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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD705
Library VF
(Link to library)
Clone ID VFD705
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01356-1
Original site URL
Representative seq. ID VFD705P
(Link to Original site)
Representative DNA sequence 
>VFD705 (VFD705Q) /CSM/VF/VFD7-A/VFD705Q.Seq.d/
AAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTATAAC
TAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATTATTC
AAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTCAAAA
TGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATTTAAG
AATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAGGAGT
AATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAAAATT
ATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTAGAAA
AGATGTTGAACCATTAATTGAAGAAGTTGGTAAAATTAAAGGATTACAAAAGATTGGAAT
AACAACAAATGGAATATTATTAAGTAGAAAATTAGATAGATTACATAAAGCTGGTGTGAX
XXXXXXXXXGTTTAGATACATTAAATTCTGATAAATTCACATTAATACAAGAAGATTAGG
TTGGGATAGAGTTTTTCAATCAATTGATAATGCATTAAAATTAGATAATATAAAAGTTAA
AGTTAATTGTGTAATAATGAAAGGTTTAAATGATATGGAGATTTGCGATTTTGTTGAAAT
GACAAGAGATAAATCAGTAGAAATTAGGTTTATTGAATATATGCCATTTGATGGTAACCT
TTGGAGTGATAAAAAGTTTTTATCATATACTGATATGATTAAAATTATACATGAAAAGTA
TCCAACATTTAAAAAGTATACAATTGAAGAAGAGGAACCAAATAATACATCGAAAACATA
TCATGTACCAGGTTTTAAAGGTAAAGTTGGTTTCATACATCAATGAGTGACCATTTTTGT
TCATCTTGTAATAGATTAAGAATTACTGCAGATGGAAACCTAAAGGTTTGTCTCTTTGGT
AATACTGAGGTAAATCTTAGAGATAGAATTAGAGATGGTGCATCCGATCAACAATTATTA
GAAATAATAAATGCCGCTGTTTTAAAGAAAAAAGCTTCTCATGCAGGTATGTAGAGATGC
TCAAAATAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
k****KNTYAMTNIIKSFITRNTYLNKLSPSPYQFNKYYSNSISTPPTHSYEKKQQPIQN
VDDKKYILTDRFNRHHTYLRISLTERCNLRCKYCMPEEGVMLSQADKILTTDEIIRLSKL
FVSAGVNKIRFTGGEPLVRKDVEPLIEEVGKIKGLQKIGITTNGILLSRKLDRLHKAGV-
--

---LDTLNSDKFTLIQED*vgieffnqlimh*n*ii*klkliv***kv*miwrfaillk*
qeinq*klgllnichlmvtfgviksfyhili*lklymksiqhlksiqlkkrnqiihrkhi
myqvlkvklvsyine*pflfil**iknycrwkpkglslw*y*gks*r*n*rwcirstiir
nnkcrcfkeksfscryvemlkik
Translated Amino Acid sequence (All Frames) 
Frame A:
kiiiikkhicndkynkifyn*kyifk*iititipi**ilfkfninttntfi*kktttnsk
c***kiyfnr*i**tsylfkniinrkmqftl*ilya*rrsnvits**nfnh**ny*iiki
irisrck*n*ihww*tis*krc*tin*rsw*n*ritkdwnnnkwniik*kir*it*swc-
--

---v*ih*ilinsh*ykkirlg*sfsin**cikir*yks*s*lcnnerfk*ygdlrfc*n
dkr*isrn*vy*iyai*w*ple**kvfiiy*yd*nyt*kvsni*kvyn*rrgtk*yieni
sctrf*r*swfhtsmsdhfcsscnrlritadgnlkvclfgntevnlrdrirdgasdqqll
eiinaavlkkkashagm*rcsk*k

Frame B:
k****KNTYAMTNIIKSFITRNTYLNKLSPSPYQFNKYYSNSISTPPTHSYEKKQQPIQN
VDDKKYILTDRFNRHHTYLRISLTERCNLRCKYCMPEEGVMLSQADKILTTDEIIRLSKL
FVSAGVNKIRFTGGEPLVRKDVEPLIEEVGKIKGLQKIGITTNGILLSRKLDRLHKAGV-
--

---fryikf**ihintrrlgwdrvfqsidnalkldnikvkvncvimkglndmeicdfvem
trdksveirfieympfdgnlwsdkkflsytdmikiihekyptfkkytieeeepnntskty
hvpgfkgkvgfihq*vtifvhlvid*ellqmet*rfvslvilr*ileielemvhpinny*
k**mplf*rkkllmqvcrdaqnk

Frame C:
nnnnkkthmq*qi**nll*leihi*inyhhhhtnliniiqiqyqhhqhihmkknnnqfkm
lmiknif*qidlidiili*eyh*qkdaiyvvnivclkke*cyhklikf*plmklldyqny
syqqv*ikldslvvnh*lekmlnh*lkklvklkdykrle*qqmeyy*ven*idyiklv*-
--

---LDTLNSDKFTLIQED*vgieffnqlimh*n*ii*klkliv***kv*miwrfaillk*
qeinq*klgllnichlmvtfgviksfyhili*lklymksiqhlksiqlkkrnqiihrkhi
myqvlkvklvsyine*pflfil**iknycrwkpkglslw*y*gks*r*n*rwcirstiir
nnkcrcfkeksfscryvemlkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD705 (VFD705Q) /CSM/VF/VFD7-A/VFD705Q.Seq.d/                       2079   0.0
VFD505 (VFD505Q) /CSM/VF/VFD5-A/VFD505Q.Seq.d/                        993   0.0
SLH306 (SLH306Q) /CSM/SL/SLH3-A/SLH306Q.Seq.d/                        971   0.0
VHO771 (VHO771Q) /CSM/VH/VHO7-C/VHO771Q.Seq.d/                         42   0.019
SSE294 (SSE294Q) /CSM/SS/SSE2-D/SSE294Q.Seq.d/                         42   0.019
VHK249 (VHK249Q) /CSM/VH/VHK2-C/VHK249Q.Seq.d/                         40   0.074
FC-BN06 (FC-BN06Q) /CSM/FC/FC-BN/FC-BN06Q.Seq.d/                       40   0.074
SSM387 (SSM387Q) /CSM/SS/SSM3-D/SSM387Q.Seq.d/                         38   0.29
SSG120 (SSG120Q) /CSM/SS/SSG1-A/SSG120Q.Seq.d/                         38   0.29
SFK836 (SFK836Q) /CSM/SF/SFK8-B/SFK836Q.Seq.d/                         38   0.29
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM774794|BM774794.1 ra97g03.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence.    72  2e-20  3
BI747135|BI747135.1 rm36d04.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to SW:YL71_CAEEL Q20624 HYPOTHETICAL 64.9 KD PROTEIN F49E2.1 IN CHROMOSOME X. [1] ;, mRNA sequence.    72  2e-20  3
BM773715|BM773715.1 ra85b05.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence.    72  4e-18  3
BM881619|BM881619.1 rb12a07.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:O75710 O75710 MOCS1A PROTEIN. ;, mRNA sequence.    72  4e-18  2
BM881752|BM881752.1 rb13f01.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence.    72  4e-18  2
BM882143|BM882143.1 rb26c12.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:O75710 O75710 MOCS1A PROTEIN. ;, mRNA sequence.    72  7e-17  2
BM881593|BM881593.1 rb11g01.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence.    58  2e-16  3
BM882426|BM882426.1 rb01e10.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence.    56  9e-16  3
BU094837|BU094837.1 rf54g10.y2 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:O14940 O14940 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A. ;, mRNA sequence.    56  8e-10  2
BM881100|BM881100.1 rb06a04.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence.    48  4e-06  3
dna update 2003. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NM6) RecName: Full=Molybdenum cofactor biosynthesis protein ...   572   0.0
AE014296_2010(AE014296|pid:none) Drosophila melanogaster chromos...   262   4e-90
AF214021_1(AF214021|pid:none) Drosophila melanogaster molybdenum...   262   4e-90
AC006533_2(AC006533|pid:none) Arabidopsis thaliana chromosome 2 ...   258   1e-89
AY087242_1(AY087242|pid:none) Arabidopsis thaliana clone 33192 m...   255   6e-89
(Q1JQD7) RecName: Full=Molybdenum cofactor biosynthesis protein ...   247   8e-89
(Q8IQF1) RecName: Full=Molybdenum cofactor biosynthesis protein ...   262   8e-89
BC126847_1(BC126847|pid:none) Bos taurus molybdenum cofactor syn...   247   8e-89
AP007151_919(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...   273   1e-88
EU012507_1(EU012507|pid:none) Danio rerio molybdenum cofactor sy...   240   3e-87
protein update 2009. 6.18
PSORT 

 psg: 0.67  gvh: 0.32  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for VFD705 is mit
5' end seq. ID VFD705F
5' end seq. 
>VFD705F.Seq
AAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTATAAC
TAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATTATTC
AAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTCAAAA
TGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATTTAAG
AATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAGGAGT
AATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAAAATT
ATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTAGAAA
AGATGTTGAACCATTAATTGAAGAAGTTGGTAAAATTAAAGGATTACAAAAGATTGGAAT
AACAACAAATGGAATATTATTAAGTAGAAAATTAGATAGATTACATAAAGCTGGTGTGA-
---------
Length of 5' end seq. 539
3' end seq. ID VFD705Z
3' end seq. 
>VFD705Z.Seq
----------GTTTAGATACATTAAATTCTGATAAATTCACATTAATACAAGAAGATTAG
GTTGGGATAGAGTTTTTCAATCAATTGATAATGCATTAAAATTAGATAATATAAAAGTTA
AAGTTAATTGTGTAATAATGAAAGGTTTAAATGATATGGAGATTTGCGATTTTGTTGAAA
TGACAAGAGATAAATCAGTAGAAATTAGGTTTATTGAATATATGCCATTTGATGGTAACC
TTTGGAGTGATAAAAAGTTTTTATCATATACTGATATGATTAAAATTATACATGAAAAGT
ATCCAACATTTAAAAAGTATACAATTGAAGAAGAGGAACCAAATAATACATCGAAAACAT
ATCATGTACCAGGTTTTAAAGGTAAAGTTGGTTTCATACATCAATGAGTGACCATTTTTG
TTCATCTTGTAATAGATTAAGAATTACTGCAGATGGAAACCTAAAGGTTTGTCTCTTTGG
TAATACTGAGGTAAATCTTAGAGATAGAATTAGAGATGGTGCATCCGATCAACAATTATT
AGAAATAATAAATGCCGCTGTTTTAAAGAAAAAAGCTTCTCATGCAGGTATGTAGAGATG
CTCAAAATAAAAA
Length of 3' end seq. 603
Connected seq. ID VFD705P
Connected seq. 
>VFD705P.Seq
AAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTATAAC
TAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATTATTC
AAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTCAAAA
TGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATTTAAG
AATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAGGAGT
AATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAAAATT
ATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTAGAAA
AGATGTTGAACCATTAATTGAAGAAGTTGGTAAAATTAAAGGATTACAAAAGATTGGAAT
AACAACAAATGGAATATTATTAAGTAGAAAATTAGATAGATTACATAAAGCTGGTGTGA-
---------GTTTAGATACATTAAATTCTGATAAATTCACATTAATACAAGAAGATTAGG
TTGGGATAGAGTTTTTCAATCAATTGATAATGCATTAAAATTAGATAATATAAAAGTTAA
AGTTAATTGTGTAATAATGAAAGGTTTAAATGATATGGAGATTTGCGATTTTGTTGAAAT
GACAAGAGATAAATCAGTAGAAATTAGGTTTATTGAATATATGCCATTTGATGGTAACCT
TTGGAGTGATAAAAAGTTTTTATCATATACTGATATGATTAAAATTATACATGAAAAGTA
TCCAACATTTAAAAAGTATACAATTGAAGAAGAGGAACCAAATAATACATCGAAAACATA
TCATGTACCAGGTTTTAAAGGTAAAGTTGGTTTCATACATCAATGAGTGACCATTTTTGT
TCATCTTGTAATAGATTAAGAATTACTGCAGATGGAAACCTAAAGGTTTGTCTCTTTGGT
AATACTGAGGTAAATCTTAGAGATAGAATTAGAGATGGTGCATCCGATCAACAATTATTA
GAAATAATAAATGCCGCTGTTTTAAAGAAAAAAGCTTCTCATGCAGGTATGTAGAGATGC
TCAAAATAAAAA
Length of connected seq. 1142
Full length Seq ID -
Full length Seq. -
Length of full length seq. -