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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM354
Library AF
(Link to library)
Clone ID AFM354
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM354 (AFM354Q) /CSM/AF/AFM3-C/AFM354Q.Seq.d/
XXXXXXXXXXAGGTNNANTANNGNCAGGNNNNNCAGGCAAGAATTGGNNNGTGGTNTATN
NCNNCANGGTNNAAAGNANATNGTNAGATNNCAATNNNATTTNAATGTTGGTANAGNTTN
TGCAANCTTNNAATGGNNTGGTGGTTCTTTGNNCNNNTATNATATNTTTNATCCATCNAT
TTNTTCAAGTANAATCAGTANAGNTGNNNNNNNNNNNT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---GXXXXGXXGKNWXVVYXXXVXXXXXDXNXIXMLVXXXQXXNGXVVLXXXXIXXIHXF
XQVXSVXXXXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
---GXXXXGXXGKNWXVVYXXXVXXXXXDXNXIXMLVXXXQXXNGXVVLXXXXIXXIHXF
XQVXSVXXXXXX


Frame B:
---vxxxqxxqarigxwxxxxxxkxxxxxxxxfxcwxxxcxlxmxwwffxxxxyxxsixx
fkxnqxxxxxx


Frame C:
---xxxxrxxrqelxxgxxxxgxkxxvrxqxxxnvgxxxaxxxwxggslxxyxxfxpsix
ssxisxxxxxx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM354 (AFM354Q) /CSM/AF/AFM3-C/AFM354Q.Seq.d/                         94   1e-18
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346948) Dictyostelium discoideum cDNA clone:dda25l13, 3' ...    84   2e-12  1
dna update 2009. 4.10
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 91,445,195
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM354 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM354Z
3' end seq. 
>AFM354Z.Seq
XXXXXXXXXXAGGTNNANTANNGNCAGGNNNNNCAGGCAAGAATTGGNNNGTGGTNTATN
NCNNCANGGTNNAAAGNANATNGTNAGATNNCAATNNNATTTNAATGTTGGTANAGNTTN
TGCAANCTTNNAATGGNNTGGTGGTTCTTTGNNCNNNTATNATATNTTTNATCCATCNAT
TTNTTCAAGTANAATCAGTANAGNTGNNNNNNNNNNNT
Length of 3' end seq. 218
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -