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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD796
Library VF
(Link to library)
Clone ID VFD796
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16480-1
Original site URL
Representative seq. ID VFD796E
(Link to Original site)
Representative DNA sequence 
>VFD796 (VFD796Q) /CSM/VF/VFD7-D/VFD796Q.Seq.d/
AAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTA
GTATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAA
TTCAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGA
ACAACATTAAATATTACATTTGATTTTACAACATCATATGCACAAAATACACAATTTGCT
GCACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTT
GATCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATT
GGTAATATTCAAGCAAATGGTGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCA
AATATTAAAGATGATGCCAATTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGT
TATGATTGTTCAGATCCAAGTAAATCAGTAATTGGTGATATGATTAGTTTCTTGTACTAT
TGGTGTTGGTAATATCGATTATTCATCATTTGATAAATCTAAATTAACAGGTGTCAACAC
TGCATCATCCTATTCAAATTTAGAGAATGCAATTGGTTTAGCAGTAGTTTACAATACTAC
CATCACCAAAGGTGATTACATTGAAGGTAGAGTTTTATTCAAAGCACTCAATTNTTCATT
CATTCAAGTATCTGCTAAAGTTTCCGGTTTATCTTATCAAGCTCATGGTTTCCATGTTCA
TCAATTTGGTGATGTTTCATCGGATAATGGTACTTCAATTGGTGGTCATTTCTTAAAGAC
TGGTCAAGAACATTCTCTCCCACCATCTGGAACTAGACATTATGGTGATTTTGGTAATTT
CTGNGCTTTCTCTCAAGATATGATGGATACTGGTTACTATTATTATGAGACTGATCATGT
CACTGCCGCTTTAGTCATTGGTANAGGTATGGCCGTTCATAACTTTACTGATAAAGGTAA
TAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCATTGCTTTAATTCAAGATGCTGA
TTACAGTTTAAATCTTCCAATGGATTGCAAATGGGATGTCATTTGTGCAAATGGTTCATA
CTATGGTGATATGTCAAACAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence 
syslidylsqnkk*dfyly*yf*fqlfplqkpitnmlfvnsmnyqlvvlkvllif*vlme
qh*ilhlilqhhmhkihnllhkf*hmviihhq*pi*evyliqpm*rqqdvqvehhvqvil
vifkqmvvmlkhkqfh*tfqilkmmpiqllvvqlqsmvvvmivqiqvnq*lvi*LVSCTI
GVGNIDYSSFDKSKLTGVNTASSYSNLENAIGLAVVYNTTITKGDYIEGRVLFKALNXSF
IQVSAKVSGLSYQAHGFHVHQFGDVSSDNGTSIGGHFLKTGQEHSLPPSGTRHYGDFGNF
XAFSQDMMDTGYYYYETDHVTAALVIGXGMAVHNFTDKGNSDVGGSRCGQGVIALIQDAD
YSLNLPMDCKWDVICANGSYYGDMSNK
Translated Amino Acid sequence (All Frames) 
Frame A:
klqsd*lfisk*kmrllsvlvflisvisiakadyqyafckfnelsiggvegiahllstdg
ttlnitfdfttsyaqntqfaaqiltygynpssmtnlgsvfdptnvktagcpsgtpragdi
gniqanggnveaqtislnipnikddansiigrsiaiyggsydcsdpsksvigdmisflyy
wcw*yrlfii**i*inrcqhciilfkfrecnwfssslqyyhhqr*lh*r*sfiqstqxfi
hssic*sfrfilssswfpcssiw*cfig*wyfnwwsflkdwsrtfsptiwn*tlw*fw*f
lxflsrydgywllll*d*schcrfshwxrygrs*ly**r***cwwfslwsrchcfnsrc*
lqfkssnglqmgchlckwfilw*yvkq


Frame B:
syslidylsqnkk*dfyly*yf*fqlfplqkpitnmlfvnsmnyqlvvlkvllif*vlme
qh*ilhlilqhhmhkihnllhkf*hmviihhq*pi*evyliqpm*rqqdvqvehhvqvil
vifkqmvvmlkhkqfh*tfqilkmmpiqllvvqlqsmvvvmivqiqvnq*lvi*LVSCTI
GVGNIDYSSFDKSKLTGVNTASSYSNLENAIGLAVVYNTTITKGDYIEGRVLFKALNXSF
IQVSAKVSGLSYQAHGFHVHQFGDVSSDNGTSIGGHFLKTGQEHSLPPSGTRHYGDFGNF
XAFSQDMMDTGYYYYETDHVTAALVIGXGMAVHNFTDKGNSDVGGSRCGQGVIALIQDAD
YSLNLPMDCKWDVICANGSYYGDMSNK


Frame C:
vtv*liiylkiknetficisifdfsyfhcksrlpicfl*iq*iinwwc*rycssfky*wn
nikyyi*fyniictkyticctnfniwl*siindqfrkci*snqckdsrmskwnttcr*yw
*ysskww*c*stnnfikhsky*r*cqfnywsfncnlww*l*lfrsk*isnw*yd*flvll
vlvisiihhlinln*qvstlhhpiqi*rmqlv*q*ftilpspkvitlkvefyskhsixhs
fkyllkfpvyliklmvsmfinlvmfhrimvlqlvvis*rlvknilshhleldimvilvis
xlslki*wilvtiimrlimslpl*slvxvwpfitllikvivmlvvlvvvkvsll*fkmli
tv*ifqwiangmsfvqmvhtmvicqt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD796 (VFD796Q) /CSM/VF/VFD7-D/VFD796Q.Seq.d/                       2286   0.0
VHK773 (VHK773Q) /CSM/VH/VHK7-D/VHK773Q.Seq.d/                       2262   0.0
VFM834 (VFM834Q) /CSM/VF/VFM8-B/VFM834Q.Seq.d/                       2252   0.0
VFL780 (VFL780Q) /CSM/VF/VFL7-D/VFL780Q.Seq.d/                       2252   0.0
VFL248 (VFL248Q) /CSM/VF/VFL2-B/VFL248Q.Seq.d/                       2252   0.0
VFH843 (VFH843Q) /CSM/VF/VFH8-B/VFH843Q.Seq.d/                       2252   0.0
VFI294 (VFI294Q) /CSM/VF/VFI2-D/VFI294Q.Seq.d/                       2248   0.0
VFK262 (VFK262Q) /CSM/VF/VFK2-C/VFK262Q.Seq.d/                       2246   0.0
VFM189 (VFM189Q) /CSM/VF/VFM1-D/VFM189Q.Seq.d/                       2244   0.0
VFL863 (VFL863Q) /CSM/VF/VFL8-C/VFL863Q.Seq.d/                       2244   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM394361|BM394361.1 50072-2-3-D09.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    54  0.004  1
BM392933|BM392933.1 50071-2-3-D09.f.1 Chilcoat/Turkewitz cDNA (small fraction) Tetrahymena thermophila cDNA, mRNA sequence.    54  0.004  1
BU794891|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence.    52  0.016  1
BU724417|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence.    52  0.016  1
BU722666|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence.    52  0.016  1
AC087320|AC087320.16 Homo sapiens 12p BAC RP11-818E15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  0.96  3
BX571969|BX571969.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-93P1.    46  0.98  1
AF046872|AF046872.1 Candida albicans Cu,Zn-superoxide dismutase (sod1) gene, complete cds.    46  0.98  1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38  1.1  9
BE217635|BE217635.1 MD0265 Meloidogyne incognita J2 (#MD99-1) Meloidogyne incognita cDNA clone 2994 5' similar to unknown Meloidogyne incognita cDNA, mRNA sequence.    40  1.4  2
dna update 2003. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RQ1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   421   0.0
(Q54RN1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   157   2e-61
CP000828_5114(CP000828|pid:none) Acaryochloris marina MBIC11017,...    82   5e-14
CP000269_1690(CP000269|pid:none) Janthinobacterium sp. Marseille...    79   2e-13
(Q54G70) RecName: Full=Superoxide dismutase [Cu-Zn] 5;          ...    74   1e-11
CP000884_3926(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    71   6e-11
EU839994_57(EU839994|pid:none) Agrotis ipsilon multiple nucleopo...    71   8e-11
FN315361_1(FN315361|pid:none) Schistosoma japonicum isolate Anhu...    70   2e-10
(P80566) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...    70   2e-10
FN320684_1(FN320684|pid:none) Schistosoma japonicum isolate Anhu...    70   2e-10
protein update 2009. 7.10
PSORT 

 psg: 0.92  gvh: 0.39  alm: 0.40  top: 0.47  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFD796 is cyt
5' end seq. ID VFD796F
5' end seq. 
>VFD796F.Seq
AAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTA
GTATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAA
TTCAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGA
ACAACATTAAATATTACATTTGATTTTACAACATCATATGCACAAAATACACAATTTGCT
GCACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTT
GATCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATT
GGTAATATTCAAGCAAATGGTGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCA
AATATTAAAGATGATGCCAATTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGT
TATGATTGTTCAGATCCAAGTAAATCAGTAATTGGTGATATGATTAGTTTTTGTACTATT
GGTGTTGGTAATATCGATTATTCATCATTTGATAAATCTAAATTAACAGGTGTCAACACT
GCATCATCCTATTCAAATTTAGAGAATGCAATTGGTTTAGCAGTAGTTT----------
Length of 5' end seq. 649
3' end seq. ID VFD796Z
3' end seq. 
>VFD796Z.Seq
----------AATCAGTAATTGGTGATATGATTAGTTTCTTGTACTATTGGTGTTGGTAA
TATCGATTATTCATCATTTGATANATCTAAATTAACAGGTGTCAACACTGCATCATCCTA
TTCAAATTTAGAGAATGCAATTGGTTTAGCAGTAGTTTACAATACTACCATCACCAAAGG
TGATTACATTGAAGGTAGAGTTTTATTCAAAGCACTCAATTNTTCATTCATTCAAGTATC
TGCTAAAGTTTCCGGTTTATCTTATCAAGCTCATGGTTTCCATGTTCATCAATTTGGTGA
TGTTTCATCGGATAATGGTACTTCAATTGGTGGTCATTTCTTAAAGACTGGTCAAGAACA
TTCTCTCCCACCATCTGGAACTAGACATTATGGTGATTTTGGTAATTTCTGNGCTTTCTC
TCAAGATATGATGGATACTGGTTACTATTATTATGAGACTGATCATGTCACTGCCGCTTT
AGTCATTGGTANAGGTATGGCCGTTCATAACTTTACTGATAAAGGTAATAGTGATGTTGG
TGGTTCTCGTTGTGGTCAAGGTGTCATTGCTTTAATTCAAGATGCTGATTACAGTTTAAA
TCTTCCAATGGATTGCAAATGGGATGTCATTTGTGCAAATGGTTCATACTATGGTGATAT
GTCAAACAAA
Length of 3' end seq. 660
Connected seq. ID VFD796P
Connected seq. 
>VFD796P.Seq
AAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTA
GTATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAA
TTCAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGA
ACAACATTAAATATTACATTTGATTTTACAACATCATATGCACAAAATACACAATTTGCT
GCACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTT
GATCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATT
GGTAATATTCAAGCAAATGGTGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCA
AATATTAAAGATGATGCCAATTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGT
TATGATTGTTCAGATCCAAGTAAATCAGTAATTGGTGATATGATTAGTTTTTGTACTATT
GGTGTTGGTAATATCGATTATTCATCATTTGATAAATCTAAATTAACAGGTGTCAACACT
GCATCATCCTATTCAAATTTAGAGAATGCAATTGGTTTAGCAGTAGTTT----------A
ATCAGTAATTGGTGATATGATTAGTTTCTTGTACTATTGGTGTTGGTAATATCGATTATT
CATCATTTGATANATCTAAATTAACAGGTGTCAACACTGCATCATCCTATTCAAATTTAG
AGAATGCAATTGGTTTAGCAGTAGTTTACAATACTACCATCACCAAAGGTGATTACATTG
AAGGTAGAGTTTTATTCAAAGCACTCAATTNTTCATTCATTCAAGTATCTGCTAAAGTTT
CCGGTTTATCTTATCAAGCTCATGGTTTCCATGTTCATCAATTTGGTGATGTTTCATCGG
ATAATGGTACTTCAATTGGTGGTCATTTCTTAAAGACTGGTCAAGAACATTCTCTCCCAC
CATCTGGAACTAGACATTATGGTGATTTTGGTAATTTCTGNGCTTTCTCTCAAGATATGA
TGGATACTGGTTACTATTATTATGAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTA
NAGGTATGGCCGTTCATAACTTTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTT
GTGGTCAAGGTGTCATTGCTTTAATTCAAGATGCTGATTACAGTTTAAATCTTCCAATGG
ATTGCAAATGGGATGTCATTTGTGCAAATGGTTCATACTATGGTGATATGTCAAACAAA
Length of connected seq. 1309
Full length Seq ID VFD796E
Full length Seq. 
>VFD796E.Seq
AAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTA
GTATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAA
TTCAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGA
ACAACATTAAATATTACATTTGATTTTACAACATCATATGCACAAAATACACAATTTGCT
GCACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTT
GATCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATT
GGTAATATTCAAGCAAATGGTGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCA
AATATTAAAGATGATGCCAATTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGT
TATGATTGTTCAGATCCAAGTAAATCAGTAATTGGTGATATGATTAGTTTCTTGTACTAT
TGGTGTTGGTAATATCGATTATTCATCATTTGATAAATCTAAATTAACAGGTGTCAACAC
TGCATCATCCTATTCAAATTTAGAGAATGCAATTGGTTTAGCAGTAGTTTACAATACTAC
CATCACCAAAGGTGATTACATTGAAGGTAGAGTTTTATTCAAAGCACTCAATTNTTCATT
CATTCAAGTATCTGCTAAAGTTTCCGGTTTATCTTATCAAGCTCATGGTTTCCATGTTCA
TCAATTTGGTGATGTTTCATCGGATAATGGTACTTCAATTGGTGGTCATTTCTTAAAGAC
TGGTCAAGAACATTCTCTCCCACCATCTGGAACTAGACATTATGGTGATTTTGGTAATTT
CTGNGCTTTCTCTCAAGATATGATGGATACTGGTTACTATTATTATGAGACTGATCATGT
CACTGCCGCTTTAGTCATTGGTANAGGTATGGCCGTTCATAACTTTACTGATAAAGGTAA
TAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCATTGCTTTAATTCAAGATGCTGA
TTACAGTTTAAATCTTCCAATGGATTGCAAATGGGATGTCATTTGTGCAAATGGTTCATA
CTATGGTGATATGTCAAACAAA
Length of full length seq. 1162