NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM362
Library AF
(Link to library)
Clone ID AFM362
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM362P
(Link to Original site)
Representative DNA sequence 
>AFM362 (AFM362Q) /CSM/AF/AFM3-C/AFM362Q.Seq.d/
TGGAATATTTTTTTTTTTGATTTAAAATTAATATGTTAAAAAATATTATTAATAAAAAGA
ATTTATTTATTAATAATCAACAAAACATNTTTCAAATAATTAAAAGAAATAAAATGACAG
ATAGTNCAGTTGATAATAAAGGATATATTGTAGGTATCTACGAGAATGAAGAGTTTACAC
CATTAGGTCAACAGTTAAATGAAAAGACAAATGGTCATTTATTGAAGAGTNTTAAATTAT
CAGATNCCAAAGGTAAAGTTGGAGATAATTTAGTTTTATACAATGTCACACCAGAGGTTT
CAAGAGTTGCAATCGTTGGCTTGGGTAAGAAAGAAAATAATAATAGCNCCACCTATGAAA
AGAATGAAAACACTCGTAAAGCAATCGGTAGNGGNGTTAAAGCATTGAAATCAAAGAATG
CCACCCATTTAACCATCGATTCAAACATTGGNGATGCCAAACAAACTGCANAGGGNGCAT
TCCTTTCAAACTTCAAATTTGATTTCAAAACAGGXXXXXXXXXXCATCTGCCGATGGTAA
GGATTCAATAGTTTATGTTGGTAAAGGTATCACTTTTGATAGTGGTGGTATTTCAATTAA
ACCATCAGCAAATATGGGTTTAATGAAGGGTGATATGGGTGGTGCTGCCACTGCTGTCTC
TGCAATGTTTGGTGTTGCTTCATTGGGTTTAAAGGTCAATTTAATTACAATCACTCCATT
ATGTGAAAATATGCCATCAGGTAAAGCAACTAAACCAGGTGATATCCTTACCGCTGCAAA
TGGTAAAACCGTTGAAGTCGACAATACCGATGCCGAGGGTCGTTTAATCTTGGGTGATGC
TTTACATTATGCTTGTTCATTCAAACCAACTCATATCATTGATATCGCTACCTTGACTGG
TGCCATCGATGTTGCCTTGGGTCAACATTATGCTGGTTGTTTTACAACCACCGACTCACT
TTGGGATCAATTAAATGAATGTGGTAACATTAGTGGTGAAAGATTATGGAGAATGCCATT
GATTCCAGAATATCGTAAACAAATGGAAACCTCAAAAGTTGCCGATTTAATCAATTCTGC
TGGTCGTTCAGGTGGTGCTTGTTGTGCTGCTGGTTTCCTTAAAGAATTCATTACAGCCGA
TCAATCTTGGTCTCACCTTGATATTGCTGGTGTTATGTCATCATCTGAAGATGGTCCATA
CATTAGAAAAGGTATGACTGGTAAACCAACTCGTACTTTAATAGAATTNCTAAAAAGAAT
CAACAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
eyfff*FKINMLKNIINKKNLFINNQQNXFQIIKRNKMTDSXVDNKGYIVGIYENEEFTP
LGQQLNEKTNGHLLKSXKLSDXKGKVGDNLVLYNVTPEVSRVAIVGLGKKENNNSXTYEK
NENTRKAIGXGVKALKSKNATHLTIDSNIGDAKQTAXGAFLSNFKFDFKT---

---SADGKDSIVYVGKGITFDSGGISIKPSANMGLMKGDMGGAATAVSAMFGVASLGLKV
NLITITPLCENMPSGKATKPGDILTAANGKTVEVDNTDAEGRLILGDALHYACSFKPTHI
IDIATLTGAIDVALGQHYAGCFTTTDSLWDQLNECGNISGERLWRMPLIPEYRKQMETSK
VADLINSAGRSGGACCAAGFLKEFITADQSWSHLDIAGVMSSSEDGPYIRKGMTGKPTRT
LIEXLKRIN
Translated Amino Acid sequence (All Frames) 
Frame A:
wnifffdlklic*killikriylliinktxfk*lkeik*qivqliikdil*vstrmkslh
h*vns*mkrqmviy*rvlnyqxpkvkleii*fytmshqrfqelqslawvrkkiiiappmk
rmktlvkqsvxxlkh*nqrmppi*psiqtlxmpnklxrxhsfqtsnliskq---

