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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM321
Library AF
(Link to library)
Clone ID AFM321
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM321 (AFM321Q) /CSM/AF/AFM3-A/AFM321Q.Seq.d/
AATTATAACAATTATTAAAAACAAAAAGATATTTTGTTTTTTCTTGTTTTCTTTATTCAC
ATTACTATTTCAATTTAATTTTTTACAACCATCGTCATCAATAAAATCAAAATTGGAATT
TAAATCACCAATTGAAATTAAGATGATGAAGCCAGATTTAAATAGTCCATTACCACAATC
ACCACAACTTCAATCATTTGGAAGTAGATCATCAGATCTTGCAACCGAGGATTTATTTTT
GAAGAAATTGGAAGCAATCTCACAAACTGCACCAAATGAAACAGTAAAGAATGAATTTTT
AAACAAAGAAATACCATCTATCAACAAATTGTTTACCCGTTTCTTAAAGAATAGAAAGAA
AGTAATCGATTGGGATAAAATCAATCCACCACCAGCTGATATGGTTTTAAACTATAAAGA
TTTACCAGCAATCACCGAACAAAGAACTTCAGAACTCGCTTCAAAATTGGCTGTTTTGAA
ATTAAATGGAGGTTTAGGTACAACAATGGGTTGTACTGGTCCAAAGAGTGTTATTGAAGT
TAGAAGTGAAAAAACTTTCTTAGATTTAAGTGTTCAACAAATTAAAGAAATGAATGAAAG
ATATAATATTAAAGTACCATTAGTATTAATGAATTCATTTAATACTCATCAAGAAACTGG
TAAAATCATTCAAAXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence 
IITIIKNKKIFCFFLFSLFTLLFQFNFLQPSSSIKSKLEFKSPIEIKMMKPDLNSPLPQS
PQLQSFGSRSSDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKK
VIDWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGPKSVIEV
RSEKTFLDLSVQQIKEMNERYNIKVPLVLMNSFNTHQETGKIIQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
nynny*kqkdilfflvffihitisi*ffttivinkikigi*itn*n*ddearfk*sitti
tttsiiwk*iirscnrgfifeeigsnltnctk*nske*ifkqrntiyqqivypflke*ke
snrlg*nqstts*ygfkl*rftsnhrtknfrtrfkigcfeikwrfrynnglywskecy*s
*k*knflrfkcstn*rne*ki*y*stisinefi*yssrnw*nhs---


Frame B:
IITIIKNKKIFCFFLFSLFTLLFQFNFLQPSSSIKSKLEFKSPIEIKMMKPDLNSPLPQS
PQLQSFGSRSSDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKK
VIDWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGPKSVIEV
RSEKTFLDLSVQQIKEMNERYNIKVPLVLMNSFNTHQETGKIIQ---


Frame C:
l*qllktkryfvfscflyshyyfnlifynhrhq*nqnwnlnhqlklr**sqi*ivhyhnh
hnfnhlevdhqilqpriyf*rnwkqshklhqmkq*rmnf*tkkyhlstnclpvs*rierk
*sigiksihhqliwf*tikiyqqspnkelqnslqnwlf*n*mev*vqqwvvlvqrvllkl
evkkls*i*vfnklkk*mkdiilkyh*y**ihlilikklvksf---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM321 (AFM321Q) /CSM/AF/AFM3-A/AFM321Q.Seq.d/                       1170   0.0
VFK661 (VFK661Q) /CSM/VF/VFK6-C/VFK661Q.Seq.d/                       1162   0.0
AFK129 (AFK129Q) /CSM/AF/AFK1-B/AFK129Q.Seq.d/                       1162   0.0
AFA638 (AFA638Q) /CSM/AF/AFA6-B/AFA638Q.Seq.d/                       1162   0.0
SFC341 (SFC341Q) /CSM/SF/SFC3-B/SFC341Q.Seq.d/                       1144   0.0
CFE266 (CFE266Q) /CSM/CF/CFE2-C/CFE266Q.Seq.d/                       1128   0.0
VFA701 (VFA701Q) /CSM/VF/VFA7-A/VFA701Q.Seq.d/                       1120   0.0
CFD837 (CFD837Q) /CSM/CF/CFD8-B/CFD837Q.Seq.d/                       1120   0.0
AFL889 (AFL889Q) /CSM/AF/AFL8-D/AFL889Q.Seq.d/                       1118   0.0
AFL620 (AFL620Q) /CSM/AF/AFL6-A/AFL620Q.Seq.d/                       1106   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329479) Dictyostelium discoideum cDNA clone:dda25j05, 5' ...  1168   0.0    1
(BJ415447) Dictyostelium discoideum cDNA clone:ddv22i16, 5' ...  1160   0.0    1
(BJ327674) Dictyostelium discoideum cDNA clone:dda21i07, 5' ...  1160   0.0    1
(BJ325807) Dictyostelium discoideum cDNA clone:dda2k10, 5' e...  1160   0.0    1
(BJ387828) Dictyostelium discoideum cDNA clone:dds5b11, 5' e...  1142   0.0    1
(BJ361037) Dictyostelium discoideum cDNA clone:ddc9c18, 5' e...  1126   0.0    1
(BJ410821) Dictyostelium discoideum cDNA clone:ddv2b01, 5' e...  1118   0.0    1
(BJ360879) Dictyostelium discoideum cDNA clone:ddc8j10, 5' e...  1118   0.0    1
(BJ329375) Dictyostelium discoideum cDNA clone:dda24b24, 5' ...  1116   0.0    1
(BJ324804) Dictyostelium discoideum cDNA clone:dda8h06, 5' e...  1100   0.0    1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   349   4e-95
AE017343_372(AE017343|pid:none) Cryptococcus neoformans var. neo...   143   4e-33
AY850189_1(AY850189|pid:none) Emericella nidulans UDP-glucose py...   140   4e-32
CR382127_82(CR382127|pid:none) Yarrowia lipolytica strain CLIB12...   139   6e-32
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   139   7e-32
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...   138   2e-31
BC060013_1(BC060013|pid:none) Xenopus laevis hypothetical protei...   138   2e-31
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   137   2e-31
AC114748_1(AC114748|pid:none) Homo sapiens BAC clone RP11-164A18...   137   2e-31
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   137   2e-31
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM321 is

5' end seq. ID AFM321F
5' end seq. 
>AFM321F.Seq
AATTATAACAATTATTAAAAACAAAAAGATATTTTGTTTTTTCTTGTTTTCTTTATTCAC
ATTACTATTTCAATTTAATTTTTTACAACCATCGTCATCAATAAAATCAAAATTGGAATT
TAAATCACCAATTGAAATTAAGATGATGAAGCCAGATTTAAATAGTCCATTACCACAATC
ACCACAACTTCAATCATTTGGAAGTAGATCATCAGATCTTGCAACCGAGGATTTATTTTT
GAAGAAATTGGAAGCAATCTCACAAACTGCACCAAATGAAACAGTAAAGAATGAATTTTT
AAACAAAGAAATACCATCTATCAACAAATTGTTTACCCGTTTCTTAAAGAATAGAAAGAA
AGTAATCGATTGGGATAAAATCAATCCACCACCAGCTGATATGGTTTTAAACTATAAAGA
TTTACCAGCAATCACCGAACAAAGAACTTCAGAACTCGCTTCAAAATTGGCTGTTTTGAA
ATTAAATGGAGGTTTAGGTACAACAATGGGTTGTACTGGTCCAAAGAGTGTTATTGAAGT
TAGAAGTGAAAAAACTTTCTTAGATTTAAGTGTTCAACAAATTAAAGAAATGAATGAAAG
ATATAATATTAAAGTACCATTAGTATTAATGAATTCATTTAATACTCATCAAGAAACTGG
TAAAATCATTCAAAXXXXXXXXXX
Length of 5' end seq. 684
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -