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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD272
Library VF
(Link to library)
Clone ID VFD272
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12315-1
Original site URL
Representative seq. ID VFD272Z
(Link to Original site)
Representative DNA sequence 
>VFD272 (VFD272Q) /CSM/VF/VFD2-C/VFD272Q.Seq.d/
XXXXXXXXXXGGTACAAATGGTAGTCAATTCTCTATTACTACAATTAGTACACCACATTT
AGATAATAAACATGTTGTATTTGGTAAAGTTATTAAAGGAATGAGTGTTGTTAGAGAAAT
TGAAAGTCAACCAACAGGAGCAAATGATAAACCAATTAAAGATTGTATTATTATGGATTG
TGGTGAATTAAAAGAAGGTGAAGATGACGGTGTACCAGAGAAAACTGGTGATGACAAATG
GGAAGATTATCCACAAGATGATAATGTTGAAGGTAATGAAGCAAACTTAAAAGTTGGTGA
AGCCATTAAAAACATTGGTAATGATTATTTTAAACAAGGTAAATCATTAGAAGCCATAGC
CAAATACAATAAAGCATTAAGATATTTAGATTGTTGTAGTAATATCGATGGTTTAAAGAA
TGTTCAAACCATTTGTTATAATAATATGTCACAATGTTATTTAAAGGAAAAAAAGGTTCC
AATGCTTTGGTAGCTGCAAAAAAAGCATTAGAATTATCACCAAATGATATTAAAGCACTC
TTTAGAAAAGCTAAAGCTTTATCTTTAATGGAGGAATATGATGAAGCTATCAAAGATTTC
CAAAAAATCATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---TNGSQFSITTISTPHLDNKHVVFGKVIKGMSVVREIESQPTGANDKPIKDCIIMDCG
ELKEGEDDGVPEKTGDDKWEDYPQDDNVEGNEANLKVGEAIKNIGNDYFKQGKSLEAIAK
YNKALRYLDCCSNIDGLKNVQTICYNNMSQCYLKEKKVPMLW*lqkkh*nyhqmilkhsl
eklklyl*wrnmmklskiskks
Translated Amino Acid sequence (All Frames) 
Frame A:
---vqmvvnslllqlvhhi*iinmlylvkllke*vlleklkvnqqeqminqlkivllwiv
vn*kkvkmtvyqrklvmtngkiihkmimlkvmkqt*klvkplktlvmiilnkvnh*kp*p
ntikh*di*ivvvismv*rmfkpfviiichnvi*rkkrfqcfgsckksiriitk*y*stl
*ks*sfifnggi**syqrfpknh


Frame B:
---ykw*silyyyn*yttfr**tcciw*sy*rnecc*rn*kstnrsk**tn*rlyyyglw
*ikrr*r*rctrenw**qmgrlstr**c*r**sklksw*sh*khw**lf*tr*iirshsq
iq*sikifrll**yrwfkecsnhll**yvtmlfkgkkgsnalvaakkalelspndikalf
rkakalslmeeydeaikdfqkii


Frame C:
---TNGSQFSITTISTPHLDNKHVVFGKVIKGMSVVREIESQPTGANDKPIKDCIIMDCG
ELKEGEDDGVPEKTGDDKWEDYPQDDNVEGNEANLKVGEAIKNIGNDYFKQGKSLEAIAK
YNKALRYLDCCSNIDGLKNVQTICYNNMSQCYLKEKKVPMLW*lqkkh*nyhqmilkhsl
eklklyl*wrnmmklskiskks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD272 (VFD272Q) /CSM/VF/VFD2-C/VFD272Q.Seq.d/                       1110   0.0
VFC858 (VFC858Q) /CSM/VF/VFC8-C/VFC858Q.Seq.d/                       1035   0.0
CHA143 (CHA143Q) /CSM/CH/CHA1-B/CHA143Q.Seq.d/                       1035   0.0
VFF758 (VFF758Q) /CSM/VF/VFF7-C/VFF758Q.Seq.d/                        963   0.0
VSA209 (VSA209Q) /CSM/VS/VSA2-A/VSA209Q.Seq.d/                        680   0.0
CHB890 (CHB890Q) /CSM/CH/CHB8-D/CHB890Q.Seq.d/                        343   2e-93
SLK849 (SLK849Q) /CSM/SL/SLK8-C/SLK849Q.Seq.d/                        172   4e-42
VFK629 (VFK629Q) /CSM/VF/VFK6-B/VFK629Q.Seq.d/                        129   5e-29
AFO662 (AFO662Q) /CSM/AF/AFO6-C/AFO662Q.Seq.d/                        105   8e-22
VHD705 (VHD705Q) /CSM/VH/VHD7-A/VHD705Q.Seq.d/                         46   6e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI816026|BI816026.1 PfESToaa35e05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum 3D7 cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  1e-07  2
BQ451076|BQ451076.1 PfESToab03e06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  1e-07  2
BQ577318|BQ577318.1 PfESToab17e07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  1e-07  2
BI670625|BI670625.1 PfESToaa02c05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  1e-07  2
BU498204|BU498204.1 PfESToab94b07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  1e-07  2
BU495133|BU495133.1 PfESToab84g04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  1e-07  2
BU497865|BU497865.1 PfESToab89d06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  2e-07  2
U33869|U33869.1 Plasmodium falciparum cyclophilin mRNA, complete cds.    62  2e-07  2
BQ597053|BQ597053.1 PfESToab34a12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  9e-06  1
BI814491|BI814491.1 PfESToaa23d10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence.    62  9e-06  1
dna update 2003. 9.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB823335_1(FB823335|pid:none) Sequence 42608 from Patent WO20080...   143   1e-35
BC071388_1(BC071388|pid:none) Danio rerio peptidylprolyl isomera...   137   4e-35
(Q6DGG0) RecName: Full=40 kDa peptidyl-prolyl cis-trans isomeras...   128   3e-34
(P0C1I1) RecName: Full=Peptidyl-prolyl cis-trans isomerase D;   ...   139   9e-34
BT043603_1(BT043603|pid:none) Salmo salar clone HM4_3222 peptidy...   127   4e-33
L11668_1(L11668|pid:none) Cow cyclophilin-40 mRNA, partial cds.       126   4e-33
(Q08752) RecName: Full=40 kDa peptidyl-prolyl cis-trans isomeras...   124   8e-33
AY893314_1(AY893314|pid:none) Synthetic construct Homo sapiens c...   124   8e-33
BT073249_1(BT073249|pid:none) Oncorhynchus mykiss clone omyk-evn...   125   3e-32
DQ216381_1(DQ216381|pid:none) Taeniopygia guttata clone 0058P000...   128   5e-32
protein update 2009. 6.18
PSORT 

 psg: 0.91  gvh: 0.45  alm: 0.47  top: 0.67  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFD272 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFD272Z
3' end seq. 
>VFD272Z.Seq
----------GGTACAAATGGTAGTCAATTCTCTATTACTACAATTAGTACACCACATTT
AGATAATAAACATGTTGTATTTGGTAAAGTTATTAAAGGAATGAGTGTTGTTAGAGAAAT
TGAAAGTCAACCAACAGGAGCAAATGATAAACCAATTAAAGATTGTATTATTATGGATTG
TGGTGAATTAAAAGAAGGTGAAGATGACGGTGTACCAGAGAAAACTGGTGATGACAAATG
GGAAGATTATCCACAAGATGATAATGTTGAAGGTAATGAAGCAAACTTAAAAGTTGGTGA
AGCCATTAAAAACATTGGTAATGATTATTTTAAACAAGGTAAATCATTAGAAGCCATAGC
CAAATACAATAAAGCATTAAGATATTTAGATTGTTGTAGTAATATCGATGGTTTAAAGAA
TGTTCAAACCATTTGTTATAATAATATGTCACAATGTTATTTAAAGGAAAAAAAGGTTCC
AATGCTTTGGTAGCTGCAAAAAAAGCATTAGAATTATCACCAAATGATATTAAAGCACTC
TTTAGAAAAGCTAAAGCTTTATCTTTAATGGAGGAATATGATGAAGCTATCAAAGATTTC
CAAAAAATCATT
Length of 3' end seq. 602
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -