VFD812
Library VF
(Link to library)
Clone ID VFD812
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16485-1
Original site URL
Representative seq. ID VFD812P
(Link to Original site)
Representative DNA sequence
>VFD812 (VFD812Q) /CSM/VF/VFD8-A/VFD812Q.Seq.d/
ATTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAAATGAGTGGTG
TTGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTG
GTCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTTACCTATCGTG
TTTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAACGAATCTAATG
GATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAG
GTGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAA
TTGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAA
AAGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTG
ATTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATA
ACCCAAATCATTTAATTAAACCATATGAACTTTAAAAATTCTTAAAACTCATTTCAAATT
TATTATAAATAAATGAAACATATTTTAGTTTTAAATATTAAAAAAAAAAXXXXXXXXXXA
TTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAAATGAGTGGTGT
TGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGG
TCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTTACCTATCGTGT
TTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAACGAATCTAATGG
ATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAGG
TGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAAT
TGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAAA
AGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTGA
TTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATAA
CCCAAATCATTAATTAAACCATANAACTTTAAAAATTCTAAAACTCATT
sequence update 2001. 6. 1
Translated Amino Acid sequence
iikllkylkiikikkek*vvll*l*lktvqlf*vllklvlvlsvafsqtklkifkmlpiv
fmkmnnqkeklelsl*tnlmdgtklldsimvvvdilnvkqvialvllpkvihi*niqfkq
lishgnqvvnntlpynygnqkh*vfgtilkkleslqvtnlimmvkh*sftgvlmvhlisi
tqii*lnhmnfkns*nsfqiyyk*MKHILVLNIKKK---

---IIKLLKYLKIIKIKKEK*vvll*l*lktvqlf*vllklvlvlsvafsqtklkifkml
pivfmkmnnqkeklelsl*tnlmdgtklldsimvvvdilnvkqvialvllpkvihi*niq
fkqlishgnqvvnntlpynygnqkh*vfgtilkkleslqvtnlimmvkh*sftgvlmvhl
isitqiin*tixl*kf*ns


Translated Amino Acid sequence (All Frames)
Frame A:
iikllkylkiikikkek*vvll*l*lktvqlf*vllklvlvlsvafsqtklkifkmlpiv
fmkmnnqkeklelsl*tnlmdgtklldsimvvvdilnvkqvialvllpkvihi*niqfkq
lishgnqvvnntlpynygnqkh*vfgtilkkleslqvtnlimmvkh*sftgvlmvhlisi
tqii*lnhmnfkns*nsfqiyyk*MKHILVLNIKKK---

---IIKLLKYLKIIKIKKEK*vvll*l*lktvqlf*vllklvlvlsvafsqtklkifkml
pivfmkmnnqkeklelsl*tnlmdgtklldsimvvvdilnvkqvialvllpkvihi*niq
fkqlishgnqvvnntlpynygnqkh*vfgtilkkleslqvtnlimmvkh*sftgvlmvhl
isitqiin*tixl*kf*ns

Frame B:
l*ny*ni*k*lk*kkknewcccnfn*krssyfrcs*nwcwsyp*lfprqn*rssrcylsc
l*r*ttkrks*sypckri*wmeqsy*tlsww*wif*m*sr**hwyccqr*stfeifnsnn
*fpmeirwstihcltimetksirylvrs*rn*nhsk*pi*l*w*nislllgy*wftlfp*
pksfn*ti*tlkilkthfkfiink*nif*f*ilkkk---

---l*ny*ni*k*lk*kkknewcccnfn*krssyfrcs*nwcwsyp*lfprqn*rssrcy
lscl*r*ttkrks*sypckri*wmeqsy*tlsww*wif*m*sr**hwyccqr*stfeifn
snn*fpmeirwstihcltimetksirylvrs*rn*nhsk*pi*l*w*nislllgy*wftl
fp*pkslikpxnfknskth

Frame C:
ykiikifknn*nkkrkmsgvvvtliengpailgalktgaglirsffpdktkdlqdvtyrv
yedeqpkgkvrvilvnesngwnkairlyhggsgyseckagdstgtvakgdphlkysiqti
dfpwksggqqyialqlwkpkalgiwydleeiritpsnqsdydgktlvfywgtdgspyfhn
pnhlikpyel*kflklisnll*inetyfsfky*kk---

---ykiikifknn*nkkrkmsgvvvtliengpailgalktgaglirsffpdktkdlqdvt
yrvyedeqpkgkvrvilvnesngwnkairlyhggsgyseckagdstgtvakgdphlkysi
qtidfpwksggqqyialqlwkpkalgiwydleeiritpsnqsdydgktlvfywgtdgspy
fhnpnh*lnhxtlkilkli

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD812 (VFD812Q) /CSM/VF/VFD8-A/VFD812Q.Seq.d/ 1166 0.0
VHH461 (VHH461Q) /CSM/VH/VHH4-C/VHH461Q.Seq.d/ 1160 0.0
VHD389 (VHD389Q) /CSM/VH/VHD3-D/VHD389Q.Seq.d/ 1136 0.0
VFG618 (VFG618Q) /CSM/VF/VFG6-A/VFG618Q.Seq.d/ 1116 0.0
VSB312 (VSB312Q) /CSM/VS/VSB3-A/VSB312Q.Seq.d/ 1104 0.0
VHN796 (VHN796Q) /CSM/VH/VHN7-D/VHN796Q.Seq.d/ 1019 0.0
VFI208 (VFI208Q) /CSM/VF/VFI2-A/VFI208Q.Seq.d/ 1019 0.0
VSC620 (VSC620Q) /CSM/VS/VSC6-A/VSC620Q.Seq.d/ 1013 0.0
VSK302 (VSK302Q) /CSM/VS/VSK3-A/VSK302Q.Seq.d/ 1005 0.0
VSJ206 (VSJ206Q) /CSM/VS/VSJ2-A/VSJ206Q.Seq.d/ 1005 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX569796|BX569796.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-106K21. 46 0.017 8
AL467252|AL467252.1 T. brucei sheared genomic DNA clone 157f12, forward sequence. 36 0.098 2
AL457318|AL457318.1 T. brucei sheared genomic DNA clone 66f02, reverse sequence. 36 0.10 2
AL488330|AL488330.1 T. brucei sheared genomic DNA clone 266g01, forward sequence. 36 0.10 2
AC116219|AC116219.3 Rattus norvegicus clone CH230-251E21, WORKING DRAFT SEQUENCE, 1 ordered piece. 40 0.11 2
AL476405|AL476405.1 T. brucei sheared genomic DNA clone 205f08, reverse sequence. 36 0.11 2
AC125031|AC125031.3 Mus musculus clone RP24-103C19, LOW-PASS SEQUENCE SAMPLING. 38 0.17 3
AC146074|AC146074.1 Pan troglodytes chromosome UNK clone RP43-15D8, *** SEQUENCING IN PROGRESS ***, 39 unordered pieces. 48 0.27 1
AC130798|AC130798.12 Medicago truncatula clone mth2-27f17, complete sequence. 48 0.27 1
AX345169|AX345169.1 Sequence 240 from Patent WO0200928. 36 0.45 4
dna update 2003. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000391_9(CP000391|pid:none) Mesorhizobium sp. BNC1 plasmid 2, ... 34 9.5

protein update 2009. 2.10
PSORT

psg: 0.60 gvh: 0.08 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.31 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: mitochondrial

>> prediction for VFD812 is nuc

5' end seq. ID VFD812F
5' end seq.
>VFD812F.Seq
ATTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAAATGAGTGGTG
TTGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTG
GTCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTTACCTATCGTG
TTTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAACGAATCTAATG
GATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAG
GTGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAA
TTGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAA
AAGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTG
ATTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATA
ACCCAAATCATTTAATTAAACCATATGAACTTTAAAAATTCTTAAAACTCATTTCAAATT
TATTATAAATAAATGAAACATATTTTAGTTTTAAATATTAAAAAAAAAA----------
Length of 5' end seq. 649
3' end seq. ID VFD812Z
3' end seq.
>VFD812Z.Seq
----------ATTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAA
ATGAGTGGTGTTGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAA
ACTGGTGCTGGTCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTT
ACCTATCGTGTTTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAAC
GAATCTAATGGATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAA
TGTAAAGCAGGTGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCA
ATTCAAACAATTGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTA
TGGAAACCAAAAGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGT
AACCAATCTGATTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCT
TATTTCCATAACCCAAATCATTAATTAAACCATANAACTTTAAAAATTCTAAAACTCATT
Length of 3' end seq. 590
Connected seq. ID VFD812P
Connected seq.
>VFD812P.Seq
ATTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAAATGAGTGGTG
TTGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTG
GTCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTTACCTATCGTG
TTTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAACGAATCTAATG
GATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAG
GTGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAA
TTGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAA
AAGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTG
ATTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATA
ACCCAAATCATTTAATTAAACCATATGAACTTTAAAAATTCTTAAAACTCATTTCAAATT
TATTATAAATAAATGAAACATATTTTAGTTTTAAATATTAAAAAAAAAA----------A
TTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAAATGAGTGGTGT
TGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGG
TCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTTACCTATCGTGT
TTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAACGAATCTAATGG
ATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAGG
TGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAAT
TGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAAA
AGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTGA
TTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATAA
CCCAAATCATTAATTAAACCATANAACTTTAAAAATTCTAAAACTCATT
Length of connected seq. 1239
Full length Seq ID -
Full length Seq. -
Length of full length seq. -