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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM293
Library AF
(Link to library)
Clone ID AFM293
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM293 (AFM293Q) /CSM/AF/AFM2-D/AFM293Q.Seq.d/
XXXXXXXXXXGTTTCACTATCTGAACAAAATTTAGTTGATTGCTCTGGTCCAGAAGAAAA
CTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAACAAGGG
TATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAA
TAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGAT
TTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAA
TAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATT
GGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGT
ATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTC
TGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTC
ATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---SLSEQNLVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNK
SDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELD
HGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSW
GTSWGIKGYILMSK
Translated Amino Acid sequence (All Frames) 
Frame A:
---fhylnki*lialvqkktlvvmvv**imhliislktrvltlkvvihillklvqhvysi
nlilvqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnw
imvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkih
gvphgv*kvtf*cqr


Frame B:
---fti*tkfs*llwsrrklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*
i*ywcnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*ig
swcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfm
gylmgykrlhfnvkg


Frame C:
---SLSEQNLVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNK
SDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELD
HGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSW
GTSWGIKGYILMSK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK574 (SFK574Q) /CSM/SF/SFK5-D/SFK574Q.Seq.d/                       1146   0.0
AHH295 (AHH295Q) /CSM/AH/AHH2-D/AHH295Q.Seq.d/                       1146   0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/                       1146   0.0
AFO194 (AFO194Q) /CSM/AF/AFO1-D/AFO194Q.Seq.d/                       1146   0.0
AFM293 (AFM293Q) /CSM/AF/AFM2-D/AFM293Q.Seq.d/                       1146   0.0
AFK396 (AFK396Q) /CSM/AF/AFK3-D/AFK396Q.Seq.d/                       1146   0.0
AFK395 (AFK395Q) /CSM/AF/AFK3-D/AFK395Q.Seq.d/                       1146   0.0
AFI737 (AFI737Q) /CSM/AF/AFI7-B/AFI737Q.Seq.d/                       1146   0.0
AFI111 (AFI111Q) /CSM/AF/AFI1-A/AFI111Q.Seq.d/                       1146   0.0
AFG885 (AFG885Q) /CSM/AF/AFG8-D/AFG885Q.Seq.d/                       1146   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1144   0.0    1
(BJ401286) Dictyostelium discoideum cDNA clone:dds22c19, 3' ...  1144   0.0    1
(BJ352181) Dictyostelium discoideum cDNA clone:dda45m24, 3' ...  1144   0.0    1
(BJ347019) Dictyostelium discoideum cDNA clone:dda25i24, 3' ...  1144   0.0    1
(BJ346339) Dictyostelium discoideum cDNA clone:dda30j13, 3' ...  1144   0.0    1
(BJ346036) Dictyostelium discoideum cDNA clone:dda29k23, 3' ...  1144   0.0    1
(BJ345208) Dictyostelium discoideum cDNA clone:dda21p23, 3' ...  1144   0.0    1
(BJ345198) Dictyostelium discoideum cDNA clone:dda21n23, 3' ...  1144   0.0    1
(BJ344083) Dictyostelium discoideum cDNA clone:dda18j09, 3' ...  1144   0.0    1
(BJ343748) Dictyostelium discoideum cDNA clone:dda17e03, 3' ...  1144   0.0    1
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   381   e-105
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   206   4e-52
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   206   4e-52
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   193   2e-48
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   191   1e-47
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   191   2e-47
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   187   1e-46
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,...   186   4e-46
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...   184   2e-45
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   183   3e-45
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM293 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM293Z
3' end seq. 
>AFM293Z.Seq
XXXXXXXXXXGTTTCACTATCTGAACAAAATTTAGTTGATTGCTCTGGTCCAGAAGAAAA
CTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAACAAGGG
TATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAA
TAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGAT
TTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAA
TAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATT
GGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGT
ATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTC
TGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTC
ATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGA
Length of 3' end seq. 588
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -