VFD258 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFD258
Library	VF (Link to library)
Clone ID	VFD258 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16185-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFD2-C/VFD258Q.Seq.d/
Representative seq. ID	VFD258P (Link to Original site)
Representative DNA sequence	>VFD258 (VFD258Q) /CSM/VF/VFD2-C/VFD258Q.Seq.d/ AAATCATTGTCGAATTTTCATTTTTAATTGTTGTGATAAATTTATATTTAAATAATGTCA AACAATTTATTTGGTACAGGTTCATCAACTTCATCATCATTATTTGGTTCAACACCTTCA GCAGGTGGATTATTTGGTGGTGGTAGTTCAACAACACCAGCAACAGGCGGTGGTGGTTTA TTTGGAGGTGCCTCAACAACACCAGCAACAGGCGGCGGTTTATTTGGAGGTGCCTCAACA ACACCAGCAACAGGTGGTGGTTTATTTGGAGGTGCCTCAACAACACCAGCAACAGGTGGT GGTGGTTTATTTGGAGGTAGTAGCACTACAGCACCAGCAACAGGTGGTGGTGGTTTATTT GGTGGTTCTACAACAACTGCACCAGCAACTACTGGAGGATTATTTGGAGGTAGTAGCACT ACAGCACCATCAACAACAACTGGTGGATTATTCGGAGGTTCTTCAACAACTACACCATCA ATAACAACAACAGGAGGATTATTTGGAGGTGCTTCAACAACTGCACCATCAACAACAACA GGTGGATTATTTGGAGCAACTACACCAGCAACTACAGCAACAACAACAACAGGTGGATTA TTTGGCGGATCTACAACCACACCATCATTAACAAGTGGTGGAGGTTTATTTGGAGCAACT ACACCAGCAGCTACAACAACAACAACATCCTCAGCTATACCATCATTAACTAGCGGCGGA GGNTTATTTGGTGGATCTACAACTACACCATNATTAACTAGTGGTGGATTATTTGGAGCA ACTACACCAGCAGCTACAACAACTACAXXXXXXXXXXGGTGGATTATTTGGAGCAANTAC ACCAGCAGNGTACAGCNTCANNNACAACAGGTGGATTATTTGGCGGATNTACAGNNNANN NNATCATTAACAAGTGGTGGAGGTTTATTTGGAGCAACTACACCAGCAGCTACAACAACA ACNACATCNTCAGNTATNCNATCATTANCTANCGGCGGAGGTTTATTTGGTGGATCTACN NGTACACCATCATTAACTAGTGGTGGATTATTTGGAGCAACTACNCCAGCAGCTACAACA ACTACATCTANNNGTACACCATCATTAACTAGTGGTGGATTATTTGGAGNAACNANNNCA TCAACTACAGNAGGATTATTTGGAGCNTNNACAACAACANCAACAACACCATCAACTACA TCTACANCNACTCCATCNGCAACTACAGGCGGATTATTCGGTGCAANTACANCAGCAACA TNGNCAACTTCAGGAGGATTATTTGGAGCATCGNCGNCNACNNCATCANCCACAGGAGGA TTATTTGG
sequence update	2001. 6. 1
Translated Amino Acid sequence	kslsnfhflliyiIMSNNLFGTGSSTSSSLFGSTPSAGGLFGGGSSTTPATGGGGL FGGASTTPATGGGLFGGASTTPATGGGLFGGASTTPATGGGGLFGGSSTTAPATGGGGLF GGSTTTAPATTGGLFGGSSTTAPSTTTGGLFGGSSTTTPSITTTGGLFGGASTTAPSTTT GGLFGATTPATTATTTTGGLFGGSTTTPSLTSGGGLFGATTPAATTTTTSSAIPSLTSGG GLFGGSTTTPXLTSGGLFGATTPAATTTT--- ---WIIWSXYTSXVQXXXQQVDYLADXQXXXSLTSGGGLFGATTPAATTTTTSSXXXSLX XGGGLFGGSTXTPSLTSGGLFGATTPAATTTTSXXTPSLTSGGLFGXTXXSTTXGLFGAX TTTXTTPSTTSTXTPSATTGGLFGAXTXATXXTSGGLFGASXXTXSXTGGLF
Translated Amino Acid sequence (All Frames)	Frame A: kslsnfhflliyiIMSNNLFGTGSSTSSSLFGSTPSAGGLFGGGSSTTPATGGGGL FGGASTTPATGGGLFGGASTTPATGGGLFGGASTTPATGGGGLFGGSSTTAPATGGGGLF GGSTTTAPATTGGLFGGSSTTAPSTTTGGLFGGSSTTTPSITTTGGLFGGASTTAPSTTT GGLFGATTPATTATTTTGGLFGGSTTTPSLTSGGGLFGATTPAATTTTTSSAIPSLTSGG GLFGGSTTTPXLTSGGLFGATTPAATTTT--- ---gglfgaxtpaxysxxxnrwiiwrxyxxxxhqvvevyleqlhqqlqqqxhxqxxxhx lxaevylvdlxvhhhlvvdyleqlxqqlqqlhlxvhhhlvvdylexxxhqlqxdylex xqqxqqhhqlhlxxlhxqlqadysvqxxqqhxqlqedylehrrxxhxpqedyl Frame B: nhcrififnccdkfifkcqtiylvqvhqlhhhylvqhlqqvdylvvvvqqhqqqavvvy levpqqhqqqaavylevpqqhqqqvvvylevpqqhqqqvvvvylevvalqhqqqvvvvyl vvlqqlhqqlledylevvalqhhqqqlvdysevlqqlhhqqqqedylevlqqlhhqqqq vdyleqlhqqlqqqqqqvdyladlqphhhqvvevyleqlhqqlqqqqhpqlyhhlaae xylvdlqlhhxlvvdyleqlhqqlqql--- ---vdyleqxhqqxtasxttgglfggxtxxxiinkwwrfiwsnytssynnnxixxyxiix xrrrfiwwiyxytiinwwiiwsnyxssynnyixxytiinwwiiwxnxxinyxriiwsx xnnxnntinyiyxxsixnyrriircxyxsnxxnfrriiwsixxxxixhrriiw Frame C: iivefsflivvinlylnnvkqfiwyrfinfiiiiwfntfsrwiiwwwfnntsnrrwwfi wrclnntsnrrrfiwrclnntsnrwwfiwrclnntsnrwwwfiwrhystsnrwwwfiw wfynnctsnywriiwrhystinnnwwiirrffnnytinnnnrriiwrcfnnctinnnr wiiwsnytsnysnnnnrwiiwriynhtiinkwwrfiwsnytssynnnnilsytiinrrr xiwwiynytxin*wwiiwsnytssynny--- ---WIIWSXYTSXVQXXXQQVDYLADXQXXXSLTSGGGLFGATTPAATTTTTSSXXXSLX XGGGLFGGSTXTPSLTSGGLFGATTPAATTTTSXXTPSLTSGGLFGXTXXSTTXGLFGAX TTTXTTPSTTSTXTPSATTGGLFGAXTXATXXTSGGLFGASXXTXSXTGGLF
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFD258 (VFD258Q) /CSM/VF/VFD2-C/VFD258Q.Seq.d/ 2264 0.0 AFL696 (AFL696Q) /CSM/AF/AFL6-D/AFL696Q.Seq.d/ 1507 0.0 VHN771 (VHN771Q) /CSM/VH/VHN7-C/VHN771Q.Seq.d/ 1459 0.0 VHN786 (VHN786Q) /CSM/VH/VHN7-D/VHN786Q.Seq.d/ 1449 0.0 CHN438 (CHN438Q) /CSM/CH/CHN4-B/CHN438Q.Seq.d/ 1415 0.0 CFI338 (CFI338Q) /CSM/CF/CFI3-B/CFI338Q.Seq.d/ 1409 0.0 VHE183 (VHE183Q) /CSM/VH/VHE1-D/VHE183Q.Seq.d/ 1390 0.0 VHH340 (VHH340Q) /CSM/VH/VHH3-B/VHH340Q.Seq.d/ 1382 0.0 VHN586 (VHN586Q) /CSM/VH/VHN5-D/VHN586Q.Seq.d/ 1374 0.0 AFC606 (AFC606Q) /CSM/AF/AFC6-A/AFC606Q.Seq.d/ 1334 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1588 0.0 15 AL440760\|AL440760.1 T7 end of clone BD0AA014F02 of library BD0AA from strain CBS 94 of Candida tropicalis. 40 5e-23 9 AX488858\|AX488858.1 Sequence 6158 from Patent WO02053728. 42 3e-20 8 AL439660\|AL439660.1 T3 end of clone BD0AA007A06 of library BD0AA from strain CBS 94 of Candida tropicalis. 36 4e-17 8 AL439958\|AL439958.1 T7 end of clone BD0AA009A10 of library BD0AA from strain CBS 94 of Candida tropicalis. 38 4e-16 8 BZ260408\|BZ260408.1 CH230-335G9.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-335G9, DNA sequence. 44 7e-16 7 CB832769\|CB832769.1 USDA-FP_100568 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-08_C04 5', mRNA sequence. 36 9e-13 6 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 48 3e-12 5 BI176637\|BI176637.1 EST517582 cSTE Solanum tuberosum cDNA clone cSTE5K22 5' sequence, mRNA sequence. 36 3e-11 5 BZ284533\|BZ284533.1 CH230-385E7.TVB CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-385E7, DNA sequence. 40 4e-11 5
dna update	2003. 9.14
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AM446570_1(AM446570\|pid:none) Vitis vinifera contig VV78X034573.... 46 0.003 AM494940_72(AM494940\|pid:none) Leishmania braziliensis chromosom... 37 2.1 EU976048_1(EU976048\|pid:none) Zea mays clone 509554 hypothetical... 36 2.7 CP000124_1093(CP000124\|pid:none) Burkholderia pseudomallei 1710b... 35 4.6 CP000570_946(CP000570\|pid:none) Burkholderia pseudomallei 668 ch... 35 4.6 EF203419_1(EF203419\|pid:none) Strongylocentrotus purpuratus rece... 35 7.9
protein update	2009. 2. 9
PSORT	psg: 0.75 gvh: 0.52 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 24.0 %: cytoplasmic 12.0 %: cytoskeletal 12.0 %: mitochondrial 4.0 %: endoplasmic reticulum >> prediction for VFD258 is nuc
5' end seq. ID	VFD258F
5' end seq.	>VFD258F.Seq AAATCATTGTCGAATTTTCATTTTTAATTGTTGTGATAAATTTATATTTAAATAATGTCA AACAATTTATTTGGTACAGGTTCATCAACTTCATCATCATTATTTGGTTCAACACCTTCA GCAGGTGGATTATTTGGTGGTGGTAGTTCAACAACACCAGCAACAGGCGGTGGTGGTTTA TTTGGAGGTGCCTCAACAACACCAGCAACAGGCGGCGGTTTATTTGGAGGTGCCTCAACA ACACCAGCAACAGGTGGTGGTTTATTTGGAGGTGCCTCAACAACACCAGCAACAGGTGGT GGTGGTTTATTTGGAGGTAGTAGCACTACAGCACCAGCAACAGGTGGTGGTGGTTTATTT GGTGGTTCTACAACAACTGCACCAGCAACTACTGGAGGATTATTTGGAGGTAGTAGCACT ACAGCACCATCAACAACAACTGGTGGATTATTCGGAGGTTCTTCAACAACTACACCATCA ATAACAACAACAGGAGGATTATTTGGAGGTGCTTCAACAACTGCACCATCAACAACAACA GGTGGATTATTTGGAGCAACTACACCAGCAACTACAGCAACAACAACAACAGGTGGATTA TTTGGCGGATCTACAACCACACCATCATTAACAAGTGGTGGAGGTTTATTTGGAGCAACT ACACCAGCAGCTACAACAACAACAACATCCTCAGCTATACCATCATTAACTAGCGGCGGA GGNTTATTTGGTGGATCTACAACTACACCATNATTAACTAGTGGTGGATTATTTGGAGCA ACTACACCAGCAGCTACAACAACTACA----------
Length of 5' end seq.	807
3' end seq. ID	VFD258Z
3' end seq.	>VFD258Z.Seq ----------GGTGGATTATTTGGAGCAANTACACCAGCAGNGTACAGCNTCANNNACAA CAGGTGGATTATTTGGCGGATNTACAGNNNANNNNATCATTAACAAGTGGTGGAGGTTTA TTTGGAGCAACTACACCAGCAGCTACAACAACAACNACATCNTCAGNTATNCNATCATTA NCTANCGGCGGAGGTTTATTTGGTGGATCTACNNGTACACCATCATTAACTAGTGGTGGA TTATTTGGAGCAACTACNCCAGCAGCTACAACAACTACATCTANNNGTACACCATCATTA ACTAGTGGTGGATTATTTGGAGNAACNANNNCATCAACTACAGNAGGATTATTTGGAGCN TNNACAACAACANCAACAACACCATCAACTACATCTACANCNACTCCATCNGCAACTACA GGCGGATTATTCGGTGCAANTACANCAGCAACATNGNCAACTTCAGGAGGATTATTTGGA GCATCGNCGNCNACNNCATCANCCACAGGAGGATTATTTGG
Length of 3' end seq.	511
Connected seq. ID	VFD258P
Connected seq.	>VFD258P.Seq AAATCATTGTCGAATTTTCATTTTTAATTGTTGTGATAAATTTATATTTAAATAATGTCA AACAATTTATTTGGTACAGGTTCATCAACTTCATCATCATTATTTGGTTCAACACCTTCA GCAGGTGGATTATTTGGTGGTGGTAGTTCAACAACACCAGCAACAGGCGGTGGTGGTTTA TTTGGAGGTGCCTCAACAACACCAGCAACAGGCGGCGGTTTATTTGGAGGTGCCTCAACA ACACCAGCAACAGGTGGTGGTTTATTTGGAGGTGCCTCAACAACACCAGCAACAGGTGGT GGTGGTTTATTTGGAGGTAGTAGCACTACAGCACCAGCAACAGGTGGTGGTGGTTTATTT GGTGGTTCTACAACAACTGCACCAGCAACTACTGGAGGATTATTTGGAGGTAGTAGCACT ACAGCACCATCAACAACAACTGGTGGATTATTCGGAGGTTCTTCAACAACTACACCATCA ATAACAACAACAGGAGGATTATTTGGAGGTGCTTCAACAACTGCACCATCAACAACAACA GGTGGATTATTTGGAGCAACTACACCAGCAACTACAGCAACAACAACAACAGGTGGATTA TTTGGCGGATCTACAACCACACCATCATTAACAAGTGGTGGAGGTTTATTTGGAGCAACT ACACCAGCAGCTACAACAACAACAACATCCTCAGCTATACCATCATTAACTAGCGGCGGA GGNTTATTTGGTGGATCTACAACTACACCATNATTAACTAGTGGTGGATTATTTGGAGCA ACTACACCAGCAGCTACAACAACTACA----------GGTGGATTATTTGGAGCAANTAC ACCAGCAGNGTACAGCNTCANNNACAACAGGTGGATTATTTGGCGGATNTACAGNNNANN NNATCATTAACAAGTGGTGGAGGTTTATTTGGAGCAACTACACCAGCAGCTACAACAACA ACNACATCNTCAGNTATNCNATCATTANCTANCGGCGGAGGTTTATTTGGTGGATCTACN NGTACACCATCATTAACTAGTGGTGGATTATTTGGAGCAACTACNCCAGCAGCTACAACA ACTACATCTANNNGTACACCATCATTAACTAGTGGTGGATTATTTGGAGNAACNANNNCA TCAACTACAGNAGGATTATTTGGAGCNTNNACAACAACANCAACAACACCATCAACTACA TCTACANCNACTCCATCNGCAACTACAGGCGGATTATTCGGTGCAANTACANCAGCAACA TNGNCAACTTCAGGAGGATTATTTGGAGCATCGNCGNCNACNNCATCANCCACAGGAGGA TTATTTGG
Length of connected seq.	1318
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas