NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD504
Library VF
(Link to library)
Clone ID VFD504
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID VFD504Z
(Link to Original site)
Representative DNA sequence 
>VFD504 (VFD504Q) /CSM/VF/VFD5-A/VFD504Q.Seq.d/
XXXXXXXXXXTATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTCTGG
ATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATAAACAA
GTTGGTTTCGCAACTGCCTTCAAGGTTAANTTTTTTAATTAATTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---CLSGFMGIELNMGNFWILGDVFISAYYTVFDFGNKQVGFATAFKVXFFN*f
Translated Amino Acid sequence (All Frames) 
Frame A:
---mfewiygyrvkhgkfldpw*cfhlcllycirfw**tswfrnclqg*xf*li


Frame B:
---CLSGFMGIELNMGNFWILGDVFISAYYTVFDFGNKQVGFATAFKVXFFN*f


Frame C:
---v*vdlwvss*tweisgslvmfsslltilysilvinklvsqlpsrlxflinl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD504 (VFD504Q) /CSM/VF/VFD5-A/VFD504Q.Seq.d/                        303   4e-82
VSF331 (VSF331Q) /CSM/VS/VSF3-B/VSF331Q.Seq.d/                        287   2e-77
VSF779 (VSF779Q) /CSM/VS/VSF7-D/VSF779Q.Seq.d/                        283   4e-76
VSF661 (VSF661Q) /CSM/VS/VSF6-C/VSF661Q.Seq.d/                        283   4e-76
AFA493 (AFA493Q) /CSM/AF/AFA4-D/AFA493Q.Seq.d/                        283   4e-76
VSE201 (VSE201Q) /CSM/VS/VSE2-A/VSE201Q.Seq.d/                        281   2e-75
SFC596 (SFC596Q) /CSM/SF/SFC5-D/SFC596Q.Seq.d/                        278   2e-74
VSJ124 (VSJ124Q) /CSM/VS/VSJ1-A/VSJ124Q.Seq.d/                        274   4e-73
VSJ108 (VSJ108Q) /CSM/VS/VSJ1-A/VSJ108Q.Seq.d/                        274   4e-73
VSF544 (VSF544Q) /CSM/VS/VSF5-B/VSF544Q.Seq.d/                        274   4e-73
own update 2001.10.16
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D.   252  1e-68  3
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2.   252  1e-68  3
AU114847|AU114847.1 Caenorhabditis elegans cDNA clone:yk722b9 : 3' end, single read.    34  0.67  2
AA525688|AA525688.1 EST192 Sugarcane leaf roll Saccharum sp. cDNA clone F26-rev similar to Aspartic proteinase precursor, mRNA sequence.    42  1.9  1
AW703806|AW703806.1 sk13a02.y1 Gm-c1023 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1023-3939 5' similar to TR:Q43409 Q43409 ASPARTIC PROTEASE ;, mRNA sequence.    42  1.9  1
BG411817|BG411817.1 OV2_38_D12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence.    42  1.9  1
AW706656|AW706656.1 sk01b09.y1 Gm-c1023 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1023-2802 5' similar to SW:ASPR_CUCPE O04057 ASPARTIC PROTEINASE PRECURSOR ;, mRNA sequence.    42  1.9  1
CF071223|CF071223.1 FE1_16_D02.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_16_D02_A002 3', mRNA sequence.    42  1.9  1
BG404959|BG404959.1 sac46c02.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-2812 5' similar to TR:Q41713 Q41713 ASPARTIC PROTEINASE. ;, mRNA sequence.    42  1.9  1
CF072833|CF072833.1 FE1_26_E11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_26_E11_A002 3', mRNA sequence.    42  1.9  1
dna update 2003. 9.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ131585_1(DQ131585|pid:none) Opisthorchis viverrini cathepsin D...    68   9e-11
DQ909010_1(DQ909010|pid:none) Clonorchis sinensis aspartic prote...    68   9e-11
AB078420_1(AB078420|pid:none) Brugia malayi asp-2 mRNA for aspar...    67   3e-10
AF420068_1(AF420068|pid:none) Clonorchis sinensis aspartic prote...    64   2e-09
FJ168036_1(FJ168036|pid:none) Fasciola hepatica cathepsin D-like...    63   4e-09
EF000001_1(EF000001|pid:none) Fasciola hepatica cathepsin D-like...    63   4e-09
(Q03168) RecName: Full=Lysosomal aspartic protease;          EC=...    62   6e-09
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ...    62   8e-09
AJ579366_1(AJ579366|pid:none) Chlamydomonas reinhardtii mRNA for...    62   8e-09
BC075272_1(BC075272|pid:none) Xenopus tropicalis cathepsin D (ly...    62   8e-09
protein update 2009. 6.18
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VFD504 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFD504Z
3' end seq. 
>VFD504Z.Seq
----------TATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTCTGG
ATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATAAACAA
GTTGGTTTCGCAACTGCCTTCAAGGTTAANTTTTTTAATTAATTTA
Length of 3' end seq. 156
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -