VFD555
Library VF
(Link to library)
Clone ID VFD555
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13202-1
Original site URL
Representative seq. ID VFD555E
(Link to Original site)
Representative DNA sequence
>VFD555 (VFD555Q) /CSM/VF/VFD5-C/VFD555Q.Seq.d/
ATTTTCATTTTCTGCAGTAATAATAAAATCAAATAAAAAAAAATATAAAATGAGAGTATT
ATTATCATTAGTTGTAATTTTATTCATTATAAATTCAGCCTTTGCTGTAAAGATTAATAT
TGGTCGTCCAACCAAATCACATAAAACTATCCATCACGAAACTTGGGTAGAAGAACAAAC
TGATCAATTCGATAATATTAAAGTTGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAG
ACCAAAACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAA
TGCTCAAACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATG
TGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAA
TAATGAAAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGG
TTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATC
AGAAGAATGTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAA
TTTTGTCAACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTC
TCAAGACAAACATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCA
AGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGC
TTACAAATCTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAA
ACTCGTTGGTTTCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGAC
AACTTCATGGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGA
TGACGTTGTTGCGGTTACCATAAATAAAAATAAGTTTTAAACATTTT
sequence update 2001. 6. 9
Translated Amino Acid sequence
FSFSAVIIKSNKKKYKMRVLLSLVVILFIINSAFAVKINIGRPTKSHKTIHHETWVEEQT
DQFDNIKVGQLLGFKRSPNRPKLQIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARC
GSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVS
EECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQ
EIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWT
TSWGDNGTFLIKRGDCGISDDVVAVTINKNKF*tf


Translated Amino Acid sequence (All Frames)
Frame A:
ififcsnnkik*kki*nesiiiiscnfihykfslcckd*ywssnqit*nypsrnlgrrtn
*sir*y*swpiirfqekskqtktsn*il*sirssnsnffqcsnqlaklyyh*sdsksskm
wfllgfwcyrisy*sfmysq**kcsikfygygyl**n**rl*rw*cllcmelvkkarcci
rrmssiynsnlstssttmfkfcqhsimy*rvsikflfnlfsrqt*ng*nlffrl**snha
rncy*wssrslfhcl*rfpclqiwclrphnw*rfrwslc*trwfrylkwc*llcr*qpmd
nfmg**wnflnqtw*lryl**rccgyhk*k*vlni


Frame B:
FSFSAVIIKSNKKKYKMRVLLSLVVILFIINSAFAVKINIGRPTKSHKTIHHETWVEEQT
DQFDNIKVGQLLGFKRSPNRPKLQIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARC
GSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVS
EECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQ
EIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWT
TSWGDNGTFLIKRGDCGISDDVVAVTINKNKF*tf


Frame C:
fhflq***nqikknik*eyyyh*l*fysl*iqpll*rlilvvqpnhiklsitklg*knkl
insiilklany*vsrevqtdqnfklnlmih*efkfqllsmlkptgqivlplvrfkikqdv
vlvgllvlqnqllivyvftimkmfn*vlwiwllvmklitvvkvvmpslhgig*eskvlyq
knvfhiqfqlvhqlnnhv*ilstlhhvlksvnqipl*filktnikwlkfilstlmkqsck
klllmvqsklvslslkislltnlvftstqlvki*vvtvlnslvsvp*mvlitmplttngq
lhgvimels*snvviavslmtllrlp*ikisfkhf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD555 (VFD555Q) /CSM/VF/VFD5-C/VFD555Q.Seq.d/ 1943 0.0
VSD136 (VSD136Q) /CSM/VS/VSD1-B/VSD136Q.Seq.d/ 1897 0.0
SLH613 (SLH613Q) /CSM/SL/SLH6-A/SLH613Q.Seq.d/ 1885 0.0
VFI438 (VFI438Q) /CSM/VF/VFI4-B/VFI438Q.Seq.d/ 1861 0.0
VFI213 (VFI213Q) /CSM/VF/VFI2-A/VFI213Q.Seq.d/ 1861 0.0
VFH406 (VFH406Q) /CSM/VF/VFH4-A/VFH406Q.Seq.d/ 1855 0.0
VFE574 (VFE574Q) /CSM/VF/VFE5-D/VFE574Q.Seq.d/ 1846 0.0
VFI120 (VFI120Q) /CSM/VF/VFI1-A/VFI120Q.Seq.d/ 1828 0.0
VFK428 (VFK428Q) /CSM/VF/VFK4-B/VFK428Q.Seq.d/ 1786 0.0
VFN645 (VFN645Q) /CSM/VF/VFN6-B/VFN645Q.Seq.d/ 1742 0.0

own update 2001.12. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG132206|BG132206.1 EST465098 tomato crown gall Lycopersicon esculentum cDNA clone cTOE6F18 5' sequence, mRNA sequence. 54 8e-05 2
BE436257|BE436257.1 EST407335 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG31A14, mRNA sequence. 54 0.003 1
CB290208|CB290208.1 UCRCS01_01aa10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence. 54 0.003 1
CB292489|CB292489.1 UCRCS01_04cd07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence. 54 0.003 1
BQ119333|BQ119333.2 EST604909 mixed potato tissues Solanum tuberosum cDNA clone STMEI96 5' end, mRNA sequence. 54 0.003 1
BI933918|BI933918.1 EST553807 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD18C22 5' end, mRNA sequence. 54 0.003 1
X81995|X81995.1 N.rustica mRNA for cathepsin B-like cysteine proteinase. 54 0.003 1
BE433115|BE433115.1 EST399644 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG12E22, mRNA sequence. 54 0.003 1
BM413574|BM413574.1 EST587901 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG63F18 5' end, mRNA sequence. 54 0.003 1
CA522795|CA522795.1 KS12012H05 KS12 Capsicum annuum cDNA, mRNA sequence. 54 0.003 1
dna update 2003. 9.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QD9) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 627 e-178
AC149038_4(AC149038|pid:none) Medicago truncatula chromosome 7 c... 239 1e-61
(P00787) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 235 2e-60
AB377273_1(AB377273|pid:none) Raphanus sativus CatB mRNA for cat... 235 2e-60
BC072490_1(BC072490|pid:none) Rattus norvegicus cathepsin B, mRN... 234 5e-60
AF083797_1(AF083797|pid:none) Arabidopsis thaliana clone sps897 ... 234 5e-60
(P07688) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 234 5e-60
M11305_1(M11305|pid:none) Rat cathepsin B mRNA, 3' end. 233 6e-60
(A1E295) RecName: Full=Cathepsin B; EC=3.4.22.1; Contai... 233 1e-59
AC149038_3(AC149038|pid:none) Medicago truncatula chromosome 7 c... 232 1e-59
protein update 2009. 7.10
PSORT

psg: 0.37 gvh: 0.68 alm: 0.19 top: 0.47 tms: 0.07 mit: 0.39 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.26 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
20.0 %: mitochondrial
20.0 %: Golgi
12.0 %: cytoplasmic
8.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for VFD555 is nuc

5' end seq. ID VFD555F
5' end seq.
>VFD555F.Seq
ATTTTCATTTTCTGCAGTAATAATAAAATCAAATAAAAAAAAATATAAAATGAGAGTATT
ATTATCATTAGTTGTAATTTTATTCATTATAAATTCAGCCTTTGCTGTAAAGATTAATAT
TGGTCGTCCAACCAAATCACATAAAACTATCCATCACGAAACTTGGGTAGAAGAACAAAC
TGATCAATTCGATAATATTAAAGTTGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAG
ACCAAAACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAA
TGCTCAAACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATG
TGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAA
TAATGAAAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGG
TTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTGGT----------
Length of 5' end seq. 518
3' end seq. ID VFD555Z
3' end seq.
>VFD555Z.Seq
----------AAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTT
GTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAA
ATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAG
GTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAAT
GTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCA
ACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACA
AACATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTG
TTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAAT
CTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTG
GTTTCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCAT
GGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTG
TTGCGGTTACCATAAATAAAAATAAGTTTTAAACATTTT
Length of 3' end seq. 689
Connected seq. ID VFD555P
Connected seq.
>VFD555P.Seq
ATTTTCATTTTCTGCAGTAATAATAAAATCAAATAAAAAAAAATATAAAATGAGAGTATT
ATTATCATTAGTTGTAATTTTATTCATTATAAATTCAGCCTTTGCTGTAAAGATTAATAT
TGGTCGTCCAACCAAATCACATAAAACTATCCATCACGAAACTTGGGTAGAAGAACAAAC
TGATCAATTCGATAATATTAAAGTTGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAG
ACCAAAACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAA
TGCTCAAACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATG
TGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAA
TAATGAAAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGG
TTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTGGT----------AAATTGTACTAC
CATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCTACAGA
ATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTTATGGA
TATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCTGCATG
GAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAATTCCAAC
TTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATGTACTAAAGA
GTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGCTAAAATTTA
TTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGC
TTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGTCCACACAAC
TGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTTAAATGGTGT
TGATTACTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGGAACTTTCTT
AATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCGGTTACCATAAATAAAAA
TAAGTTTTAAACATTTT
Length of connected seq. 1207
Full length Seq ID VFD555E
Full length Seq.
>VFD555E.Seq
ATTTTCATTTTCTGCAGTAATAATAAAATCAAATAAAAAAAAATATAAAATGAGAGTATT
ATTATCATTAGTTGTAATTTTATTCATTATAAATTCAGCCTTTGCTGTAAAGATTAATAT
TGGTCGTCCAACCAAATCACATAAAACTATCCATCACGAAACTTGGGTAGAAGAACAAAC
TGATCAATTCGATAATATTAAAGTTGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAG
ACCAAAACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAA
TGCTCAAACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATG
TGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAA
TAATGAAAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGG
TTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATC
AGAAGAATGTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAA
TTTTGTCAACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTC
TCAAGACAAACATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCA
AGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGC
TTACAAATCTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAA
ACTCGTTGGTTTCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGAC
AACTTCATGGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGA
TGACGTTGTTGCGGTTACCATAAATAAAAATAAGTTTTAAACATTTT
Length of full length seq. 1007