VFD372
Library VF
(Link to library)
Clone ID VFD372
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06073-1
Original site URL
Representative seq. ID VFD372P
(Link to Original site)
Representative DNA sequence
>VFD372 (VFD372Q) /CSM/VF/VFD3-C/VFD372Q.Seq.d/
ATTTTCCACCCCATTTTTAAACAAATATTTTATAATATAATGTCAGACGAAAAAACACAA
TTAATTGAAGCTTTTTACAATTTCGATGGAGACTATGATGGTTTTGTTAGTGTAGAAGAA
TTTAGAGGAATTATTAGAGATGGTTTACCAATGACTGAAGCTGAGATCACAGAATTCTTT
GAAGCAGCTGATCCAAATAATACAGGTTTTATTGATTATAAAGCATTCGCTGCAATGTTA
TATTCAGTTGATGAATCATAAAAAAGAAAAAAAAAAXXXXXXXXXXATTTTCCACCCCAT
TTTTAAACAAATATTTTATAATATAATGTCAGACGAAAAAACACAATTAATTGAAGCTTT
TTACAATTTCGATGGAGACTATGATGGTTTTGTTAGTGTAGAAGAATTTAGAGGAATTAT
TAGAGATGGTTTACCAATGACTGAAGCTGAGATCACAGAATTCTTTGAAGCAGCNATCCA
AATAATACAGGTTTTATNATTATAAAGCATTCGCGCAATGTTAATTCAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
fstpflnkyfii*cqtkkhn*lklftismetmmvllv*knleellemvyq*LKLRSQNSL
KQLIQIIQVLLIIKHSLQCYIQLMNHKKEKK---

---IFHPIFKQIFYNIMSDEKTQLIEAFYNFDGDYDGFVSVEEFRGIIRDGLPMTEAEIT
EFFEAAIQIIQVLXL*siramliq


Translated Amino Acid sequence (All Frames)
Frame A:
ifhpifkqifynimsdektqlieafynfdgdydgfvsveefrgiirdglpmteaeiteff
eaadpnntgfidykafaamlysvdes*krkkk---

---IFHPIFKQIFYNIMSDEKTQLIEAFYNFDGDYDGFVSVEEFRGIIRDGLPMTEAEIT
EFFEAAIQIIQVLXL*siramliq

Frame B:
fstpflnkyfii*cqtkkhn*lklftismetmmvllv*knleellemvyq*LKLRSQNSL
KQLIQIIQVLLIIKHSLQCYIQLMNHKKEKK---

---fstpflnkyfii*cqtkkhn*lklftismetmmvllv*knleellemvyq*lklrsq
nslkqxsk*yrfyxykafaqc*fs

Frame C:
fpphf*tnil*ynvrrkntin*sflqfrwrl*wfc*crri*rny*rwftnd*s*dhril*
ss*sk*yrfy*l*sircnvifs**iikkkkk---

---fpphf*tnil*ynvrrkntin*sflqfrwrl*wfc*crri*rny*rwftnd*s*dhr
il*ssxpnntgfxiikhsrnvns

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD372 (VFD372Q) /CSM/VF/VFD3-C/VFD372Q.Seq.d/ 513 e-145
SSF342 (SSF342Q) /CSM/SS/SSF3-B/SSF342Q.Seq.d/ 246 3e-64
VHI212 (VHI212Q) /CSM/VH/VHI2-A/VHI212Q.Seq.d/ 40 0.033
AFG829 (AFG829Q) /CSM/AF/AFG8-B/AFG829Q.Seq.d/ 40 0.033
VHJ161 (VHJ161Q) /CSM/VH/VHJ1-C/VHJ161Q.Seq.d/ 34 2.1
VHG346 (VHG346Q) /CSM/VH/VHG3-B/VHG346Q.Seq.d/ 34 2.1
VHC814 (VHC814Q) /CSM/VH/VHC8-A/VHC814Q.Seq.d/ 34 2.1
VFH717 (VFH717Q) /CSM/VF/VFH7-A/VFH717Q.Seq.d/ 34 2.1
VFA731 (VFA731Q) /CSM/VF/VFA7-B/VFA731Q.Seq.d/ 34 2.1
SSL180 (SSL180Q) /CSM/SS/SSL1-D/SSL180Q.Seq.d/ 34 2.1

own update 2003.10.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH135566|BH135566.1 ENTMZ43TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 36 0.029 2
AZ689026|AZ689026.1 ENTIF41TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 36 0.029 2
AI330949|AI330949.1 fb05f08.x1 zebrafish fin day1 regeneration Danio rerio cDNA 3', mRNA sequence. 48 0.11 1
AF399011|AF399011.1 Pseudomonas phage phiKZ, complete genome. 40 0.18 5
AC135319|AC135319.18 Medicago truncatula clone mth2-6g4, WORKING DRAFT SEQUENCE, 2 ordered pieces. 42 0.19 2
AC146571|AC146571.1 Medicago truncatula clone mth2-104a2, WORKING DRAFT SEQUENCE, 5 unordered pieces. 42 0.21 2
AC119516|AC119516.6 Rattus norvegicus clone CH230-267L22, WORKING DRAFT SEQUENCE, 1 ordered piece. 40 0.23 2
AW507102|AW507102.1 EST00429 Plasmid Subtractive Library of Rat Cerebrum (stroke) Rattus norvegicus cDNA clone 1stG9, mRNA sequence. 34 0.28 2
BX088574|BX088574.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 38 0.32 2
AC112442|AC112442.4 Rattus norvegicus clone CH230-232E6, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces. 40 0.34 4
dna update 2003. 9.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU868624_1(EU868624|pid:none) Synthetic construct calcium indica... 38 0.003
FB335003_1(FB335003|pid:none) Sequence 2529 from Patent WO200711... 33 0.006
AM910988_122(AM910988|pid:none) Plasmodium knowlesi strain H chr... 32 0.029
AC129718_13(AC129718|pid:none) Oryza sativa (japonica cultivar-g... 40 0.036
EU247212_1(EU247212|pid:none) Lycosa singoriensis clone LSsin179... 35 0.038
BT037017_1(BT037017|pid:none) Zea mays full-length cDNA clone ZM... 30 0.046
AJ699161_1(AJ699161|pid:none) Nicotiana plumbaginifolia mRNA for... 40 0.047
FB334898_1(FB334898|pid:none) Sequence 2424 from Patent WO200711... 39 0.061
FB334860_1(FB334860|pid:none) Sequence 2386 from Patent WO200711... 39 0.061
AJ251808_1(AJ251808|pid:none) Lotus japonicus mRNA for calcium-b... 39 0.080
protein update 2009. 6.18
PSORT

psg: 0.93 gvh: 0.46 alm: 0.36 top: 0.50 tms: 0.00 mit: 0.32 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: mitochondrial
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for VFD372 is cyt

5' end seq. ID VFD372F
5' end seq.
>VFD372F.Seq
ATTTTCCACCCCATTTTTAAACAAATATTTTATAATATAATGTCAGACGAAAAAACACAA
TTAATTGAAGCTTTTTACAATTTCGATGGAGACTATGATGGTTTTGTTAGTGTAGAAGAA
TTTAGAGGAATTATTAGAGATGGTTTACCAATGACTGAAGCTGAGATCACAGAATTCTTT
GAAGCAGCTGATCCAAATAATACAGGTTTTATTGATTATAAAGCATTCGCTGCAATGTTA
TATTCAGTTGATGAATCATAAAAAAGAAAAAAAAAA----------
Length of 5' end seq. 276
3' end seq. ID VFD372Z
3' end seq.
>VFD372Z.Seq
----------ATTTTCCACCCCATTTTTAAACAAATATTTTATAATATAATGTCAGACGA
AAAAACACAATTAATTGAAGCTTTTTACAATTTCGATGGAGACTATGATGGTTTTGTTAG
TGTAGAAGAATTTAGAGGAATTATTAGAGATGGTTTACCAATGACTGAAGCTGAGATCAC
AGAATTCTTTGAAGCAGCNATCCAAATAATACAGGTTTTATNATTATAAAGCATTCGCGC
AATGTTAATTCAGT
Length of 3' end seq. 244
Connected seq. ID VFD372P
Connected seq.
>VFD372P.Seq
ATTTTCCACCCCATTTTTAAACAAATATTTTATAATATAATGTCAGACGAAAAAACACAA
TTAATTGAAGCTTTTTACAATTTCGATGGAGACTATGATGGTTTTGTTAGTGTAGAAGAA
TTTAGAGGAATTATTAGAGATGGTTTACCAATGACTGAAGCTGAGATCACAGAATTCTTT
GAAGCAGCTGATCCAAATAATACAGGTTTTATTGATTATAAAGCATTCGCTGCAATGTTA
TATTCAGTTGATGAATCATAAAAAAGAAAAAAAAAA----------ATTTTCCACCCCAT
TTTTAAACAAATATTTTATAATATAATGTCAGACGAAAAAACACAATTAATTGAAGCTTT
TTACAATTTCGATGGAGACTATGATGGTTTTGTTAGTGTAGAAGAATTTAGAGGAATTAT
TAGAGATGGTTTACCAATGACTGAAGCTGAGATCACAGAATTCTTTGAAGCAGCNATCCA
AATAATACAGGTTTTATNATTATAAAGCATTCGCGCAATGTTAATTCAGT
Length of connected seq. 520
Full length Seq ID -
Full length Seq. -
Length of full length seq. -