end seq.	>VFD878F.Seq GTTTGTCAGATTACACATATATACATATATACATATACAAAAATGTTGGGTCGTTTAAGA ACTGTTGTCAAAGCTTCATCATCAAATTCAATTAGAAATTATCTTGGATATACATCAGGA GTTCAAAAAAAAACAGTTACAGTTATTCCAGGTGATGGTATTGGTCCAGAGATTACATCA TCAGTTATGGGTGTATTCCAAGCAGCCAAAGTACCAATTGAATGGGAAATTTTCGATATT AGTGGTGGACAACCAATTTCACAAGAATTGATTGCATCAATTACTAGAAATAAAGTTGCA TTAAAGGGACCACTTTACACTGAGATTTTATCAGGATCTCAATCAAGAAATATGGAACTT AGAAAAGCATTAGATTTATATGCTCACGTTGTACCATGCAAACAAATTCCAGGTATCACC GCACGTCACGACGATGTTTTAGTTGATTTTGTTGTCATTAGAGAGAACACCCAAGGTGAG TACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACTTAAAATCATAACC AAAGAAGCATCAGAACGTATTGCTCGTTACGCATTCGAATATGCCAAAGCAAAC------ ----
Length of 5' end seq.	594
3' end seq. ID	VFD878Z
3' end seq.	>VFD878Z.Seq ----------GTTGTCATTAGAGAGAACACCCAAGGTGAGTACAGTGGTCTCGAACAAGT ATTGACACCAGGTGTAGTCCAATCACTTAAAATCATAACCAAAGAAGCATCAGAACGTAT TGCTCGTTACGCATTCGAATATGCCAAAGCAAACGGTAGAAAGAAGGTAACAGCCGTTCA CAAAGCAAACATTCAAAAACAAACCGATGGTCTCTTCCTTGCAACTTGCACTCAAATCGC CAAAGAGTATCCAGAAATTAAATTTGAAAACACCATCATTGATAATTGTTGTATGCAATT GGTTAAATCACCAGAACAATACGATGTTATGGTCACTCCAAACTTATATGGTAATATTGT CTCAAATATTGGTGCTGCTTTAGTTGGTGGTCCAGGTTTGGCTGGTGGTGCAAATGTTGG TGAGGGAAGTATTATTTTCGAAATGGGTGCTCATCACGTCGCTGCTGATATCGCCGGTAA AGATAAAGCAAATCCAACCGGTTTATTATTAGCCTCTGTTATGATGTTAAAACATTTAGG CTTAAATGAACATGCTACCAAAGTTGAAAATGCCGTTAAAGCCGTCATTAAAGAAGGTAC CTTAACTTCTGATATCGGTGGTAAATCTTCAACTAAACAATTCACTGGCGCTGTCATGAT TACATTAAAAAAATCAAAACTAAATTAATAAAAA
Length of 3' end seq.	684
Connected seq. ID	VFD878P
Connected seq.	>VFD878P.Seq GTTTGTCAGATTACACATATATACATATATACATATACAAAAATGTTGGGTCGTTTAAGA ACTGTTGTCAAAGCTTCATCATCAAATTCAATTAGAAATTATCTTGGATATACATCAGGA GTTCAAAAAAAAACAGTTACAGTTATTCCAGGTGATGGTATTGGTCCAGAGATTACATCA TCAGTTATGGGTGTATTCCAAGCAGCCAAAGTACCAATTGAATGGGAAATTTTCGATATT AGTGGTGGACAACCAATTTCACAAGAATTGATTGCATCAATTACTAGAAATAAAGTTGCA TTAAAGGGACCACTTTACACTGAGATTTTATCAGGATCTCAATCAAGAAATATGGAACTT AGAAAAGCATTAGATTTATATGCTCACGTTGTACCATGCAAACAAATTCCAGGTATCACC GCACGTCACGACGATGTTTTAGTTGATTTTGTTGTCATTAGAGAGAACACCCAAGGTGAG TACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACTTAAAATCATAACC AAAGAAGCATCAGAACGTATTGCTCGTTACGCATTCGAATATGCCAAAGCAAAC------ ----GTTGTCATTAGAGAGAACACCCAAGGTGAGTACAGTGGTCTCGAACAAGTATTGAC ACCAGGTGTAGTCCAATCACTTAAAATCATAACCAAAGAAGCATCAGAACGTATTGCTCG TTACGCATTCGAATATGCCAAAGCAAACGGTAGAAAGAAGGTAACAGCCGTTCACAAAGC AAACATTCAAAAACAAACCGATGGTCTCTTCCTTGCAACTTGCACTCAAATCGCCAAAGA GTATCCAGAAATTAAATTTGAAAACACCATCATTGATAATTGTTGTATGCAATTGGTTAA ATCACCAGAACAATACGATGTTATGGTCACTCCAAACTTATATGGTAATATTGTCTCAAA TATTGGTGCTGCTTTAGTTGGTGGTCCAGGTTTGGCTGGTGGTGCAAATGTTGGTGAGGG AAGTATTATTTTCGAAATGGGTGCTCATCACGTCGCTGCTGATATCGCCGGTAAAGATAA AGCAAATCCAACCGGTTTATTATTAGCCTCTGTTATGATGTTAAAACATTTAGGCTTAAA TGAACATGCTACCAAAGTTGAAAATGCCGTTAAAGCCGTCATTAAAGAAGGTACCTTAAC TTCTGATATCGGTGGTAAATCTTCAACTAAACAATTCACTGGCGCTGTCATGATTACATT AAAAAAATCAAAACTAAATTAATAAAAA
Length of connected seq.	1278
Full length Seq ID	VFD878E
Full length Seq.	>VFD878E.Seq GTTTGTCAGATTACACATATATACATATATACATATACAAAAATGTTGGGTCGTTTAAGA ACTGTTGTCAAAGCTTCATCATCAAATTCAATTAGAAATTATCTTGGATATACATCAGGA GTTCAAAAAAAAACAGTTACAGTTATTCCAGGTGATGGTATTGGTCCAGAGATTACATCA TCAGTTATGGGTGTATTCCAAGCAGCCAAAGTACCAATTGAATGGGAAATTTTCGATATT AGTGGTGGACAACCAATTTCACAAGAATTGATTGCATCAATTACTAGAAATAAAGTTGCA TTAAAGGGACCACTTTACACTGAGATTTTATCAGGATCTCAATCAAGAAATATGGAACTT AGAAAAGCATTAGATTTATATGCTCACGTTGTACCATGCAAACAAATTCCAGGTATCACC GCACGTCACGACGATGTTTTAGTTGATTTTGTTGTCATTAGAGAGAACACCCAAGGTGAG TACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACTTAAAATCATAACC AAAGAAGCATCAGAACGTATTGCTCGTTACGCATTCGAATATGCCAAAGCAAACGGTAGA AAGAAGGTAACAGCCGTTCACAAAGCAAACATTCAAAAACAAACCGATGGTCTCTTCCTT GCAACTTGCACTCAAATCGCCAAAGAGTATCCAGAAATTAAATTTGAAAACACCATCATT GATAATTGTTGTATGCAATTGGTTAAATCACCAGAACAATACGATGTTATGGTCACTCCA AACTTATATGGTAATATTGTCTCAAATATTGGTGCTGCTTTAGTTGGTGGTCCAGGTTTG GCTGGTGGTGCAAATGTTGGTGAGGGAAGTATTATTTTCGAAATGGGTGCTCATCACGTC GCTGCTGATATCGCCGGTAAAGATAAAGCAAATCCAACCGGTTTATTATTAGCCTCTGTT ATGATGTTAAAACATTTAGGCTTAAATGAACATGCTACCAAAGTTGAAAATGCCGTTAAA GCCGTCATTAAAGAAGGTACCTTAACTTCTGATATCGGTGGTAAATCTTCAACTAAACAA TTCACTGGCGCTGTCATGATTACATTAAAAAAATCAAAACTAAATTAATAAAAA
Length of full length seq.	1134

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas