VFD240 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFD240
Library	VF (Link to library)
Clone ID	VFD240 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	-
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFD2-B/VFD240Q.Seq.d/
Representative seq. ID	VFD240P (Link to Original site)
Representative DNA sequence	>VFD240 (VFD240Q) /CSM/VF/VFD2-B/VFD240Q.Seq.d/ GTAGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGG AAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGC AGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGA AGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAAT GTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGA ACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAA ACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGC ATTGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTT TTATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCA TATGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGAT GGGCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTTCATGGTGTCATCAACATGT AATTGGTCATCATATTTACACCXXXXXXXXXXGTATTGTCACTCCATTCCAAACTCGTTC ATGGTATCATAAATATCAACACATTTACGCTCCACTCCTCTATGGTATTTACACACTCAA ATATCGTACTCAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGT TAGTGTCGCCACAAATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTT CTTCCGTTTCATCCTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCT CATTGCTGAATTCGTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGC TGAAGATCTCAAATTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGA AGATTGGGCAATCCTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTG TACCTTTTTTAGTGGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGC TCAAGATTTCTACCCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACAT TACTTACCACATTAAACCANACTTCACTGAAGCTATTATGTCACACATTAATTACCTTNA CAAAATGGGTAATGATCCAGANTATGTTAAAAAACCATTAGCCTCAAAANA
sequence update	2001. 6. 1
Translated Amino Acid sequence	yflyiy*NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKE VLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRK HFKATDQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMH MMHDSCHAAISHYPGVWKWMGASFDFVTGASFLSWCHQHVIGHHIYT--- ---IVTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVATNFDK AAYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFAT PERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLV PIVKEVCKEHNITYHIKPXFTEAIMSHINYLXKMGNDPXYVKKPLASK
Translated Amino Acid sequence (All Frames)	Frame A: vvfsvhiliel*nvksnyrkaillvrvsqthkllgcsrwslyykmgtitsrwr sftfssrrcykfiklssnvrtninfkelnwiyfiitskicskirflqdikresk tfsnrsrstngsyfltfsiglsfsvcnllfstlyqqflfklflgnrlrtlqliilna ydafmscchftlsrrmemdgriifrhwcfipfmvsstcnwssylh--- ---vlslhsklvhgiinintftlhssmvfthsnivlkigkllrmvkmvqfvlvspqisi rpltslvncllfssvssfhsviialqifvissllnsslvgisqlisklvmslkisnsll plkdqmnhlksmkigqsfnlkllkimvmvhsfvpflvvliiklfiiyshqllkisthnl yqlkkfvknitllttlnxtslkllchtlitxtkwvmiqxmlknhpqx Frame B: yflyiy*NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKE VLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRK HFKATDQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMH MMHDSCHAAISHYPGVWKWMGASFDFVTGASFLSWCHQHVIGHHIYT--- ---ychsipnsfmvsisthlrstplwylhtqisysrlgsfckgwkwcnsccrhkfr* grlrhwivfcflpfhpstplslyrfnllfphcirlwlvshnfpsscrrsqilcy pktrtisnqrlgnpstnysrlwswftplylfwffkssscssfipincsrflpttc tnckrslrthylphtxlhsyyvthlpxqng*srxcktislkx Frame C: sifctyinrivikcqklqesntlgqspnitlkmivglqsmvkfmilqdgyhyiqvvkk fyfqqvemlqiylkviiqcqinqhqfrimkldifhhmniqnlfknqistrhkrelen ilkqpikihkwqlvfshvhwfifclltihiipvtifiivswqsfthfathysqci cmihvmlpfhiiqaygngwahhlisslvlhsfhgvinmlviift--- ---IVTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVATNFDK AAYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFAT PERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLV PIVKEVCKEHNITYHIKPXFTEAIMSHINYLXKMGNDPXYVKKPLASK
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFD240 (VFD240Q) /CSM/VF/VFD2-B/VFD240Q.Seq.d/ 2637 0.0 VFL212 (VFL212Q) /CSM/VF/VFL2-A/VFL212Q.Seq.d/ 1350 0.0 VFA219 (VFA219Q) /CSM/VF/VFA2-A/VFA219Q.Seq.d/ 1336 0.0 VFB864 (VFB864Q) /CSM/VF/VFB8-C/VFB864Q.Seq.d/ 1332 0.0 VFF662 (VFF662Q) /CSM/VF/VFF6-C/VFF662Q.Seq.d/ 1330 0.0 VFK616 (VFK616Q) /CSM/VF/VFK6-A/VFK616Q.Seq.d/ 1324 0.0 VFA320 (VFA320Q) /CSM/VF/VFA3-A/VFA320Q.Seq.d/ 1324 0.0 SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/ 1324 0.0 SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/ 1324 0.0 VFE188 (VFE188Q) /CSM/VF/VFE1-D/VFE188Q.Seq.d/ 1318 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BD092935\|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants. 1316 0.0 1 BD082645\|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids. 1316 0.0 1 BD082630\|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids. 1316 0.0 1 AB029311\|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds. 1061 0.0 4 AB022097\|AB022097.1 Dictyostelium discoideum mRNA for delta 5 fatty acid desaturase, complete cds. 149 e-125 12 AL355612\|AL355612.8 Human DNA sequence from clone RP11-343P23 on chromosome 6 Contains GSSs. 42 0.19 3 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.27 16 AC137050\|AC137050.1 Rattus norvegicus clone CH230-unknown, * SEQUENCING IN PROGRESS , 2 unordered pieces. 48 0.29 1 AC117308\|AC117308.7 Rattus norvegicus clone CH230-216M16, SEQUENCING IN PROGRESS , 2 unordered pieces. 48 0.29 1 AC117128\|AC117128.8 Rattus norvegicus clone CH230-230O8, SEQUENCING IN PROGRESS *, 5 unordered pieces. 48 0.29 1
dna update	2003. 9.15
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A; ... 880 0.0 (O96099) RecName: Full=Delta(5) fatty acid desaturase B; ... 595 e-169 (Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C... 531 e-149 AF419297_1(AF419297\|pid:none) Pythium irregulare delta-5 fatty a... 324 5e-87 AB188307_1(AB188307\|pid:none) Mortierella alpina gene for delta5... 306 9e-82 (O74212) RecName: Full=Delta(5) fatty acid desaturase; ... 305 3e-81 CQ831428_1(CQ831428\|pid:none) Sequence 9 from Patent WO2004057001. 255 3e-66 EF678404_1(EF678404\|pid:none) Picea sitchensis clone WS0291_A04 ... 254 4e-66 CP001574_328(CP001574\|pid:none) Micromonas sp. RCC299 chromosome... 250 1e-64 CP000592_278(CP000592\|pid:none) Ostreococcus lucimarinus CCE9901... 249 1e-64
protein update	2009. 6.18
PSORT	psg: 0.70 gvh: 0.24 alm: 0.25 top: 0.63 tms: 0.07 mit: 0.31 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 48.0 %: nuclear 28.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for VFD240 is nuc
5' end seq. ID	VFD240F
5' end seq.	>VFD240F.Seq GTAGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGG AAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGC AGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGA AGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAAT GTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGA ACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAA ACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGC ATTGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTT TTATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCA TATGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGAT GGGCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTTCATGGTGTCATCAACATGT AATTGGTCATCATATTTACACC----------
Length of 5' end seq.	682
3' end seq. ID	VFD240Z
3' end seq.	>VFD240Z.Seq ----------GTATTGTCACTCCATTCCAAACTCGTTCATGGTATCATAAATATCAACAC ATTTACGCTCCACTCCTCTATGGTATTTACACACTCAAATATCGTACTCAAGATTGGGAA GCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATTTCGAT AAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTCCACTC CGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCTTTGGT TGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCTTTGCT ACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATCCTTCAACTT AAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTA AATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTT GTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAACCANAC TTCACTGAAGCTATTATGTCACACATTAATTACCTTNACAAAATGGGTAATGATCCAGAN TATGTTAAAAAACCATTAGCCTCAAAANA
Length of 3' end seq.	679
Connected seq. ID	VFD240P
Connected seq.	>VFD240P.Seq GTAGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGG AAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGC AGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGA AGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAAT GTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGA ACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAA ACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGC ATTGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTT TTATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCA TATGATGCATGATTCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGAT GGGCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTTCATGGTGTCATCAACATGT AATTGGTCATCATATTTACACC----------GTATTGTCACTCCATTCCAAACTCGTTC ATGGTATCATAAATATCAACACATTTACGCTCCACTCCTCTATGGTATTTACACACTCAA ATATCGTACTCAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGT TAGTGTCGCCACAAATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTT CTTCCGTTTCATCCTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCT CATTGCTGAATTCGTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGC TGAAGATCTCAAATTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGA AGATTGGGCAATCCTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTG TACCTTTTTTAGTGGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGC TCAAGATTTCTACCCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACAT TACTTACCACATTAAACCANACTTCACTGAAGCTATTATGTCACACATTAATTACCTTNA CAAAATGGGTAATGATCCAGANTATGTTAAAAAACCATTAGCCTCAAAANA
Length of connected seq.	1361
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas