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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM364
Library AF
(Link to library)
Clone ID AFM364
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig -
Original site URL
Representative seq. ID AFM364P
(Link to Original site)
Representative DNA sequence 
>AFM364 (AFM364Q) /CSM/AF/AFM3-C/AFM364Q.Seq.d/
AATNAATAATAATAAAATGCCTTTAAATATACAATACAAAAGAAGAATTACAACAACAAT
AGTAAACCACCAAAAACAAATCAAAATGAAAGTGGTGGTTCTGGTCTTGGTTTAAGAGAA
TTACATAAAAATCCAAATGTTGGAAATGAACAATATTTTACAAGTTTCCAAAAGTATGTA
CACCCAAGTAATGGTCATGAAGAAATTCAAAGAGAAGATTTTCATACTTATCATCCAGAC
CAAGATTACAAAGATAAAGAACCACAAGGAGTGAAACCAAAAGAAGTGAAGTCAACACCC
ACTACAAACAATACAAATGATAACAATTTTATTCATCCATAATGTTTTTAAAAGATAGTA
TGAAACTATAAATAAAAACAAATTATAAAANNNAAAXXXXXXXXXXTTGGTTGTNATGGT
GGTTTAATNAATAATGCNTTTNNTTATATCATTAAAANCAAGGGTATTGNCNNTNAAAGT
AGTTATCCATATNNTGNTNAANNTGGTTCNACATGTTTATTCAATAAATNTGATATTGGT
GCANCCATTAAAGGTTATGTTAACATT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
xiiikcl*iyntkeelqqq**ttknksk*kwwfwswfkrit*kskcwk*tifykfpkvct
pk*ws*rnskrrfsylssrprlqr*rttrsetkrsevnthykqyk**qfyssimflkdsm
kl*IKTNYKXX---

---GCXGGLXNNAFXYIIKXKGIXXXSSYPYXXXXGSTCLFNKXDIGAXIKGYVNI
Translated Amino Acid sequence (All Frames) 
Frame A:
nx***nafkytiqkknynnnskppktnqnesggsglglrelhknpnvgneqyftsfqkyv
hpsngheeiqredfhtyhpdqdykdkepqgvkpkevkstpttnntndnnfihp*cf*kiv
*nyk*kqiikxk---

---lvvmvv*ximxxxislkxrvlxxkvvihxxxxxvxhvysinxilvxplkvmlt

Frame B:
xnnnkmplniqykrritttivnhqkqikmkvvvlvlv*enyikiqmlemnnilqvsksmy
tqvmvmkkfkekifiliiqtkitkiknhke*nqkk*sqhplqtiqmitilfihnvfkr*y
etinknkl*xx---

---wlxwwfnx*cxxlyh*xqgyxxxk*lsixxxxwfxmfiq*x*ywcxh*rlc*h

Frame C:
xiiikcl*iyntkeelqqq**ttknksk*kwwfwswfkrit*kskcwk*tifykfpkvct
pk*ws*rnskrrfsylssrprlqr*rttrsetkrsevnthykqyk**qfyssimflkdsm
kl*IKTNYKXX---

---GCXGGLXNNAFXYIIKXKGIXXXSSYPYXXXXGSTCLFNKXDIGAXIKGYVNI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM364 (AFM364Q) /CSM/AF/AFM3-C/AFM364Q.Seq.d/                        898   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                        176   2e-43
SSG634 (SSG634Q) /CSM/SS/SSG6-B/SSG634Q.Seq.d/                        176   2e-43
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                        176   2e-43
SFL242 (SFL242Q) /CSM/SF/SFL2-B/SFL242Q.Seq.d/                        176   2e-43
SFK574 (SFK574Q) /CSM/SF/SFK5-D/SFK574Q.Seq.d/                        176   2e-43
SFJ429 (SFJ429Q) /CSM/SF/SFJ4-B/SFJ429Q.Seq.d/                        176   2e-43
SFI656 (SFI656Q) /CSM/SF/SFI6-C/SFI656Q.Seq.d/                        176   2e-43
SFI602 (SFI602Q) /CSM/SF/SFI6-A/SFI602Q.Seq.d/                        176   2e-43
SFI431 (SFI431Q) /CSM/SF/SFI4-B/SFI431Q.Seq.d/                        176   2e-43
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329627) Dictyostelium discoideum cDNA clone:dda25p15, 5' ...   601   e-172  2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   593   e-165  1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina...   206   7e-49  1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462.        206   7e-49  1
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524.        206   7e-49  1
(BJ403007) Dictyostelium discoideum cDNA clone:dds18c02, 3' ...   206   7e-49  1
(BJ402921) Dictyostelium discoideum cDNA clone:dds18o14, 3' ...   206   7e-49  1
(BJ402591) Dictyostelium discoideum cDNA clone:dds17n08, 3' ...   206   7e-49  1
(BJ401777) Dictyostelium discoideum cDNA clone:dds19j08, 3' ...   206   7e-49  1
(BJ401444) Dictyostelium discoideum cDNA clone:dds23c12, 3' ...   206   7e-49  1
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_69(AC116305|pid:none) Dictyostelium discoideum chromoso...   143   3e-33
(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...    84   3e-15
(Q94504) RecName: Full=Cysteine proteinase 7;          EC=3.4.22...    57   2e-07
EF567049_1(EF567049|pid:none) Heterodera avenae isolate Ca_Ha ca...    57   3e-07
EF567052_1(EF567052|pid:none) Heterodera glycines isolate Ca_HG_...    57   3e-07
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...    57   3e-07
EF567051_1(EF567051|pid:none) Heterodera glycines isolate Ca_HG_...    57   3e-07
(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...    56   6e-07
AC116305_68(AC116305|pid:none) Dictyostelium discoideum chromoso...    55   2e-06
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    54   3e-06
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM364 is

5' end seq. ID AFM364F
5' end seq. 
>AFM364F.Seq
AATNAATAATAATAAAATGCCTTTAAATATACAATACAAAAGAAGAATTACAACAACAAT
AGTAAACCACCAAAAACAAATCAAAATGAAAGTGGTGGTTCTGGTCTTGGTTTAAGAGAA
TTACATAAAAATCCAAATGTTGGAAATGAACAATATTTTACAAGTTTCCAAAAGTATGTA
CACCCAAGTAATGGTCATGAAGAAATTCAAAGAGAAGATTTTCATACTTATCATCCAGAC
CAAGATTACAAAGATAAAGAACCACAAGGAGTGAAACCAAAAGAAGTGAAGTCAACACCC
ACTACAAACAATACAAATGATAACAATTTTATTCATCCATAATGTTTTTAAAAGATAGTA
TGAAACTATAAATAAAAACAAATTATAAAANNNAAAXXXXXXXXXX
Length of 5' end seq. 406
3' end seq. ID AFM364Z
3' end seq. 
>AFM364Z.Seq
XXXXXXXXXXTTGGTTGTNATGGTGGTTTAATNAATAATGCNTTTNNTTATATCATTAAA
ANCAAGGGTATTGNCNNTNAAAGTAGTTATCCATATNNTGNTNAANNTGGTTCNACATGT
TTATTCAATAAATNTGATATTGGTGCANCCATTAAAGGTTATGTTAACATT
Length of 3' end seq. 171
Connected seq. ID AFM364P
Connected seq. 
>AFM364P.Seq
AATNAATAATAATAAAATGCCTTTAAATATACAATACAAAAGAAGAATTACAACAACAAT
AGTAAACCACCAAAAACAAATCAAAATGAAAGTGGTGGTTCTGGTCTTGGTTTAAGAGAA
TTACATAAAAATCCAAATGTTGGAAATGAACAATATTTTACAAGTTTCCAAAAGTATGTA
CACCCAAGTAATGGTCATGAAGAAATTCAAAGAGAAGATTTTCATACTTATCATCCAGAC
CAAGATTACAAAGATAAAGAACCACAAGGAGTGAAACCAAAAGAAGTGAAGTCAACACCC
ACTACAAACAATACAAATGATAACAATTTTATTCATCCATAATGTTTTTAAAAGATAGTA
TGAAACTATAAATAAAAACAAATTATAAAANNNAAA----------TTGGTTGTNATGGT
GGTTTAATNAATAATGCNTTTNNTTATATCATTAAAANCAAGGGTATTGNCNNTNAAAGT
AGTTATCCATATNNTGNTNAANNTGGTTCNACATGTTTATTCAATAAATNTGATATTGGT
GCANCCATTAAAGGTTATGTTAACATT
Length of connected seq. 557
Full length Seq ID -
Full length Seq. -
Length of full length seq. -