---hlpmvriq*fmlvkvsllivvvfqlnhqqiwv**rviwvvlpllslqclvllhwv*r
si*lqslhyvkichqvkqlnqvislplqmvkplkstipmprvv*swvmlyimlvhsnqli
slislp*lvpsmlpwvnimlvvlqppthfgin*mnvvtlvvkdygech*fqnivnkwkpq
klpi*sillvvqvvlvvllvslknslqpinlgltlillvlchhlkmvhtlekv*lvnqlv
l**nx*kest

Frame B:
gifffli*n*yvkkyy**kefiy**stkhxsnn*kk*ndr*xs***riycrylre*rvyt
irstvk*kdkwsfieex*iirxqr*swr*fsfiqchtrgfkscnrwlg*erk***xhl*k
e*khs*snr*xx*sieikechpfnhrfkhwxcqtncxgxipfklqi*fqnr---

---icrw*gfnslcw*ryhf**wwyfn*tiskygfneg*ygwcchcclcnvwccfigfkg
qfnynhsim*kyair*sn*tr*ypyrckw*nr*srqyrcrgsfnlg*cftlclfiqtnsy
h*yryldwchrcclgstlcwlfynhrltlgsik*mw*h*w*kimenaidsris*tngnlk
scrfnqfcwsfrwcllccwfp*rihysrsilvsp*ycwcyvii*rwsih*krydw*tnsy
fnrixkknqq

Frame C:
eyfff*FKINMLKNIINKKNLFINNQQNXFQIIKRNKMTDSXVDNKGYIVGIYENEEFTP
LGQQLNEKTNGHLLKSXKLSDXKGKVGDNLVLYNVTPEVSRVAIVGLGKKENNNSXTYEK
NENTRKAIGXGVKALKSKNATHLTIDSNIGDAKQTAXGAFLSNFKFDFKT---

---SADGKDSIVYVGKGITFDSGGISIKPSANMGLMKGDMGGAATAVSAMFGVASLGLKV
NLITITPLCENMPSGKATKPGDILTAANGKTVEVDNTDAEGRLILGDALHYACSFKPTHI
IDIATLTGAIDVALGQHYAGCFTTTDSLWDQLNECGNISGERLWRMPLIPEYRKQMETSK
VADLINSAGRSGGACCAAGFLKEFITADQSWSHLDIAGVMSSSEDGPYIRKGMTGKPTRT
LIEXLKRIN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM362 (AFM362Q) /CSM/AF/AFM3-C/AFM362Q.Seq.d/                       2232   0.0
VFG447 (VFG447Q) /CSM/VF/VFG4-B/VFG447Q.Seq.d/                       1465   0.0
AFG522 (AFG522Q) /CSM/AF/AFG5-A/AFG522Q.Seq.d/                       1465   0.0
CHR223 (CHR223Q) /CSM/CH/CHR2-A/CHR223Q.Seq.d/                       1449   0.0
AFE161 (AFE161Q) /CSM/AF/AFE1-C/AFE161Q.Seq.d/                       1400   0.0
CFK183 (CFK183Q) /CSM/CF/CFK1-D/CFK183Q.Seq.d/                       1392   0.0
AFO810 (AFO810Q) /CSM/AF/AFO8-A/AFO810Q.Seq.d/                       1372   0.0
VFF745 (VFF745Q) /CSM/VF/VFF7-B/VFF745Q.Seq.d/                       1370   0.0
SFH132 (SFH132Q) /CSM/SF/SFH1-B/SFH132Q.Seq.d/                       1364   0.0
AFK487 (AFK487Q) /CSM/AF/AFK4-D/AFK487Q.Seq.d/                       1344   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ431248) Dictyostelium discoideum cDNA clone:ddv13n12, 3' ...  1465   0.0    1
(BJ346950) Dictyostelium discoideum cDNA clone:dda25l15, 3' ...  1465   0.0    1
(BJ342468) Dictyostelium discoideum cDNA clone:dda14k05, 3' ...  1465   0.0    1
(AY581145) Dictyostelium discoideum leucine aminopeptidase (...  1435   0.0    2
(BJ342122) Dictyostelium discoideum cDNA clone:dda9i15, 3' e...  1400   0.0    1
(BJ385796) Dictyostelium discoideum cDNA clone:ddc56m06, 3' ...  1368   0.0    2
(BJ428545) Dictyostelium discoideum cDNA clone:ddv12j11, 3' ...  1354   0.0    2
(BJ376260) Dictyostelium discoideum cDNA clone:ddc21e21, 3' ...  1344   0.0    3
(BJ400929) Dictyostelium discoideum cDNA clone:dds15o07, 3' ...  1314   0.0    3
(BJ345197) Dictyostelium discoideum cDNA clone:dda21n22, 3' ...  1314   0.0    3
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5V9F0) RecName: Full=Cytosol aminopeptidase;          EC=3.4.1...   455   e-126
BX901913_3(BX901913|pid:none) Zebrafish DNA sequence from clone ...   273   1e-71
BC068707_1(BC068707|pid:none) Xenopus laevis hypothetical protei...   272   2e-71
AB170537_1(AB170537|pid:none) Macaca fascicularis brain cDNA clo...   269   1e-70
AF061738_1(AF061738|pid:none) Homo sapiens leucine aminopeptidas...   269   1e-70
AK022055_1(AK022055|pid:none) Homo sapiens cDNA FLJ11993 fis, cl...   269   1e-70
AJ720335_1(AJ720335|pid:none) Gallus gallus mRNA for hypothetica...   267   5e-70
CT010237_1(CT010237|pid:none) Mus musculus full open reading fra...   266   8e-70
CT010301_1(CT010301|pid:none) Mus musculus full open reading fra...   266   8e-70
AK010502_1(AK010502|pid:none) Mus musculus ES cells cDNA, RIKEN ...   266   8e-70
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM362 is

5' end seq. ID AFM362F
5' end seq. 
>AFM362F.Seq
TGGAATATTTTTTTTTTTGATTTAAAATTAATATGTTAAAAAATATTATTAATAAAAAGA
ATTTATTTATTAATAATCAACAAAACATNTTTCAAATAATTAAAAGAAATAAAATGACAG
ATAGTNCAGTTGATAATAAAGGATATATTGTAGGTATCTACGAGAATGAAGAGTTTACAC
CATTAGGTCAACAGTTAAATGAAAAGACAAATGGTCATTTATTGAAGAGTNTTAAATTAT
CAGATNCCAAAGGTAAAGTTGGAGATAATTTAGTTTTATACAATGTCACACCAGAGGTTT
CAAGAGTTGCAATCGTTGGCTTGGGTAAGAAAGAAAATAATAATAGCNCCACCTATGAAA
AGAATGAAAACACTCGTAAAGCAATCGGTAGNGGNGTTAAAGCATTGAAATCAAAGAATG
CCACCCATTTAACCATCGATTCAAACATTGGNGATGCCAAACAAACTGCANAGGGNGCAT
TCCTTTCAAACTTCAAATTTGATTTCAAAACAGGXXXXXXXXXX
Length of 5' end seq. 524
3' end seq. ID AFM362Z
3' end seq. 
>AFM362Z.Seq
XXXXXXXXXXCATCTGCCGATGGTAAGGATTCAATAGTTTATGTTGGTAAAGGTATCACT
TTTGATAGTGGTGGTATTTCAATTAAACCATCAGCAAATATGGGTTTAATGAAGGGTGAT
ATGGGTGGTGCTGCCACTGCTGTCTCTGCAATGTTTGGTGTTGCTTCATTGGGTTTAAAG
GTCAATTTAATTACAATCACTCCATTATGTGAAAATATGCCATCAGGTAAAGCAACTAAA
CCAGGTGATATCCTTACCGCTGCAAATGGTAAAACCGTTGAAGTCGACAATACCGATGCC
GAGGGTCGTTTAATCTTGGGTGATGCTTTACATTATGCTTGTTCATTCAAACCAACTCAT
ATCATTGATATCGCTACCTTGACTGGTGCCATCGATGTTGCCTTGGGTCAACATTATGCT
GGTTGTTTTACAACCACCGACTCACTTTGGGATCAATTAAATGAATGTGGTAACATTAGT
GGTGAAAGATTATGGAGAATGCCATTGATTCCAGAATATCGTAAACAAATGGAAACCTCA
AAAGTTGCCGATTTAATCAATTCTGCTGGTCGTTCAGGTGGTGCTTGTTGTGCTGCTGGT
TTCCTTAAAGAATTCATTACAGCCGATCAATCTTGGTCTCACCTTGATATTGCTGGTGTT
ATGTCATCATCTGAAGATGGTCCATACATTAGAAAAGGTATGACTGGTAAACCAACTCGT
ACTTTAATAGAATTNCTAAAAAGAATCAACAA
Length of 3' end seq. 752
Connected seq. ID AFM362P
Connected seq. 
>AFM362P.Seq
TGGAATATTTTTTTTTTTGATTTAAAATTAATATGTTAAAAAATATTATTAATAAAAAGA
ATTTATTTATTAATAATCAACAAAACATNTTTCAAATAATTAAAAGAAATAAAATGACAG
ATAGTNCAGTTGATAATAAAGGATATATTGTAGGTATCTACGAGAATGAAGAGTTTACAC
CATTAGGTCAACAGTTAAATGAAAAGACAAATGGTCATTTATTGAAGAGTNTTAAATTAT
CAGATNCCAAAGGTAAAGTTGGAGATAATTTAGTTTTATACAATGTCACACCAGAGGTTT
CAAGAGTTGCAATCGTTGGCTTGGGTAAGAAAGAAAATAATAATAGCNCCACCTATGAAA
AGAATGAAAACACTCGTAAAGCAATCGGTAGNGGNGTTAAAGCATTGAAATCAAAGAATG
CCACCCATTTAACCATCGATTCAAACATTGGNGATGCCAAACAAACTGCANAGGGNGCAT
TCCTTTCAAACTTCAAATTTGATTTCAAAACAGG----------CATCTGCCGATGGTAA
GGATTCAATAGTTTATGTTGGTAAAGGTATCACTTTTGATAGTGGTGGTATTTCAATTAA
ACCATCAGCAAATATGGGTTTAATGAAGGGTGATATGGGTGGTGCTGCCACTGCTGTCTC
TGCAATGTTTGGTGTTGCTTCATTGGGTTTAAAGGTCAATTTAATTACAATCACTCCATT
ATGTGAAAATATGCCATCAGGTAAAGCAACTAAACCAGGTGATATCCTTACCGCTGCAAA
TGGTAAAACCGTTGAAGTCGACAATACCGATGCCGAGGGTCGTTTAATCTTGGGTGATGC
TTTACATTATGCTTGTTCATTCAAACCAACTCATATCATTGATATCGCTACCTTGACTGG
TGCCATCGATGTTGCCTTGGGTCAACATTATGCTGGTTGTTTTACAACCACCGACTCACT
TTGGGATCAATTAAATGAATGTGGTAACATTAGTGGTGAAAGATTATGGAGAATGCCATT
GATTCCAGAATATCGTAAACAAATGGAAACCTCAAAAGTTGCCGATTTAATCAATTCTGC
TGGTCGTTCAGGTGGTGCTTGTTGTGCTGCTGGTTTCCTTAAAGAATTCATTACAGCCGA
TCAATCTTGGTCTCACCTTGATATTGCTGGTGTTATGTCATCATCTGAAGATGGTCCATA
CATTAGAAAAGGTATGACTGGTAAACCAACTCGTACTTTAATAGAATTNCTAAAAAGAAT
CAACAA
Length of connected seq. 1256
Full length Seq ID -
Full length Seq. -
Length of full length seq. -