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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM361
Library AF
(Link to library)
Clone ID AFM361
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM361 (AFM361Q) /CSM/AF/AFM3-C/AFM361Q.Seq.d/
XXXXXXXXXXAGTTATCAGATTCCTGTTTTGTTATCTCTTCAACTTTTTAAATCATTAAT
GGTTCTATCGGTAGTGAATGATGTCAAACAAAAATCAGCTGAAAATATCATCTCATTAGG
TCGTTCAATCGCCGANCAATTATCAATATTAAAATTACAATCAACTTCAATCTTACCTTC
AAGAGTTGGTCAAAATTTATCATCAAAAGAAGAACGTGAGGTTAAATGAATCTGCTTCAA
ATCAATTACGTTCATCAATTGATTATTATATTTCAAATAATAAATCTGATACAACTACTA
CTACTACAACTACAACTACAACTACAAATAGTGAGAATAATAATATTACAGATTTAATTT
CATCACCAAAAAGATTACCAAAAGAAGATAAAACATTACCATTATTAGCAAATATTGAAA
AATCAATTTCAATGTTAATGGGATTTACAACTGAAGATAGAAATATTCAAATGGCAATTC
CAGTTCATATGATTGCAAAGGATATTCATGAACTTAGAACTATATTATTAGAATACATTA
AAGAACAATCTGATAGTTTATCTGAAGAATTTAAAGATCAAATTACAAATGCTATCAATT
GTTCTGCTCATTTTTCAACTCAACAATTATTCTCTGTATCTGCTTTAATTTGTCATAATA
GAATTACTGATATCTCACAATTAGGTTATTCTTCTCGTAATA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---virflfcylfnflnh*wfyr**mmsnknqlkissh*vvqspxnyqy*NYNQLQSYLQ
ELVKIYHQKKNVRLNESASNQLRSSIDYYISNNKSDTTTTTTTTTTTTNSENNNITDLIS
SPKRLPKEDKTLPLLANIEKSISMLMGFTTEDRNIQMAIPVHMIAKDIHELRTILLEYIK
EQSDSLSEEFKDQITNAINCSAHFSTQQLFSVSALICHNRITDISQLGYSSRN
Translated Amino Acid sequence (All Frames) 
Frame A:
---virflfcylfnflnh*wfyr**mmsnknqlkissh*vvqspxnyqy*NYNQLQSYLQ
ELVKIYHQKKNVRLNESASNQLRSSIDYYISNNKSDTTTTTTTTTTTTNSENNNITDLIS
SPKRLPKEDKTLPLLANIEKSISMLMGFTTEDRNIQMAIPVHMIAKDIHELRTILLEYIK
EQSDSLSEEFKDQITNAINCSAHFSTQQLFSVSALICHNRITDISQLGYSSRN


Frame B:
---lsdscfvisstf*iingsigse*cqtkis*kyhlirsfnrrxiinikitinfnltfk
swskfiikrrt*g*mnllqinyvhqliiifqiinliqllllqlqlqlqivriiilqi*fh
hqkdyqkkikhyhy*qilknqfqc*wdlqlkieifkwqfqfi*lqrifmnlelyy*ntlk
nnlivylknlkiklqmlsivllifqlnnyslyll*fviiellishn*villvi


Frame C:
---yqipvllslqlfkslmvlsvvndvkqksaeniislgrsiaxqlsilklqstsilpsr
vgqnlsskeerevk*icfksitfin*llyfk**i*ynyyyynynynyk**e**yyrfnfi
tkkitkrr*nitiisky*kinfnvngiyn*r*kysngnsssydckgys*t*nyiirih*r
ti**fi*ri*rsnykcyqlfcsffnstiilcicfnls**ny*yltirlffs*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN638 (AFN638Q) /CSM/AF/AFN6-B/AFN638Q.Seq.d/                        745   0.0
AFM361 (AFM361Q) /CSM/AF/AFM3-C/AFM361Q.Seq.d/                        745   0.0
AFI842 (AFI842Q) /CSM/AF/AFI8-B/AFI842Q.Seq.d/                        460   e-128
VHM828 (VHM828Q) /CSM/VH/VHM8-B/VHM828Q.Seq.d/                         38   0.18
FC-IC1605 (FC-IC1605Q) /CSM/FC-IC/FC-IC1605Q.Seq.d/                    38   0.18
AFK355 (AFK355Q) /CSM/AF/AFK3-C/AFK355Q.Seq.d/                         38   0.18
VFN111 (VFN111Q) /CSM/VF/VFN1-A/VFN111Q.Seq.d/                         36   0.69
SSG371 (SSG371Q) /CSM/SS/SSG3-C/SSG371Q.Seq.d/                         36   0.69
SFD176 (SFD176Q) /CSM/SF/SFD1-D/SFD176Q.Seq.d/                         36   0.69
AFJ760 (AFJ760Q) /CSM/AF/AFJ7-C/AFJ760Q.Seq.d/                         36   0.69
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...   743   0.0    4
(BJ346939) Dictyostelium discoideum cDNA clone:dda25j15, 3' ...   743   0.0    2
(BJ345660) Dictyostelium discoideum cDNA clone:dda28k10, 3' ...   743   0.0    4
(BJ344056) Dictyostelium discoideum cDNA clone:dda18d12, 3' ...   458   0.0    3
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    40   0.016  13
(AE001409) Plasmodium falciparum 3D7 chromosome 2 section 46...    46   0.020  2
(EJ942572) 1093018895692 Global-Ocean-Sampling_GS-30-02-01-1...    52   0.029  1
(EJ936015) 1093018839305 Global-Ocean-Sampling_GS-30-02-01-1...    52   0.029  1
(AE017263) Mesoplasma florum L1 complete genome.                   42   0.041  15
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    48   0.092  5
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000383_594(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340...    34   3.6
AF030694_13(AF030694|pid:none) Plasmodium falciparum strain Dd2 ...    34   3.6
CP000647_4473(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    34   4.7
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM361 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM361Z
3' end seq. 
>AFM361Z.Seq
XXXXXXXXXXAGTTATCAGATTCCTGTTTTGTTATCTCTTCAACTTTTTAAATCATTAAT
GGTTCTATCGGTAGTGAATGATGTCAAACAAAAATCAGCTGAAAATATCATCTCATTAGG
TCGTTCAATCGCCGANCAATTATCAATATTAAAATTACAATCAACTTCAATCTTACCTTC
AAGAGTTGGTCAAAATTTATCATCAAAAGAAGAACGTGAGGTTAAATGAATCTGCTTCAA
ATCAATTACGTTCATCAATTGATTATTATATTTCAAATAATAAATCTGATACAACTACTA
CTACTACAACTACAACTACAACTACAAATAGTGAGAATAATAATATTACAGATTTAATTT
CATCACCAAAAAGATTACCAAAAGAAGATAAAACATTACCATTATTAGCAAATATTGAAA
AATCAATTTCAATGTTAATGGGATTTACAACTGAAGATAGAAATATTCAAATGGCAATTC
CAGTTCATATGATTGCAAAGGATATTCATGAACTTAGAACTATATTATTAGAATACATTA
AAGAACAATCTGATAGTTTATCTGAAGAATTTAAAGATCAAATTACAAATGCTATCAATT
GTTCTGCTCATTTTTCAACTCAACAATTATTCTCTGTATCTGCTTTAATTTGTCATAATA
GAATTACTGATATCTCACAATTAGGTTATTCTTCTCGTAATA
Length of 3' end seq. 702
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -