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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM359
Library AF
(Link to library)
Clone ID AFM359
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM359 (AFM359Q) /CSM/AF/AFM3-C/AFM359Q.Seq.d/
XXXXXXXXXXGATCCAGACGTTGAAAGAGATTTACTTGATATTTTAATTAAAGAATATGG
TACTGATAATGATGATAAAATTTTATCAATTTTGGCAACAATTAATGATTTTTTCTTAGC
AGGTGTTGATACAAGTTCAACTGCTTTAGAATCAATGGTATTGATGTTAACAAATTATCC
AGAAATTCAAGAAAAAGCATTTGATGAAATAAAGACAGTTGTAAATGGTAGAAGTAAAGT
TAATTTATCAGATAGACAATCAACACCTTATTTAGTTGCTGTAATAAAAGAAACATTAAG
ATATAAACCAATGTCACCATTTGGTTTACCAAGATCTTCACCAAAGGATTGTATGATTGG
TGGTCATTTCATTCCAAAGAATGCACAAATTTTAATTAATTATCAAGCACTTGGAATGAA
TGAAGAATATTATGAAAATCCAGAACAATTTGATCCATCAAGATTTTTAAAAGTTGAATC
AAATGTTGCATTTTTACCATTTAGTATTGGTATTAGAAGTTGTGTGGGTCAAAGTTTTGC
TCAAGATGAGCTATACATTTGTATTTCAAATATTCTTTTAAATTTTAAATTAAAATCAAT
TGACGGTAAAAAGATTGATGAAACTGAGGAATATGGCCTCACACTAAAAACTAAAAATAG
ATTCAATGTAACTCTNAAAAAAGAATTATCTATTTTTATATTATTTAAATA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---PDVERDLLDILIKEYGTDNDDKILSILATINDFFLAGVDTSSTALESMVLMLTNYPE
IQEKAFDEIKTVVNGRSKVNLSDRQSTPYLVAVIKETLRYKPMSPFGLPRSSPKDCMIGG
HFIPKNAQILINYQALGMNEEYYENPEQFDPSRFLKVESNVAFLPFSIGIRSCVGQSFAQ
DELYICISNILLNFKLKSIDGKKIDETEEYGLTLKTKNRFNVTLKKELSIFILFK
Translated Amino Acid sequence (All Frames) 
Frame A:
---iqtlkeiylif*lknmvlimmikfyqfwqqlmifs*qvliqvqll*nqwy*c*qiiq
kfkkkhlmk*rql*mvevkliyqidnqhli*ll**kkh*dinqchhlvyqdlhqriv*lv
visfqrmhkf*liikhle*mknimkiqnnlihqdf*klnqmlhfyhlvlvlevvwvkvll
kmsytfvfqiff*iln*nqltvkrlmklrnmash*klkidsm*lxkknylflyyln


Frame B:
---srr*krft*yfn*riwy*****nfinfgnn**fflsrc*ykfncfringidvnklsr
nsrksi**nkdsckw*k*s*fir*tintlfsccnkrniki*tnvtiwftkiftkglydww
sfhskectnfn*lsstwne*ril*ksrti*sikifks*ikccifti*ywy*klcgskfcs
r*aihlyfkysfkf*ikin*r*kd**n*giwphtkn*k*iqcnsxkriiyfyii*i


Frame C:
---PDVERDLLDILIKEYGTDNDDKILSILATINDFFLAGVDTSSTALESMVLMLTNYPE
IQEKAFDEIKTVVNGRSKVNLSDRQSTPYLVAVIKETLRYKPMSPFGLPRSSPKDCMIGG
HFIPKNAQILINYQALGMNEEYYENPEQFDPSRFLKVESNVAFLPFSIGIRSCVGQSFAQ
DELYICISNILLNFKLKSIDGKKIDETEEYGLTLKTKNRFNVTLKKELSIFILFK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM359 (AFM359Q) /CSM/AF/AFM3-C/AFM359Q.Seq.d/                       1384   0.0
AFI282 (AFI282Q) /CSM/AF/AFI2-D/AFI282Q.Seq.d/                       1368   0.0
AFN106 (AFN106Q) /CSM/AF/AFN1-A/AFN106Q.Seq.d/                       1342   0.0
AFM654 (AFM654Q) /CSM/AF/AFM6-C/AFM654Q.Seq.d/                       1338   0.0
AFM719 (AFM719Q) /CSM/AF/AFM7-A/AFM719Q.Seq.d/                       1332   0.0
SSA192 (SSA192Q) /CSM/SS/SSA1-D/SSA192Q.Seq.d/                       1326   0.0
AFN541 (AFN541Q) /CSM/AF/AFN5-B/AFN541Q.Seq.d/                       1324   0.0
AFI735 (AFI735Q) /CSM/AF/AFI7-B/AFI735Q.Seq.d/                       1318   0.0
