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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM302
Library AF
(Link to library)
Clone ID AFM302
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM302P
(Link to Original site)
Representative DNA sequence 
>AFM302 (AFM302Q) /CSM/AF/AFM3-A/AFM302Q.Seq.d/
AATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAG
TAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGG
TGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACA
ATCAATTCCACATGATCGTTATGTAATTXXXXXXXXXXAAGCATGTCATTCCGGTAGTGC
CTCTGGTATCGTTCCATCTTCATTCCGTATTCTTCGTCAAGTTTTAGATCGTGCTGAAAA
TCAATTAACTGGTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGA
TCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTA
CAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTAT
CCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTC
ATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCT
GATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTT
ACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTA
GAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGT
GAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATC
GTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATT
CCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTN
ATTAAATAAATAAACC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
IDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQ
LLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWD
EGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVI---

---ACHSGSASGIVPSSFRILRQVLDRAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILG
ETIYDEFSWYKIPLQSLKI*pn**stklgiqlfaspvlkvfhtlqmlvms*eltpplklv
fvyhhhskqlmhqly*kkfsklihhmvlklpskwinvlqvgihhkldqn*kkh*eklqif
slakttytwvkvvpshs*kcymtvsivnlsllvy*vqvqmlmvqmns*ifhlprny*vvl
fiy*mlipsxlnk*t
Translated Amino Acid sequence (All Frames) 
Frame A:
n**n*ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyrrsns
iiremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*cmg
*ritsiqsshqe*qtlwswwcr*wlfnicfnlcnqsiartinst*slcn---

---khvipvvplvsfhlhsvffvkf*ivlkin*lvksikdytlkfhniv*iksqnvlkf*
akpsmmnshgtkyhssh*rfnpiddqqnlvsnylhhrc*rysthfkcw*chenshhr*s*
csfttiiqss*cincikrnfrn*stiwc*sylqng*mcfrlgfttn*trirksirrsfks
flwqrprihg*rwfhpihenvt*pfqlsiyrywfirsrfkcswsk*ilrysicqeiiklc
ylfircsfqvx*ink

Frame B:
IDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQ
LLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWD
EGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVI---

---smsfr*clwyrsifipyssssfrsc*ksinw*sr*kitr*nsttsfrsnrkmc*nfr
rnhl**ilmvqnttpvtkdltqlminktwypticitgaegiphtsnagnvmrthttvkvs
vrlppsfkaadastvlkeifetnppygaevtfkmdkcasgwdspqtrpelekalgeasnl
ffgkdhvymgeggsipfmkmlhdrfncqfivtgllgpgsnahgpnefldipfakkllscv
iylldahskxik*in

Frame C:
likln*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqkkqfn
y*rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhslmhgm
kdyihtkqssritnsmvvvvqmmviqhllqslqskhcknnqfhmivm*---

---ACHSGSASGIVPSSFRILRQVLDRAENQLTGEVDKRLHVEIPQHRLDQIAKCAEILG
ETIYDEFSWYKIPLQSLKI*pn**stklgiqlfaspvlkvfhtlqmlvms*eltpplklv
fvyhhhskqlmhqly*kkfsklihhmvlklpskwinvlqvgihhkldqn*kkh*eklqif
slakttytwvkvvpshs*kcymtvsivnlsllvy*vqvqmlmvqmns*ifhlprny*vvl
fiy*mlipsxlnk*t
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM302 (AFM302Q) /CSM/AF/AFM3-A/AFM302Q.Seq.d/                       2351   0.0
AFO706 (AFO706Q) /CSM/AF/AFO7-A/AFO706Q.Seq.d/                       1483   0.0
AFL825 (AFL825Q) /CSM/AF/AFL8-B/AFL825Q.Seq.d/                       1483   0.0
VFC720 (VFC720Q) /CSM/VF/VFC7-A/VFC720Q.Seq.d/                       1475   0.0
AFC812 (AFC812Q) /CSM/AF/AFC8-A/AFC812Q.Seq.d/                       1475   0.0
AFH725 (AFH725Q) /CSM/AF/AFH7-B/AFH725Q.Seq.d/                       1467   0.0
VSD127 (VSD127Q) /CSM/VS/VSD1-B/VSD127Q.Seq.d/                       1461   0.0
CFJ404 (CFJ404Q) /CSM/CF/CFJ4-A/CFJ404Q.Seq.d/                       1455   0.0
AHL611 (AHL611Q) /CSM/AH/AHL6-A/AHL611Q.Seq.d/                       1455   0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/                       1441   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346782) Dictyostelium discoideum cDNA clone:dda25d01, 3' ...  1497   0.0    1
(BJ435532) Dictyostelium discoideum cDNA clone:ddv27m12, 3' ...  1094   0.0    2
(BJ435036) Dictyostelium discoideum cDNA clone:ddv25i22, 3' ...  1094   0.0    2
(BJ433712) Dictyostelium discoideum cDNA clone:ddv22p17, 3' ...  1094   0.0    2
(BJ432524) Dictyostelium discoideum cDNA clone:ddv18n24, 3' ...  1094   0.0    2
(BJ432087) Dictyostelium discoideum cDNA clone:ddv17g17, 3' ...  1094   0.0    2
(BJ398546) Dictyostelium discoideum cDNA clone:dds12j21, 3' ...  1094   0.0    2
(BJ397984) Dictyostelium discoideum cDNA clone:dds10c18, 3' ...  1094   0.0    2
(BJ376041) Dictyostelium discoideum cDNA clone:ddc21a04, 3' ...  1094   0.0    2
(BJ375536) Dictyostelium discoideum cDNA clone:ddc19h02, 3' ...  1094   0.0    3
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000733_1810(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...   174   7e-88
CP001020_1727(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...   174   2e-86
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple...   174   3e-85
AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2...   189   8e-60
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55...   192   3e-59
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp...   179   4e-59
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi...   187   7e-59
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr...   189   1e-58
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ...   182   7e-58
DQ384331_1(DQ384331|pid:none) Physarum polycephalum succinyl-dia...   189   2e-57
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM302 is

5' end seq. ID AFM302F
5' end seq. 
>AFM302F.Seq
AATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAG
TAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGG
TGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACA
ATCAATTCCACATGATCGTTATGTAATTXXXXXXXXXX
Length of 5' end seq. 518
3' end seq. ID AFM302Z
3' end seq. 
>AFM302Z.Seq
XXXXXXXXXXAAGCATGTCATTCCGGTAGTGCCTCTGGTATCGTTCCATCTTCATTCCGT
ATTCTTCGTCAAGTTTTAGATCGTGCTGAAAATCAATTAACTGGTGAAGTCGATAAAAGA
TTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTA
GGCGAAACCATCTATGATGAATTCTCATGGTACAAAATACCACTCCAGTCACTAAAGATT
TAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAG
GTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTA
GTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTT
TCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAG
GTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATC
TTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAA
TGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAA
ATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTG
TTATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAATAAACC
Length of 3' end seq. 768
Connected seq. ID AFM302P
Connected seq. 
>AFM302P.Seq
AATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAG
TAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAA
TCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCA
ATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAG
AATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGT
TAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGA
TGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGG
TGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACA
ATCAATTCCACATGATCGTTATGTAATT----------AAGCATGTCATTCCGGTAGTGC
CTCTGGTATCGTTCCATCTTCATTCCGTATTCTTCGTCAAGTTTTAGATCGTGCTGAAAA
TCAATTAACTGGTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGA
TCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTA
CAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTAT
CCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTC
ATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCT
GATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTT
ACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTA
GAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGT
GAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATC
GTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATT
CCATTTGCCAAGAAATTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTN
ATTAAATAAATAAACC
Length of connected seq. 1266
Full length Seq ID -
Full length Seq. -
Length of full length seq. -