NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM360
Library AF
(Link to library)
Clone ID AFM360
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM360 (AFM360Q) /CSM/AF/AFM3-C/AFM360Q.Seq.d/
ATCTATAGCTTTATATTAAAAAGATAATTTAAAAATGTTTAAAAGTATTATGTATGCTTT
GGCAGTTGCCCCAGCAGTAACATCAAGTTCAGATAAATTACCAAATGGTGTAGTTTCAGC
ATCACAACTTGGAAGTGAAAAAGAAAAAAGAAAATTAAAAAATGTTACAAAGATTGTTAT
TGTTGGTGGTGGTGCAGGTGGTCTTTCAGTGGCCTCTCAATTAGAACATAAATTCAAAAA
CAAAGGTGATATCGTTATCGTTGAACCAAGTGAAAAACATTACTATCAACCATTATGGAC
TTTAGTTGGTGGTGGTATCTTTTCAAGAAAAGACTCTGAAAAAGATGAAAAAGATTTCAT
TCCAAAAGGTGCAACTTGGGTTAAAGATTCTGTAACTGTTTTTAAACCAGAAGAAAATAT
TGTTTTAACAAAAGATGGTAAAGAAATTGATTATGATTATTTAGTTGTATCAACTGGTTT
AGAATTATATTGGGATAGAGTTAAAGGATTAAAAGAGAATTTAGGAAAGAATGGTGTAAC
ATCAAATTATTCATATGATTTCATGTGAAAAGACATTTGAATTTATTAAATCATTGAAAC
CAGGGTAATGTTGCAATCTTXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence 
sialy*KDNLKMFKSIMYALAVAPAVTSSSDKLPNGVVSASQLGSEKEKRKLKNVTKIVI
VGGGAGGLSVASQLEHKFKNKGDIVIVEPSEKHYYQPLWTLVGGGIFSRKDSEKDEKDFI
PKGATWVKDSVTVFKPEENIVLTKDGKEIDYDYLVVSTGLELYWDRVKGLKENLGKNGVT
SNYSYDFM*kdi*iy*iietrvmlqs---
Translated Amino Acid sequence (All Frames) 
Frame A:
iysfilkr*fknv*kyyvcfgscpssnikfr*itkwcsfsittwk*krkkkikkcykdcy
cwwwcrwsfsglsirt*iqkqr*yryr*tk*ktllstimdfswwwylfkkrl*kr*krfh
skrcnlg*rfcncf*trrkycfnkrw*rn*l*lfscinwfriilg*s*rikrefrkewcn
iklfi*fhvkrhlnllnh*nqgnvai---


Frame B:
sialy*KDNLKMFKSIMYALAVAPAVTSSSDKLPNGVVSASQLGSEKEKRKLKNVTKIVI
VGGGAGGLSVASQLEHKFKNKGDIVIVEPSEKHYYQPLWTLVGGGIFSRKDSEKDEKDFI
PKGATWVKDSVTVFKPEENIVLTKDGKEIDYDYLVVSTGLELYWDRVKGLKENLGKNGVT
SNYSYDFM*kdi*iy*iietrvmlqs---


Frame C:
l*lyikkii*kclkvlcmlwqlpqq*hqvqinyqmv*fqhhnlevkkkken*kmlqrlll
lvvvqvvfqwpln*ninsktkvislslnqvknitinhygl*lvvvsfqektlkkmkkisf
qkvqlglkil*lflnqkkilf*qkmvkklimii*lyqlv*nyigielkd*kri*ermv*h
qiihmiscektfefikslkpg*ccn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM360 (AFM360Q) /CSM/AF/AFM3-C/AFM360Q.Seq.d/                        908   0.0
VSG837 (VSG837Q) /CSM/VS/VSG8-B/VSG837Q.Seq.d/                        876   0.0
AFK189 (AFK189Q) /CSM/AF/AFK1-D/AFK189Q.Seq.d/                        868   0.0
AFO291 (AFO291Q) /CSM/AF/AFO2-D/AFO291Q.Seq.d/                        862   0.0
CFJ183 (CFJ183Q) /CSM/CF/CFJ1-D/CFJ183Q.Seq.d/                        858   0.0
CFK475 (CFK475Q) /CSM/CF/CFK4-D/CFK475Q.Seq.d/                        799   0.0
VFJ594 (VFJ594Q) /CSM/VF/VFJ5-D/VFJ594Q.Seq.d/                        793   0.0
SLI747 (SLI747Q) /CSM/SL/SLI7-B/SLI747Q.Seq.d/                        234   1e-60
AFL426 (AFL426Q) /CSM/AF/AFL4-B/AFL426Q.Seq.d/                        228   8e-59
VHP307 (VHP307Q) /CSM/VH/VHP3-A/VHP307Q.Seq.d/                         42   0.010
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329591) Dictyostelium discoideum cDNA clone:dda25h15, 5' ...   908   0.0    2
(BJ362025) Dictyostelium discoideum cDNA clone:ddc19e21, 5' ...   789   0.0    3
(BJ327778) Dictyostelium discoideum cDNA clone:dda21a23, 5' ...   781   0.0    4
(BJ362447) Dictyostelium discoideum cDNA clone:ddc21f20, 5' ...   781   0.0    3
(BJ414934) Dictyostelium discoideum cDNA clone:ddv20k23, 5' ...   789   0.0    2
(BJ328857) Dictyostelium discoideum cDNA clone:dda29e24, 5' ...   422   0.0    5
(AU266853) Dictyostelium discoideum vegetative cDNA clone:VS...   789   0.0    3
(BJ328193) Dictyostelium discoideum cDNA clone:dda23d08, 5' ...   230   2e-81  2
(AU062256) Dictyostelium discoideum slug cDNA, clone SLI747.      236   9e-71  2
(EX482094) EST_lsal_evj_792047 lsalevj mixed_tissue_mixed_st...    60   1e-04  1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DK1) RecName: Full=Sulfide:quinone oxidoreductase, mitochond...   320   2e-90
CP000909_3813(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...   138   1e-31
CP001337_45(CP001337|pid:none) Chloroflexus aggregans DSM 9485, ...   137   2e-31
AE017333_2666(AE017333|pid:none) Bacillus licheniformis DSM 13, ...   134   3e-30
AP009351_29(AP009351|pid:none) Staphylococcus aureus subsp. aure...   132   6e-30
CP000804_3543(CP000804|pid:none) Roseiflexus castenholzii DSM 13...   132   8e-30
CP000485_2159(CP000485|pid:none) Bacillus thuringiensis str. Al ...   130   2e-29
BA000022_1018(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,...   130   2e-29
CP001176_3373(CP001176|pid:none) Bacillus cereus B4264, complete...   129   5e-29
CP000485_2760(CP000485|pid:none) Bacillus thuringiensis str. Al ...   129   5e-29
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM360 is

5' end seq. ID AFM360F
5' end seq. 
>AFM360F.Seq
ATCTATAGCTTTATATTAAAAAGATAATTTAAAAATGTTTAAAAGTATTATGTATGCTTT
GGCAGTTGCCCCAGCAGTAACATCAAGTTCAGATAAATTACCAAATGGTGTAGTTTCAGC
ATCACAACTTGGAAGTGAAAAAGAAAAAAGAAAATTAAAAAATGTTACAAAGATTGTTAT
TGTTGGTGGTGGTGCAGGTGGTCTTTCAGTGGCCTCTCAATTAGAACATAAATTCAAAAA
CAAAGGTGATATCGTTATCGTTGAACCAAGTGAAAAACATTACTATCAACCATTATGGAC
TTTAGTTGGTGGTGGTATCTTTTCAAGAAAAGACTCTGAAAAAGATGAAAAAGATTTCAT
TCCAAAAGGTGCAACTTGGGTTAAAGATTCTGTAACTGTTTTTAAACCAGAAGAAAATAT
TGTTTTAACAAAAGATGGTAAAGAAATTGATTATGATTATTTAGTTGTATCAACTGGTTT
AGAATTATATTGGGATAGAGTTAAAGGATTAAAAGAGAATTTAGGAAAGAATGGTGTAAC
ATCAAATTATTCATATGATTTCATGTGAAAAGACATTTGAATTTATTAAATCATTGAAAC
CAGGGTAATGTTGCAATCTTXXXXXXXXXX
Length of 5' end seq. 630
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -