VFD775
Library VF
(Link to library)
Clone ID VFD775
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16279-1
Original site URL
Representative seq. ID VFD775Z
(Link to Original site)
Representative DNA sequence
>VFD775 (VFD775Q) /CSM/VF/VFD7-D/VFD775Q.Seq.d/
XXXXXXXXXXATAGAGGTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAA
CCAGTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGT
AAACTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTACTTCTGANATTTTAGGTTCA
TTAACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGT
TTCGATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAATAT
GCTTTATTATCTGATTTTAAAAATGCTATTAAAATTTTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---RGPYSKYDVPASEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSXILGSL
TPVATCGTLPLVRDLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKIL


Translated Amino Acid sequence (All Frames)
Frame A:
---*rsiq*i*ctsl*rc*tsqrfsly*mvr*siswcrl*trl*wlqstw*syf*xfrfi
nsscnlwyssfgs*spr*wfrysnywfw*rrnlsc***icfii*f*kcy*nf


Frame B:
---RGPYSKYDVPASEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSXILGSL
TPVATCGTLPLVRDLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKIL


Frame C:
---evhtvnmmyqplkvlnqskvqsllng*vkhqlvslvnstlmvtkhlvklllxf*vh*
lqlqlvvlflwfviskivvsifkllvlvkkklimlimnmlyylilkmllkfy


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ843 (VSJ843Q) /CSM/VS/VSJ8-B/VSJ843Q.Seq.d/ 648 0.0
VSD888 (VSD888Q) /CSM/VS/VSD8-D/VSD888Q.Seq.d/ 648 0.0
VHJ351 (VHJ351Q) /CSM/VH/VHJ3-C/VHJ351Q.Seq.d/ 648 0.0
VHC429 (VHC429Q) /CSM/VH/VHC4-B/VHC429Q.Seq.d/ 648 0.0
VFO803 (VFO803Q) /CSM/VF/VFO8-A/VFO803Q.Seq.d/ 648 0.0
VFN568 (VFN568Q) /CSM/VF/VFN5-C/VFN568Q.Seq.d/ 648 0.0
VFN531 (VFN531Q) /CSM/VF/VFN5-B/VFN531Q.Seq.d/ 648 0.0
VFN352 (VFN352Q) /CSM/VF/VFN3-C/VFN352Q.Seq.d/ 648 0.0
VFN284 (VFN284Q) /CSM/VF/VFN2-D/VFN284Q.Seq.d/ 648 0.0
VFN175 (VFN175Q) /CSM/VF/VFN1-D/VFN175Q.Seq.d/ 648 0.0

own update 2002.12.16
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U23957|U23957.1 Dictyostelium discoideum P52D mRNA, complete cds. 632 e-178 1
BZ781142|BZ781142.1 ii24e02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone ii24e02, DNA sequence. 48 0.069 1
BX322607|BX322607.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 46 0.27 1
AL717293|AL717293.1 Danio rerio embryonic inner ear subtracted cDNA library 5PRIM end of clone BN0AA024ZG01 of Danio rerio. 46 0.27 1
BX322588|BX322588.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 46 0.43 2
AC145418|AC145418.3 Dasypus novemcinctus clone VMRC5-458M22, WORKING DRAFT SEQUENCE, 2 ordered pieces. 46 1.0 2
AC135027|AC135027.2 Rattus norvegicus clone CH230-352A24, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 44 1.1 1
CC207974|CC207974.1 CH261-35I22_Sp6.1 CH261 Gallus gallus genomic clone CH261-35I22, DNA sequence. 44 1.1 1
AC008615|AC008615.8 Homo sapiens chromosome 5 clone CTB-144A14, complete sequence. 44 1.1 1
BZ098347|BZ098347.1 CH230-236G4.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-236G4, DNA sequence. 34 1.8 2
dna update 2003. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54638) RecName: Full=Acetylornithine deacetylase; EC=... 219 3e-56
U23957_1(U23957|pid:none) Dictyostelium discoideum P52D mRNA, co... 216 2e-55
AB036420_1(AB036420|pid:none) Citrullus lanatus mRNA for DIP-1, ... 108 8e-23
AF360346_1(AF360346|pid:none) Arabidopsis thaliana putative N-ac... 104 8e-22
AL021889_1(AL021889|pid:none) Arabidopsis thaliana DNA chromosom... 104 8e-22
FJ899849_1(FJ899849|pid:none) Populus maximowiczii x Populus nig... 103 2e-21
FJ899850_1(FJ899850|pid:none) Populus maximowiczii x Populus nig... 102 5e-21
CP001325_366(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 101 9e-21
AF170086_1(AF170086|pid:none) Cucurbita pepo silverleaf whitefly... 99 6e-20
AK101568_1(AK101568|pid:none) Oryza sativa Japonica Group cDNA c... 97 2e-19
protein update 2009. 6.18
PSORT

psg: 0.67 gvh: 0.50 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: peroxisomal

>> prediction for VFD775 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFD775Z
3' end seq.
>VFD775Z.Seq
----------ATAGAGGTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAA
CCAGTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGT
AAACTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTACTTCTGANATTTTAGGTTCA
TTAACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGT
TTCGATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAATAT
GCTTTATTATCTGATTTTAAAAATGCTATTAAAATTTTAT
Length of 3' end seq. 330
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -