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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD691
Library VF
(Link to library)
Clone ID VFD691
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06086-1
Original site URL
Representative seq. ID VFD691E
(Link to Original site)
Representative DNA sequence 
>VFD691 (VFD691Q) /CSM/VF/VFD6-D/VFD691Q.Seq.d/
ATAATNAGATTTTATTCAGTTGGCTCAATTATTCTTTAGAGAGCAAAACGTTGATCCACC
AGCATCACTTTACACAATAGATAATACAATCGCAAACATAAAGAGTTCATTAGCTGAAGT
TATCAAACCAAATCAAGATCCAAGTTCATTAACTTTCCGTTATATGATGATCGTTGATCC
TTCAGAGAATGAATCATCCATTTCAATTCTAAAAGAGATTGGTATTGAAAATTTAACAAT
TGTTAGAGTTGGTGGTTTTGAAAATGATAGTTCAGAGGAATCATTGGTAGAATGTGTTTC
AACTATTAAATCAATTATGGAAACTGGTGGTACCGTTGTATTGGTCAATAGTGAAAAGAT
TGATTCATGTTTCTATGAAGTTTTCAATAGATACTTTATTTTAACACCTTCTTCAGAACA
TCGTGATCGTTTACAAATGGTTGCAAATATTAGTTTTGGTACTCATTCAGTATTTTGTAC
AGTTCATCCAGACTTTAAAGTTATCATTCATATGCCAATGTCAAGATTAAAGAATACTCA
ATTACCTTGGTTAAATAGATTCGAAAAGTATACAGTATCAATTGATTTATTAACTCAAGA
ATTCATTAGTAAGCATCAATCAAGTACCGATCTATTTAATAACCTTGTGAAGTACTCCAA
TCATTTCGTTGATACACTTCATAATAAAGCAAGTAAAAAATCATTATTAGCTGGATTTTC
TTCAACTGAAACTTGTTCAAGTTTAATTTATCAATTCTTTAAAAATTATGATATGGTTTC
AACAACTACCAATTNTAAAAANAGAGAATTTTATAAATTATTATCAAGTTCACCAACATC
GACAGCAACTTCAATTAAAAATGAACCACAAACATTATTCAATTTTAAATTATTACAAAT
TGCAAAACCAGAATCAATCATTCGTATTAAAGATTCAATTTATCCAATTAATTATTTAAA
GGAATATTTTATCAATCAAGAACATTTTAGNATAGTTAGATTTTTAAAGAATTTATTTAC
AACTAAATATTCAATGAATGAATATATCTCAAATAAATGGGTAATTTTCACTAGAACTTC
TTTGTCATTAACTTCCNTTAAAGATGGTGAAGTTTTACNTGAAATTTTAGGTGATAATTT
AGTTAGATCAATTATAAATAAGAAATTGGTTTCAAAAGATGATGATGGNGATAATGAAAA
TCTCGATCAAATAATGTTAGAAATCAAATAAAAAATAAATAAAAAAAAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence 
*XDFIQLAQLFFREQNVDPPASLYTIDNTIANIKSSLAEVIKPNQDPSSLTFRYMMIVDP
SENESSISILKEIGIENLTIVRVGGFENDSSEESLVECVSTIKSIMETGGTVVLVNSEKI
DSCFYEVFNRYFILTPSSEHRDRLQMVANISFGTHSVFCTVHPDFKVIIHMPMSRLKNTQ
LPWLNRFEKYTVSIDLLTQEFISKHQSSTDLFNNLVKYSNHFVDTLHNKASKKSLLAGFS
STETCSSLIYQFFKNYDMVSTTTNXKXREFYKLLSSSPTSTATSIKNEPQTLFNFKLLQI
AKPESIIRIKDSIYPINYLKEYFINQEHFXIVRFLKNLFTTKYSMNEYISNKWVIFTRTS
LSLTSXKDGEVLXEILGDNLVRSIINKKLVSKDDDGDNENLDQIMLEIK*kinkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ixrfysvgsiil*rakr*stsitlhnr*ynrkhkefis*syqtksrskfinfplyddr*s
fre*iihfnskrdwy*kfnnc*swwf*k**frgiigrmcfny*inygnwwyrcigq**kd
*fmfl*sfq*ilyfntffrts*sftngcky*fwysfsilysssrl*syhsyanvkikeys
itlvk*irkvysin*finsrih**asikyrsi**pcevlqsfr*yts**sk*kiiiswif
fn*nlfkfnlsil*kl*ygfnnyqx*kxril*iiikftnidsnfn*k*ttniiqf*iitn
cktrinhsy*rfnlsn*lfkgifyqsrtf*xs*ifkefiyn*ifne*iylk*mgnfh*nf
fvinfx*rw*sft*nfr**fs*inyk*eigfkr**wx**ksrsnnvrnqiknk*kk


Frame B:
*XDFIQLAQLFFREQNVDPPASLYTIDNTIANIKSSLAEVIKPNQDPSSLTFRYMMIVDP
SENESSISILKEIGIENLTIVRVGGFENDSSEESLVECVSTIKSIMETGGTVVLVNSEKI
DSCFYEVFNRYFILTPSSEHRDRLQMVANISFGTHSVFCTVHPDFKVIIHMPMSRLKNTQ
LPWLNRFEKYTVSIDLLTQEFISKHQSSTDLFNNLVKYSNHFVDTLHNKASKKSLLAGFS
STETCSSLIYQFFKNYDMVSTTTNXKXREFYKLLSSSPTSTATSIKNEPQTLFNFKLLQI
AKPESIIRIKDSIYPINYLKEYFINQEHFXIVRFLKNLFTTKYSMNEYISNKWVIFTRTS
LSLTSXKDGEVLXEILGDNLVRSIINKKLVSKDDDGDNENLDQIMLEIK*kinkkk


Frame C:
nxilfswlnyslesktlihqhhftq*iiqsqt*rvh*lklsnqikiqvh*lsvi**slil
qrmnhpfqf*krlvlki*qllelvvlkmivqrnhw*nvfqllnqlwklvvplywsivkrl
ihvsmkfsidtlf*hllqnivivykwlqilvlvliqyfvqfiqtlklsficqcqd*riln
ylg*idsksiqyqliy*lknslvsinqvpiylitl*stpiislihfiikqvknhy*ldfl
qlklvqv*finslkimiwfqqlpixkxenfinyyqvhqhrqqlqlkmnhkhysilnyykl
qnqnqsfvlkiqfiqlii*rnilsiknilx*ldf*riylqlniq*mnisqing*fslell
ch*lplkmvkfyxkf*vii*ldql*irnwfqkmmmximkisik*c*ksnkk*ikkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD691 (VFD691Q) /CSM/VF/VFD6-D/VFD691Q.Seq.d/                       2387   0.0
VSD772 (VSD772Q) /CSM/VS/VSD7-C/VSD772Q.Seq.d/                         42   0.020
SFI223 (SFI223Q) /CSM/SF/SFI2-A/SFI223Q.Seq.d/                         42   0.020
SFI131 (SFI131Q) /CSM/SF/SFI1-B/SFI131Q.Seq.d/                         42   0.020
AHQ573 (AHQ573Q) /CSM/AH/AHQ5-D/AHQ573Q.Seq.d/                         40   0.080
VSJ874 (VSJ874Q) /CSM/VS/VSJ8-D/VSJ874Q.Seq.d/                         38   0.32
VHP364 (VHP364Q) /CSM/VH/VHP3-C/VHP364Q.Seq.d/                         38   0.32
VHH591 (VHH591Q) /CSM/VH/VHH5-D/VHH591Q.Seq.d/                         38   0.32
VFD319 (VFD319Q) /CSM/VF/VFD3-A/VFD319Q.Seq.d/                         38   0.32
SFJ117 (SFJ117Q) /CSM/SF/SFJ1-A/SFJ117Q.Seq.d/                         38   0.32
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.  2373  0.0  10
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32  0.006  13
AL023828|AL023828.1 Caenorhabditis elegans YAC Y17G7B.            40  0.019  8
AL132633|AL132633.2 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC C-2216L14  of library CalTech-D from chromosome 14 of Homo sapiens (Human).    40  0.047  4
AI332101|AI332101.1 fa94e03.y1 zebrafish fin day1 regeneration Danio rerio cDNA 5', mRNA sequence.    46  0.079  2
AC113526|AC113526.2 Mus musculus clone RP23-265B8, WORKING DRAFT SEQUENCE, 9 unordered pieces.    50  0.10  2
AF149413|AF149413.1 Arabidopsis thaliana BAC T1N24.               44  0.17  4
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           36  0.20  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34  0.23  17
BF459542|T06655, mRNA sequence.    48  0.27  1
dna update 2003. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL645911_7(AL645911|pid:none) Mouse DNA sequence from clone RP23...    72   5e-11
AF329945_2(AF329945|pid:none) Takifugu rubripes SUN-like 1 (SUNL...    63   3e-08
BX647946_1(BX647946|pid:none) Homo sapiens mRNA; cDNA DKFZp686C2...    61   7e-08
AP007151_603(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    39   0.39
AP007281_821(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D...    38   0.87
CU469464_275(CU469464|pid:none) Candidatus Phytoplasma mali stra...    37   1.5
AY180958_1(AY180958|pid:none) Avian infectious bronchitis virus ...    37   1.5
AM920435_941(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    37   1.9
AY542516_1(AY542516|pid:none) Dictyocaulus viviparus isolate L3i...    36   3.3
AY542515_1(AY542515|pid:none) Dictyocaulus viviparus isolate L3i...    36   3.3
protein update 2009. 7.10
PSORT 

 psg: 0.52  gvh: 0.29  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VFD691 is nuc
5' end seq. ID VFD691F
5' end seq. 
>VFD691F.Seq
ATAATNAGATTTTATTCAGTTGGCTCAATTATTCTTTAGAGAGCAAAACGTTGATCCACC
AGCATCACTTTACACAATAGATAATACAATCGCAAACATAAAGAGTTCATTAGCTGAAGT
TATCAAACCAAATCAAGATCCAAGTTCATTAACTTTCCGTTATATGATGATCGTTGATCC
TTCAGAGAATGAATCATCCATTTCAATTCTAAAAGAGATTGGTATTGAAAATTTAACAAT
TGTTAGAGTTGGTGGTTTTGAAAATGATAGTTCAGAGGAATCATTGGTAGAATGTGTTTC
AACTATTAAATCAATTATGGAAACTGGTGGTACCGTTGTATTGGTCAATAGTGAAAAGAT
TGATTCATGTTTCTATGAAGTTTTCAATAGATACTTTATTTTAACACCTTCTTCAGAACA
TCGTGATCGTTTACAAATGGTTGCAAATATTAGTTTTGGTACTCATTCAGTATTTTGTAC
AGTTCATCCAGACTTTAAAGTTATCATTCATATGCCAATGTCAAGATTAAAGAATACTCA
ATTACCTTGGTTAAATAGATTCGAAAAGTATACAGTATCAATTGATTTATTAACTCAAGA
ATTCATTAGTAAGCATCAATCAAGTACCGATCTATT----------
Length of 5' end seq. 636
3' end seq. ID VFD691Z
3' end seq. 
>VFD691Z.Seq
----------TCGAAAAGTATACAGTATCAATTGATTTATTAACTCAAGAATTCATTAGT
AAGCATCAATCAAGTACCGATCTATTTAATAACCTTGTGAAGTACTCCAATCATTTCGTT
GATACACTTCATAATAAAGCAAGTAAAAAATCATTATTAGCTGGATTTTCTTCAACTGAA
ACTTGTTCAAGTTTAATTTATCAATTCTTTAAAAATTATGATATGGTTTCAACAACTACC
AATTNTAAAAANAGAGAATTTTATAAATTATTATCAAGTTCACCAACATCGACAGCAACT
TCAATTAAAAATGAACCACAAACATTATTCAATTTTAAATTATTACAAATTGCAAAACCA
GAATCAATCATTCGTATTAAAGATTCAATTTATCCAATTAATTATTTAAAGGAATATTTT
ATCAATCAAGAACATTTTAGNATAGTTAGATTTTTAAAGAATTTATTTACAACTAAATAT
TCAATGAATGAATATATCTCAAATAAATGGGTAATTTTCACTAGAACTTCTTTGTCATTA
ACTTCCNTTAAAGATGGTGAAGTTTTACNTGAAATTTTAGGTGATAATTTAGTTAGATCA
ATTATAAATAAGAAATTGGTTTCAAAAGATGATGATGGNGATAATGAAAATCTCGATCAA
ATAATGTTAGAAATCAAATAAAAAATAAATAAAAAAAAAA
Length of 3' end seq. 690
Connected seq. ID VFD691P
Connected seq. 
>VFD691P.Seq
ATAATNAGATTTTATTCAGTTGGCTCAATTATTCTTTAGAGAGCAAAACGTTGATCCACC
AGCATCACTTTACACAATAGATAATACAATCGCAAACATAAAGAGTTCATTAGCTGAAGT
TATCAAACCAAATCAAGATCCAAGTTCATTAACTTTCCGTTATATGATGATCGTTGATCC
TTCAGAGAATGAATCATCCATTTCAATTCTAAAAGAGATTGGTATTGAAAATTTAACAAT
TGTTAGAGTTGGTGGTTTTGAAAATGATAGTTCAGAGGAATCATTGGTAGAATGTGTTTC
AACTATTAAATCAATTATGGAAACTGGTGGTACCGTTGTATTGGTCAATAGTGAAAAGAT
TGATTCATGTTTCTATGAAGTTTTCAATAGATACTTTATTTTAACACCTTCTTCAGAACA
TCGTGATCGTTTACAAATGGTTGCAAATATTAGTTTTGGTACTCATTCAGTATTTTGTAC
AGTTCATCCAGACTTTAAAGTTATCATTCATATGCCAATGTCAAGATTAAAGAATACTCA
ATTACCTTGGTTAAATAGATTCGAAAAGTATACAGTATCAATTGATTTATTAACTCAAGA
ATTCATTAGTAAGCATCAATCAAGTACCGATCTATT----------TCGAAAAGTATACA
GTATCAATTGATTTATTAACTCAAGAATTCATTAGTAAGCATCAATCAAGTACCGATCTA
TTTAATAACCTTGTGAAGTACTCCAATCATTTCGTTGATACACTTCATAATAAAGCAAGT
AAAAAATCATTATTAGCTGGATTTTCTTCAACTGAAACTTGTTCAAGTTTAATTTATCAA
TTCTTTAAAAATTATGATATGGTTTCAACAACTACCAATTNTAAAAANAGAGAATTTTAT
AAATTATTATCAAGTTCACCAACATCGACAGCAACTTCAATTAAAAATGAACCACAAACA
TTATTCAATTTTAAATTATTACAAATTGCAAAACCAGAATCAATCATTCGTATTAAAGAT
TCAATTTATCCAATTAATTATTTAAAGGAATATTTTATCAATCAAGAACATTTTAGNATA
GTTAGATTTTTAAAGAATTTATTTACAACTAAATATTCAATGAATGAATATATCTCAAAT
AAATGGGTAATTTTCACTAGAACTTCTTTGTCATTAACTTCCNTTAAAGATGGTGAAGTT
TTACNTGAAATTTTAGGTGATAATTTAGTTAGATCAATTATAAATAAGAAATTGGTTTCA
AAAGATGATGATGGNGATAATGAAAATCTCGATCAAATAATGTTAGAAATCAAATAAAAA
ATAAATAAAAAAAAAA
Length of connected seq. 1326
Full length Seq ID VFD691E
Full length Seq. 
>VFD691E.Seq
ATAATNAGATTTTATTCAGTTGGCTCAATTATTCTTTAGAGAGCAAAACGTTGATCCACC
AGCATCACTTTACACAATAGATAATACAATCGCAAACATAAAGAGTTCATTAGCTGAAGT
TATCAAACCAAATCAAGATCCAAGTTCATTAACTTTCCGTTATATGATGATCGTTGATCC
TTCAGAGAATGAATCATCCATTTCAATTCTAAAAGAGATTGGTATTGAAAATTTAACAAT
TGTTAGAGTTGGTGGTTTTGAAAATGATAGTTCAGAGGAATCATTGGTAGAATGTGTTTC
AACTATTAAATCAATTATGGAAACTGGTGGTACCGTTGTATTGGTCAATAGTGAAAAGAT
TGATTCATGTTTCTATGAAGTTTTCAATAGATACTTTATTTTAACACCTTCTTCAGAACA
TCGTGATCGTTTACAAATGGTTGCAAATATTAGTTTTGGTACTCATTCAGTATTTTGTAC
AGTTCATCCAGACTTTAAAGTTATCATTCATATGCCAATGTCAAGATTAAAGAATACTCA
ATTACCTTGGTTAAATAGATTCGAAAAGTATACAGTATCAATTGATTTATTAACTCAAGA
ATTCATTAGTAAGCATCAATCAAGTACCGATCTATTTAATAACCTTGTGAAGTACTCCAA
TCATTTCGTTGATACACTTCATAATAAAGCAAGTAAAAAATCATTATTAGCTGGATTTTC
TTCAACTGAAACTTGTTCAAGTTTAATTTATCAATTCTTTAAAAATTATGATATGGTTTC
AACAACTACCAATTNTAAAAANAGAGAATTTTATAAATTATTATCAAGTTCACCAACATC
GACAGCAACTTCAATTAAAAATGAACCACAAACATTATTCAATTTTAAATTATTACAAAT
TGCAAAACCAGAATCAATCATTCGTATTAAAGATTCAATTTATCCAATTAATTATTTAAA
GGAATATTTTATCAATCAAGAACATTTTAGNATAGTTAGATTTTTAAAGAATTTATTTAC
AACTAAATATTCAATGAATGAATATATCTCAAATAAATGGGTAATTTTCACTAGAACTTC
TTTGTCATTAACTTCCNTTAAAGATGGTGAAGTTTTACNTGAAATTTTAGGTGATAATTT
AGTTAGATCAATTATAAATAAGAAATTGGTTTCAAAAGATGATGATGGNGATAATGAAAA
TCTCGATCAAATAATGTTAGAAATCAAATAAAAAATAAATAAAAAAAAAA
Length of full length seq. 1250