AFI677 (AFI677Q) /CSM/AF/AFI6-D/AFI677Q.Seq.d/                       1314   0.0
AFH768 (AFH768Q) /CSM/AF/AFH7-C/AFH768Q.Seq.d/                       1314   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346925) Dictyostelium discoideum cDNA clone:dda25f15, 3' ...  1382   0.0    1
(BJ343968) Dictyostelium discoideum cDNA clone:dda17c22, 3' ...  1366   0.0    1
(BJ347447) Dictyostelium discoideum cDNA clone:dda27k01, 3' ...  1334   0.0    1
(BJ347085) Dictyostelium discoideum cDNA clone:dda26f05, 3' ...  1322   0.0    1
(BJ344063) Dictyostelium discoideum cDNA clone:dda18f09, 3' ...  1316   0.0    1
(BJ345611) Dictyostelium discoideum cDNA clone:dda28a11, 3' ...  1314   0.0    1
(BJ344236) Dictyostelium discoideum cDNA clone:dda18i20, 3' ...  1314   0.0    1
(BJ343602) Dictyostelium discoideum cDNA clone:dda16h17, 3' ...  1312   0.0    1
(BJ406422) Dictyostelium discoideum cDNA clone:dds35o05, 3' ...  1302   0.0    1
(BJ401789) Dictyostelium discoideum cDNA clone:dds19l08, 3' ...  1298   0.0    1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556M5) RecName: Full=Probable cytochrome P450 508A1;          ...   442   e-123
(Q1ZXF5) RecName: Full=Probable cytochrome P450 508A4;          ...   265   7e-70
(Q54CS3) RecName: Full=Probable cytochrome P450 508C1;          ...   196   6e-49
(Q1ZXA4) RecName: Full=Probable cytochrome P450 508D1;          ...   196   7e-49
(Q54QD0) RecName: Full=Probable cytochrome P450 517A4;          ...   165   1e-39
(Q54ZM4) RecName: Full=Probable cytochrome P450 518A1;          ...   148   1e-34
(Q1ZXL2) RecName: Full=Probable cytochrome P450 518B1;          ...   148   2e-34
AY533546_1(AY533546|pid:none) Chelydra serpentina cytochrome P45...   144   3e-33
(Q54LT7) RecName: Full=Probable cytochrome P450 519E1;          ...   143   6e-33
(Q54NY3) RecName: Full=Probable cytochrome P450 554A1;          ...   139   1e-31
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM359 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM359Z
3' end seq. 
>AFM359Z.Seq
XXXXXXXXXXGATCCAGACGTTGAAAGAGATTTACTTGATATTTTAATTAAAGAATATGG
TACTGATAATGATGATAAAATTTTATCAATTTTGGCAACAATTAATGATTTTTTCTTAGC
AGGTGTTGATACAAGTTCAACTGCTTTAGAATCAATGGTATTGATGTTAACAAATTATCC
AGAAATTCAAGAAAAAGCATTTGATGAAATAAAGACAGTTGTAAATGGTAGAAGTAAAGT
TAATTTATCAGATAGACAATCAACACCTTATTTAGTTGCTGTAATAAAAGAAACATTAAG
ATATAAACCAATGTCACCATTTGGTTTACCAAGATCTTCACCAAAGGATTGTATGATTGG
TGGTCATTTCATTCCAAAGAATGCACAAATTTTAATTAATTATCAAGCACTTGGAATGAA
TGAAGAATATTATGAAAATCCAGAACAATTTGATCCATCAAGATTTTTAAAAGTTGAATC
AAATGTTGCATTTTTACCATTTAGTATTGGTATTAGAAGTTGTGTGGGTCAAAGTTTTGC
TCAAGATGAGCTATACATTTGTATTTCAAATATTCTTTTAAATTTTAAATTAAAATCAAT
TGACGGTAAAAAGATTGATGAAACTGAGGAATATGGCCTCACACTAAAAACTAAAAATAG
ATTCAATGTAACTCTNAAAAAAGAATTATCTATTTTTATATTATTTAAATA
Length of 3' end seq. 711
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -