NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM307
Library AF
(Link to library)
Clone ID AFM307
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM307 (AFM307Q) /CSM/AF/AFM3-A/AFM307Q.Seq.d/
XXXXXXXXXXCGTCATGAAAGAAGATGCCATCGTTTGTAACATTGGTCACTTTGATTGTG
AAATCNATGTCGCTTGGTTAAACGCCAACGCCAAAAAAGATACCGTCAAACCACAAGTTG
ACCGTTACACCCTTGCCAACGGTGTCCACATCATCCTCNTAGCTGAAGGTCGTCTCGTCA
ATTTAGGTTGTGGTACTGGTCATCCATCTTTTGTTATGTCAAACTCTTTCTGTAACCAAA
CTTTAGCTCAAATCGCCCTCTGGACTAAAACTGAAGAATACCCATTAGGTGTCCACTTCT
TACCAAAGATTTTA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---VMKEDAIVCNIGHFDCEIXVAWLNANAKKDTVKPQVDRYTLANGVHIILXAEGRLVN
LGCGTGHPSFVMSNSFCNQTLAQIALWTKTEEYPLGVHFLPKIL
Translated Amino Acid sequence (All Frames) 
Frame A:
---VMKEDAIVCNIGHFDCEIXVAWLNANAKKDTVKPQVDRYTLANGVHIILXAEGRLVN
LGCGTGHPSFVMSNSFCNQTLAQIALWTKTEEYPLGVHFLPKIL


Frame B:
---s*kkmpsfvtlvtlivksmslg*tptpkkipsnhkltvtplptvstsss*lkvvssi
*vvvlvihlllcqtlsvtkl*lkspsglklknth*vstsyqrf


Frame C:
---herrchrl*hwsl*l*nxcrlvkrqrqkryrqtts*plhpcqrcphhpxs*rssrqf
rlwywssifcyvklfl*pnfssnrpld*n*ripircplltkdf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI527 (VSI527Q) /CSM/VS/VSI5-B/VSI527Q.Seq.d/                        591   e-168
VSE832 (VSE832Q) /CSM/VS/VSE8-B/VSE832Q.Seq.d/                        591   e-168
VSD654 (VSD654Q) /CSM/VS/VSD6-C/VSD654Q.Seq.d/                        591   e-168
VFO724 (VFO724Q) /CSM/VF/VFO7-A/VFO724Q.Seq.d/                        591   e-168
VFO720 (VFO720Q) /CSM/VF/VFO7-A/VFO720Q.Seq.d/                        591   e-168
VFM405 (VFM405Q) /CSM/VF/VFM4-A/VFM405Q.Seq.d/                        591   e-168
VFM288 (VFM288Q) /CSM/VF/VFM2-D/VFM288Q.Seq.d/                        591   e-168
VFM246 (VFM246Q) /CSM/VF/VFM2-B/VFM246Q.Seq.d/                        591   e-168
VFM138 (VFM138Q) /CSM/VF/VFM1-B/VFM138Q.Seq.d/                        591   e-168
VFL373 (VFL373Q) /CSM/VF/VFL3-D/VFL373Q.Seq.d/                        591   e-168
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284941) Dictyostelium discoideum gamete cDNA clone:FC-BQ1...   591   e-165  1
(AU284257) Dictyostelium discoideum gamete cDNA clone:FC-AE1...   591   e-165  1
(AU268832) Dictyostelium discoideum vegetative cDNA clone:VS...   591   e-165  1
(AU264378) Dictyostelium discoideum vegetative cDNA clone:VS...   591   e-165  1
(AU263412) Dictyostelium discoideum vegetative cDNA clone:VS...   591   e-165  1
(AU053544) Dictyostelium discoideum slug cDNA, clone SLI876.      591   e-165  1
(AU053472) Dictyostelium discoideum slug cDNA, clone SLI719.      591   e-165  1
(AU053407) Dictyostelium discoideum slug cDNA, clone SLI580.      591   e-165  1
(AU053288) Dictyostelium discoideum slug cDNA, clone SLI320.      591   e-165  1
(AU053279) Dictyostelium discoideum slug cDNA, clone SLI307.      591   e-165  1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27655(A27655;S06394) adenosylhomocysteinase (EC 3.3.1.1) - slim...   206   2e-52
X12523_1(X12523|pid:none) D. discoideum mRNA fragment for S-aden...   187   9e-47
AY278950_1(AY278950|pid:none) Branchiostoma belcheri tsingtaunes...   168   6e-41
(P27604) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   157   8e-38
(Q27580) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   156   2e-37
BC135905_1(BC135905|pid:none) Xenopus tropicalis S-adenosylhomoc...   156   2e-37
DQ443305_1(DQ443305|pid:none) Bombyx mori S-adenosyl-L-homocyste...   155   4e-37
(P51893) RecName: Full=Adenosylhomocysteinase A;          Short=...   155   5e-37
AB282637_1(AB282637|pid:none) Plutella xylostella pxAhh mRNA for...   154   7e-37
(O13639) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   154   1e-36
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM307 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM307Z
3' end seq. 
>AFM307Z.Seq
XXXXXXXXXXCGTCATGAAAGAAGATGCCATCGTTTGTAACATTGGTCACTTTGATTGTG
AAATCNATGTCGCTTGGTTAAACGCCAACGCCAAAAAAGATACCGTCAAACCACAAGTTG
ACCGTTACACCCTTGCCAACGGTGTCCACATCATCCTCNTAGCTGAAGGTCGTCTCGTCA
ATTTAGGTTGTGGTACTGGTCATCCATCTTTTGTTATGTCAAACTCTTTCTGTAACCAAA
CTTTAGCTCAAATCGCCCTCTGGACTAAAACTGAAGAATACCCATTAGGTGTCCACTTCT
TACCAAAGATTTTA
Length of 3' end seq. 314
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -