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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD243
Library VF
(Link to library)
Clone ID VFD243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID VFD243Z
(Link to Original site)
Representative DNA sequence 
>VFD243 (VFD243Q) /CSM/VF/VFD2-B/VFD243Q.Seq.d/
XXXXXXXXXXGCCCAAAATATTTTATTATCANAAGCCTCAAAAATTCAACCAACCTTATC
AAACAAAGTTGTTGANATNGNAGNTGTTTTACTCGCTCAAAATCAANACTCAACCATCAA
ACAATTNCAATNTGNTGTTGAAAAATCATCATTCGNTTCTTTNTTTACTGCTGNTTNTGN
TCATGAATTTGATGATCAAGCTACTTTCAACAAACAAGTTGAACAATCNTTTTTACAANA
TGGNTCATCATCNTTAAATTCAGCCAGCCNACAAGGNAGTGGATCAAGTAGNTCAGGATC
NAATGAACCNACTAAACNACNTTTCNCNTATGNTACNGGGCCNGNCCCTTCTGCNTATTT
GATTATCNCNATCNTATTAGCCCTTTTANTCNCTGGGATTTGNTG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---QNILLSXASKIQPTLSNKVVXXXXVLLAQNQXSTIKQXQXXVEKSSFXSXFTAXXXH
EFDDQATFNKQVEQSFLQXGSSSLNSASXQGSGSSXSGSNEPTKXXFXYXTGPXPSAYLI
IXIXLALLXXGIX
Translated Amino Acid sequence (All Frames) 
Frame A:
---pkifyyxkpqkfnqpyqtkllxxxxfyslkixtqpsnnxnxxlknhhsxlxlllxxx
mnlmikllstnklnnxfyxmxhhx*iqpaxkxvdqvxqdxmnxlnxxsxmxxgxxllxi*
lsxsy*pfxslgfx


Frame B:
---pkyfiixslknstnlikqsc*xxxcftrsksxlnhqtixxxc*kiiirffxycxxxs
*i**ssyfqqts*tixftxwxiixkfsqptrxwik*xrix*tx*ttfxxxyxaxpfcxfd
yxxxispfxxwdlx


Frame C:
---QNILLSXASKIQPTLSNKVVXXXXVLLAQNQXSTIKQXQXXVEKSSFXSXFTAXXXH
EFDDQATFNKQVEQSFLQXGSSSLNSASXQGSGSSXSGSNEPTKXXFXYXTGPXPSAYLI
IXIXLALLXXGIX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD243 (VFD243Q) /CSM/VF/VFD2-B/VFD243Q.Seq.d/                        557   e-158
VFI608 (VFI608Q) /CSM/VF/VFI6-A/VFI608Q.Seq.d/                        525   e-148
VSI650 (VSI650Q) /CSM/VS/VSI6-C/VSI650Q.Seq.d/                        517   e-146
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                        517   e-146
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                        517   e-146
SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/                        517   e-146
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                        517   e-146
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/                        517   e-146
SSK290 (SSK290Q) /CSM/SS/SSK2-D/SSK290Q.Seq.d/                        517   e-146
SSG822 (SSG822Q) /CSM/SS/SSG8-A/SSG822Q.Seq.d/                        517   e-146
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   289  e-133  2
BH982050|BH982050.1 ode08h11.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    34  2.7  2
AC100822|AC100822.2 Homo sapiens chromosome 8, clone RP11-654O1, complete sequence.    44     39  3
dna update 2003. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   121   9e-27
protein update 2009. 2. 9
PSORT 

 psg: 0.65  gvh: 0.55  alm: 0.30  top: 0.53  tms: 0.07  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VFD243 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFD243Z
3' end seq. 
>VFD243Z.Seq
----------GCCCAAAATATTTTATTATCANAAGCCTCAAAAATTCAACCAACCTTATC
AAACAAAGTTGTTGANATNGNAGNTGTTTTACTCGCTCAAAATCAANACTCAACCATCAA
ACAATTNCAATNTGNTGTTGAAAAATCATCATTCGNTTCTTTNTTTACTGCTGNTTNTGN
TCATGAATTTGATGATCAAGCTACTTTCAACAAACAAGTTGAACAATCNTTTTTACAANA
TGGNTCATCATCNTTAAATTCAGCCAGCCNACAAGGNAGTGGATCAAGTAGNTCAGGATC
NAATGAACCNACTAAACNACNTTTCNCNTATGNTACNGGGCCNGNCCCTTCTGCNTATTT
GATTATCNCNATCNTATTAGCCCTTTTANTCNCTGGGATTTGNTG
Length of 3' end seq. 395
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -