VFD505
Library VF
(Link to library)
Clone ID VFD505
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01356-1
Original site URL
Representative seq. ID VFD505P
(Link to Original site)
Representative DNA sequence
>VFD505 (VFD505Q) /CSM/VF/VFD5-A/VFD505Q.Seq.d/
AAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTATAAC
TAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATTATTC
AAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTCAAAA
TGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATTTAAG
AATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAGGAGT
AATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAAAATT
ATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTAGAAA
AGATGTTGAACCATTAATTGAAGANGTTGGTAAAATTAAAGGATTACAAAAGATTGGAAT
AACAACAAATGGAATATTATTAAGTAGAAAATTAGATNGATTACATAAAGCXXXXXXXXX
XAAGATTAGGTTGGGGATAGAGTTTTTCAAACCAATTGATAATGCATTAAAATTTAGATA
ATATAAAAGTTAAAGTTNATTGTGTAATAATGAAAAGGTTTAAATGATATGGGAGATTTG
CGATTTTGTTGAAATGACAAGAGATAAATCAGTAGAAATTAGGTTTATTGAATATATGCC
ATTTGATGGTAACCTTTGGAGTGATAAAAAGTTTTTATCATATACTGATATGATTAAAAT
TATACATGAAAAGTATCCAACATTTAAAAAGTATACAATTGAAGAAGAGGAACCAAATAA
TACATCGAAAACATATCATGTACCAGGTTTTAAAGGTAAAGTTGGTTTCATACATCAATG
AGTGACCATTTTTGTTCATCTTGTAATAGATTAAGAATTACTGCAGATGGAAACCTAAAG
GTTTGTCTCTTTGGTAATACTGAGGTAAATCTTAGAGATAGAATTAGAGATGGTGCATCC
GATCTACAATTATTAGAAATAATAAATGCCGCTGTTTTAAAGAAAAAAGCTTCTCATGCA
GGTATGTATGAGATTGCTCAAAATAAAAATAGACCAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
k****KNTYAMTNIIKSFITRNTYLNKLSPSPYQFNKYYSNSISTPPTHSYEKKQQPIQN
VDDKKYILTDRFNRHHTYLRISLTERCNLRCKYCMPEEGVMLSQADKILTTDEIIRLSKL
FVSAGVNKIRFTGGEPLVRKDVEPLIEXVGKIKGLQKIGITTNGILLSRKLDXLHK---

---KIRLGIEFFKPIDNALKFR*yks*sxlcnnekv*miweicdfvemtrdksveirfie
ympfdgnlwsdkkflsytdmikiihekyptfkkytieeeepnntsktyhvpgfkgkvgfi
hq*vtifvhlvid*ellqmet*rfvslvilr*ileielemvhpiyny*k**mplf*rkkl
lmqvcmrllkikidq


Translated Amino Acid sequence (All Frames)
Frame A:
kiiiikkhicndkynkifyn*kyifk*iititipi**ilfkfninttntfi*kktttnsk
c***kiyfnr*i**tsylfkniinrkmqftl*ilya*rrsnvits**nfnh**ny*iiki
irisrck*n*ihww*tis*krc*tin*rxw*n*ritkdwnnnkwniik*kirxit*s---

---KIRLGIEFFKPIDNALKFR*yks*sxlcnnekv*miweicdfvemtrdksveirfie
ympfdgnlwsdkkflsytdmikiihekyptfkkytieeeepnntsktyhvpgfkgkvgfi
hq*vtifvhlvid*ellqmet*rfvslvilr*ileielemvhpiyny*k**mplf*rkkl
lmqvcmrllkikidq

Frame B:
k****KNTYAMTNIIKSFITRNTYLNKLSPSPYQFNKYYSNSISTPPTHSYEKKQQPIQN
VDDKKYILTDRFNRHHTYLRISLTERCNLRCKYCMPEEGVMLSQADKILTTDEIIRLSKL
FVSAGVNKIRFTGGEPLVRKDVEPLIEXVGKIKGLQKIGITTNGILLSRKLDXLHK---

---rlgwg*sfsnqlimh*nldnikvkvxcvimkrfk*ygrfaillk*qeinq*klglln
ichlmvtfgviksfyhili*lklymksiqhlksiqlkkrnqiihrkhimyqvlkvklvsy
ine*pflfil**iknycrwkpkglslw*y*gks*r*n*rwcirstiirnnkcrcfkeksf
scryv*dcsk*k*t

Frame C:
nnnnkkthmq*qi**nll*leihi*inyhhhhtnliniiqiqyqhhqhihmkknnnqfkm
lmiknif*qidlidiili*eyh*qkdaiyvvnivclkke*cyhklikf*plmklldyqny
syqqv*ikldslvvnh*lekmlnh*lkxlvklkdykrle*qqmeyy*ven*xdyik---

---d*vgdrvfqtn**ciki*ii*klkxiv***kglndmgdlrfc*ndkr*isrn*vy*i
yai*w*ple**kvfiiy*yd*nyt*kvsni*kvyn*rrgtk*yienisctrf*r*swfht
smsdhfcsscnrlritadgnlkvclfgntevnlrdrirdgasdlqlleiinaavlkkkas
hagmyeiaqnknrp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD505 (VFD505Q) /CSM/VF/VFD5-A/VFD505Q.Seq.d/ 1992 0.0
VFD705 (VFD705Q) /CSM/VF/VFD7-A/VFD705Q.Seq.d/ 993 0.0
SLH306 (SLH306Q) /CSM/SL/SLH3-A/SLH306Q.Seq.d/ 971 0.0
VHK249 (VHK249Q) /CSM/VH/VHK2-C/VHK249Q.Seq.d/ 40 0.071
FC-BN06 (FC-BN06Q) /CSM/FC/FC-BN/FC-BN06Q.Seq.d/ 40 0.071
SSM387 (SSM387Q) /CSM/SS/SSM3-D/SSM387Q.Seq.d/ 38 0.28
SFK836 (SFK836Q) /CSM/SF/SFK8-B/SFK836Q.Seq.d/ 38 0.28
CHN629 (CHN629Q) /CSM/CH/CHN6-B/CHN629Q.Seq.d/ 38 0.28
VSH730 (VSH730Q) /CSM/VS/VSH7-B/VSH730Q.Seq.d/ 36 1.1
VSC393 (VSC393Q) /CSM/VS/VSC3-D/VSC393Q.Seq.d/ 36 1.1

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BM774794|BM774794.1 ra97g03.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence. 72 2e-20 3
BI747135|BI747135.1 rm36d04.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to SW:YL71_CAEEL Q20624 HYPOTHETICAL 64.9 KD PROTEIN F49E2.1 IN CHROMOSOME X. [1] ;, mRNA sequence. 72 2e-20 3
BM773715|BM773715.1 ra85b05.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence. 72 3e-18 3
BM881619|BM881619.1 rb12a07.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:O75710 O75710 MOCS1A PROTEIN. ;, mRNA sequence. 72 4e-18 2
BM881752|BM881752.1 rb13f01.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence. 72 4e-18 2
BM882143|BM882143.1 rb26c12.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:O75710 O75710 MOCS1A PROTEIN. ;, mRNA sequence. 72 6e-17 2
BM881593|BM881593.1 rb11g01.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence. 58 2e-16 3
BM882426|BM882426.1 rb01e10.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence. 56 8e-16 3
BU094837|BU094837.1 rf54g10.y2 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:O14940 O14940 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A. ;, mRNA sequence. 56 8e-10 2
BM881100|BM881100.1 rb06a04.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q9XV04 Q9XV04 F49H6.5 PROTEIN. [1] ;, mRNA sequence. 48 3e-06 3
dna update 2003. 9.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54NM6) RecName: Full=Molybdenum cofactor biosynthesis protein ... 493 e-176
AE014296_2010(AE014296|pid:none) Drosophila melanogaster chromos... 221 8e-80
AF214021_1(AF214021|pid:none) Drosophila melanogaster molybdenum... 221 8e-80
(Q1JQD7) RecName: Full=Molybdenum cofactor biosynthesis protein ... 205 2e-79
BC126847_1(BC126847|pid:none) Bos taurus molybdenum cofactor syn... 205 2e-79
AF034374_1(AF034374|pid:none) Homo sapiens molybdenum cofactor b... 201 2e-78
(Q5TCE2) RecName: Full=Molybdenum cofactor biosynthesis protein ... 200 3e-78
BC140421_1(BC140421|pid:none) Synthetic construct Homo sapiens c... 200 3e-78
CR860199_1(CR860199|pid:none) Pongo abelii mRNA; cDNA DKFZp469D1... 199 1e-77
AL136089_6(AL136089|pid:none) Human DNA sequence from clone RP1-... 197 2e-77
protein update 2009. 6.18
PSORT

psg: 0.67 gvh: 0.32 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.47 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: mitochondrial
12.0 %: cytoplasmic
12.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for VFD505 is mit

5' end seq. ID VFD505F
5' end seq.
>VFD505F.Seq
AAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTATAAC
TAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATTATTC
AAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTCAAAA
TGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATTTAAG
AATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAGGAGT
AATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAAAATT
ATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTAGAAA
AGATGTTGAACCATTAATTGAAGANGTTGGTAAAATTAAAGGATTACAAAAGATTGGAAT
AACAACAAATGGAATATTATTAAGTAGAAAATTAGATNGATTACATAAAGC---------
-
Length of 5' end seq. 531
3' end seq. ID VFD505Z
3' end seq.
>VFD505Z.Seq
----------AAGATTAGGTTGGGGATAGAGTTTTTCAAACCAATTGATAATGCATTAAA
ATTTAGATAATATAAAAGTTAAAGTTNATTGTGTAATAATGAAAAGGTTTAAATGATATG
GGAGATTTGCGATTTTGTTGAAATGACAAGAGATAAATCAGTAGAAATTAGGTTTATTGA
ATATATGCCATTTGATGGTAACCTTTGGAGTGATAAAAAGTTTTTATCATATACTGATAT
GATTAAAATTATACATGAAAAGTATCCAACATTTAAAAAGTATACAATTGAAGAAGAGGA
ACCAAATAATACATCGAAAACATATCATGTACCAGGTTTTAAAGGTAAAGTTGGTTTCAT
ACATCAATGAGTGACCATTTTTGTTCATCTTGTAATAGATTAAGAATTACTGCAGATGGA
AACCTAAAGGTTTGTCTCTTTGGTAATACTGAGGTAAATCTTAGAGATAGAATTAGAGAT
GGTGCATCCGATCTACAATTATTAGAAATAATAAATGCCGCTGTTTTAAAGAAAAAAGCT
TCTCATGCAGGTATGTATGAGATTGCTCAAAATAAAAATAGACCAA
Length of 3' end seq. 576
Connected seq. ID VFD505P
Connected seq.
>VFD505P.Seq
AAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTATAAC
TAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATTATTC
AAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTCAAAA
TGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATTTAAG
AATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAGGAGT
AATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAAAATT
ATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTAGAAA
AGATGTTGAACCATTAATTGAAGANGTTGGTAAAATTAAAGGATTACAAAAGATTGGAAT
AACAACAAATGGAATATTATTAAGTAGAAAATTAGATNGATTACATAAAGC---------
-AAGATTAGGTTGGGGATAGAGTTTTTCAAACCAATTGATAATGCATTAAAATTTAGATA
ATATAAAAGTTAAAGTTNATTGTGTAATAATGAAAAGGTTTAAATGATATGGGAGATTTG
CGATTTTGTTGAAATGACAAGAGATAAATCAGTAGAAATTAGGTTTATTGAATATATGCC
ATTTGATGGTAACCTTTGGAGTGATAAAAAGTTTTTATCATATACTGATATGATTAAAAT
TATACATGAAAAGTATCCAACATTTAAAAAGTATACAATTGAAGAAGAGGAACCAAATAA
TACATCGAAAACATATCATGTACCAGGTTTTAAAGGTAAAGTTGGTTTCATACATCAATG
AGTGACCATTTTTGTTCATCTTGTAATAGATTAAGAATTACTGCAGATGGAAACCTAAAG
GTTTGTCTCTTTGGTAATACTGAGGTAAATCTTAGAGATAGAATTAGAGATGGTGCATCC
GATCTACAATTATTAGAAATAATAAATGCCGCTGTTTTAAAGAAAAAAGCTTCTCATGCA
GGTATGTATGAGATTGCTCAAAATAAAAATAGACCAA
Length of connected seq. 1107
Full length Seq ID -
Full length Seq. -
Length of full length seq. -