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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD239
Library VF
(Link to library)
Clone ID VFD239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15329-1
Original site URL
Representative seq. ID VFD239P
(Link to Original site)
Representative DNA sequence 
>VFD239 (VFD239Q) /CSM/VF/VFD2-B/VFD239Q.Seq.d/
AAAAATTTATTATTTTATTTAATAAAACATATACATATAACACATATTTTAATTACAAAT
ACACACAACTCCTAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAAC
CAGTCATAGATCAACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAA
TTACTTTTTACCATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAA
TTTAAATTATATTCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCT
CGAAGCTTTATGCCAACTCTTTACAAATGGTGTCTCTGGCAAATTGGATAAACCCGAAGA
ACTTGGTAAATGTATTGGTTTAGTATGCTTAAAGACTGGAGAAAGTAATGAATTCTACCG
TTATATTAAAACCACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAA
TGAATTAATGGCTGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTTGTACTGATCG
TGACTCTTATAAACATACAATTTCCTTATTCCAAGATTTATTATATACACAAAAAAAAAA
XXXXXXXXXXAAAATCATCATCACAAAATGTTAGATTATCTGCATCATTGAGTATTGCAA
TGATTGTTGATGATGTTAAAGAAAAAGTATTGGAAGATTTTGAAAGTGAAATGGGTAGTG
AAGATTTAAATGAAGATTATGAAGAATATGATGATGATGAAGATTATGATGGTGAATATA
ATTATGATGAAGAAGAAGAAGAGATCGAAAGGGATTATAGAAGAAGTAGTGATAATGGAG
GTAAATCAGCAGCACCAATTGATCAATTAAATAATTTAAGTTTTAATGGTGATGAATATA
ATAGCGATGATGATGAGGAAGGTGAATTTAGTGAATATAGTGAAGAGGATACAGTGAATC
AATTCATTGTAGACGATGATCATATGGTACAAGTTATTGAAGGAACCCTTAGTTTAAATA
ATGAAAAGGGTAAGAAAAAAATTCAATCCAAAACATTGTTACGTCAAATCCTTGGAAATT
TAAAGGATGGTGATTCACCAAAAGAAACTATCATCATCTATGGTTTACCATTCCATTTCA
GTGGTTGGAGAAAGTATATCCAATTGGAAGGTTTACGTAAACTCGTTGGTAATGCTATGA
TGGCTCAATGGCAAAATCCATTAATTCAAAAACAATTTGGTATTGAAATTCCTGAAGGTA
ATCGTTTAAGAGAAGCCAAATACCAATTAAAAAGATCAATCTCTCAAAAGAAAAAAGCAG
ACTATGATAGATCAGTTCGTTCAGAAAGTACTTTATTNAAAATAATGCTGCCAATTATTT
TNATAATAATAAAANANA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kiyyfi**niyi*hif*lqihttpk**nf*KMNIREKKKTSHRSTVAVHKALNEKDREFN
YFLPLLKEKKTSIVSNAINNLNYILTYQSEREEQVSKDILEALCQLFTNGVSGKLDKPEE
LGKCIGLVCLKTGESNEFYRYIKTTLSSIITDGEAHIKDNELMAAIYALSQSCFYCCTDR
DSYKHTISLFQDLLYTQKK---

---KSSSQNVRLSASLSIAMIVDDVKEKVLEDFESEMGSEDLNEDYEEYDDDEDYDGEYN
YDEEEEEIERDYRRSSDNGGKSAAPIDQLNNLSFNGDEYNSDDDEEGEFSEYSEEDTVNQ
FIVDDDHMVQVIEGTLSLNNEKGKKKIQSKTLLRQILGNLKDGDSPKETIIIYGLPFHFS
GWRKYIQLEGLRKLVGNAMMAQWQNPLIQKQFGIEIPEGNRLREAKYQLKRSISQKKKAD
YDRSVRSESTLXKIMLPIIXIIIKX
Translated Amino Acid sequence (All Frames) 
Frame A:
knllfylikhihithilitnthns*iikflkneykrkkenqs*inscsp*stk*kr*ri*
llftiikrkenkycikcnq*fklysyisi*krrts*qrysrsfmptlykwclwqig*trr
tw*mywfsmlkdwrk**ilply*nhtlfnynrw*ssh*r**ingcnlcaisvmfllly*s
*ll*tynfliprfiiytkkk---

---kiiitkc*iiciieycndc**c*rksigrf*k*ng**rfk*rl*ri****rl*w*i*
l**rrrrdrkgl*kk***wr*isstn*sik*fkf*w**i**r***gr*i**i**rgyses
ihcrr*sygtsy*rnp*fk**kg*eknsiqnivtsnpwkfkgw*ftkrnyhhlwftipfq
wlekvypigrft*trw*cydgsmaksinsktiwy*ns*r*sfkrsqipikkinlskeksr
l**issfrkyfixnnaanyfxnnkx

Frame B:
kiyyfi**niyi*hif*lqihttpk**nf*KMNIREKKKTSHRSTVAVHKALNEKDREFN
YFLPLLKEKKTSIVSNAINNLNYILTYQSEREEQVSKDILEALCQLFTNGVSGKLDKPEE
LGKCIGLVCLKTGESNEFYRYIKTTLSSIITDGEAHIKDNELMAAIYALSQSCFYCCTDR
DSYKHTISLFQDLLYTQKK---

---KSSSQNVRLSASLSIAMIVDDVKEKVLEDFESEMGSEDLNEDYEEYDDDEDYDGEYN
YDEEEEEIERDYRRSSDNGGKSAAPIDQLNNLSFNGDEYNSDDDEEGEFSEYSEEDTVNQ
FIVDDDHMVQVIEGTLSLNNEKGKKKIQSKTLLRQILGNLKDGDSPKETIIIYGLPFHFS
GWRKYIQLEGLRKLVGNAMMAQWQNPLIQKQFGIEIPEGNRLREAKYQLKRSISQKKKAD
YDRSVRSESTLXKIMLPIIXIIIKX

Frame C:
kfiilfnktytyntyfnykytqllnnkifkk*i*ekkrkpvidqqlqsikh*mkkienli
tfyhy*kkrkqvlyqmqsii*iiflhinlkeknklakifsklyanslqmvslanwinpkn
lvnvlv*ya*rlekvmnstvilkphslql*pmvkltlkimn*wlqsmrylshvsivvliv
tliniqfpyskiyyihkkk---

---nhhhkmldylhh*vlq*llmmlkkkywkilkvkwvvki*mkimknmmmmkimmvnii
mmkkkkrskgiieevvimevnqqhqlin*ii*vlmvmniiammmrkvnlvnivkriq*in
sl*tmiiwykllkeplv*imkrvrkkfnpkhcyvkslei*rmvihqkklsssmvyhsisv
vgesisnwkvyvnslvml*wlngkih*fknnlvlkflkviv*ekpntn*kdqslkrkkqt
midqfvqkvlyxk*ccqlfx***xx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD239 (VFD239Q) /CSM/VF/VFD2-B/VFD239Q.Seq.d/                       1142   0.0
SFD704 (SFD704Q) /CSM/SF/SFD7-A/SFD704Q.Seq.d/                       1142   0.0
AHD545 (AHD545Q) /CSM/AH/AHD5-B/AHD545Q.Seq.d/                       1126   0.0
AFH838 (AFH838Q) /CSM/AF/AFH8-B/AFH838Q.Seq.d/                       1126   0.0
CFK411 (CFK411Q) /CSM/CF/CFK4-A/CFK411Q.Seq.d/                       1122   0.0
AFK443 (AFK443Q) /CSM/AF/AFK4-B/AFK443Q.Seq.d/                       1118   0.0
AFD545 (AFD545Q) /CSM/AF/AFD5-B/AFD545Q.Seq.d/                       1118   0.0
SFJ114 (SFJ114Q) /CSM/SF/SFJ1-A/SFJ114Q.Seq.d/                       1114   0.0
CFB525 (CFB525Q) /CSM/CF/CFB5-B/CFB525Q.Seq.d/                       1114   0.0
AFK836 (AFK836Q) /CSM/AF/AFK8-B/AFK836Q.Seq.d/                       1114   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL049778|AL049778.3 Human chromosome 14 DNA sequence BAC R-643C12 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    36  0.002  7
AC091721|AC091721.2 Pan troglodytes clone RP43-97L19, WORKING DRAFT SEQUENCE, 4 ordered pieces.    38  0.008  5
AC146040|AC146040.1 Pan troglodytes chromosome UNK clone RP43-97N16, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38  0.008  5
AL353796|AL353796.16 Human DNA sequence from clone RP11-305E6 on chromosome 10.    38  0.036  4
AC108733|AC108733.4 Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40  0.058  7
AC006978|AC006978.2 Homo sapiens BAC clone GS1-66B6 from 7p15.2-p13, complete sequence.    36  0.059  4
AP004286|AP004286.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1425B2, complete sequence.    38  0.084  6
AC097633|AC097633.2 Homo sapiens chromosome 3 clone RP11-96F15, complete sequence.    38  0.19  3
AC090082|AC090082.3 Homo sapiens chromosome 8 clone CTD-2294B10 map 8, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    42  0.27  6
BY454822|BY454822.1 Mus musculus cDNA, RIKEN full-length enriched library, clone:K630078L08, 3' end partial sequence.    48  0.30  1
dna update 2003. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT039425_1(BT039425|pid:none) Zea mays full-length cDNA clone ZM...    46   0.004
BT039414_1(BT039414|pid:none) Zea mays full-length cDNA clone ZM...    45   0.005
AK099482_1(AK099482|pid:none) Oryza sativa Japonica Group cDNA c...    42   0.069
BT065557_1(BT065557|pid:none) Zea mays full-length cDNA clone ZM...    40   0.20
BT037216_1(BT037216|pid:none) Zea mays full-length cDNA clone ZM...    40   0.20
CP000553_1667(CP000553|pid:none) Prochlorococcus marinus str. NA...    37   1.3
AP004996_15(AP004996|pid:none) Oryza sativa Japonica Group genom...    36   2.9
CR380959_190(CR380959|pid:none) Candida glabrata strain CBS138 c...    35   5.0
AY815549_1(AY815549|pid:none) Schistosoma japonicum SJCHGC02132 ...    35   6.5
AC135597_29(AC135597|pid:none) Oryza sativa chromosome 3 BAC OSJ...    35   8.5
protein update 2009. 6.18
PSORT 

 psg: 0.68  gvh: 0.32  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VFD239 is nuc
5' end seq. ID VFD239F
5' end seq. 
>VFD239F.Seq
AAAAATTTATTATTTTATTTAATAAAACATATACATATAACACATATTTTAATTACAAAT
ACACACAACTCCTAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAAC
CAGTCATAGATCAACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAA
TTACTTTTTACCATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAA
TTTAAATTATATTCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCT
CGAAGCTTTATGCCAACTCTTTACAAATGGTGTCTCTGGCAAATTGGATAAACCCGAAGA
ACTTGGTAAATGTATTGGTTTAGTATGCTTAAAGACTGGAGAAAGTAATGAATTCTACCG
TTATATTAAAACCACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAA
TGAATTAATGGCTGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTTGTACTGATCG
TGACTCTTATAAACATACAATTTCCTTATTCCAAGATTTATTATATACACAAAAAAAAAA
----------
Length of 5' end seq. 600
3' end seq. ID VFD239Z
3' end seq. 
>VFD239Z.Seq
----------AAAATCATCATCACAAAATGTTAGATTATCTGCATCATTGAGTATTGCAA
TGATTGTTGATGATGTTAAAGAAAAAGTATTGGAAGATTTTGAAAGTGAAATGGGTAGTG
AAGATTTAAATGAAGATTATGAAGAATATGATGATGATGAAGATTATGATGGTGAATATA
ATTATGATGAAGAAGAAGAAGAGATCGAAAGGGATTATAGAAGAAGTAGTGATAATGGAG
GTAAATCAGCAGCACCAATTGATCAATTAAATAATTTAAGTTTTAATGGTGATGAATATA
ATAGCGATGATGATGAGGAAGGTGAATTTAGTGAATATAGTGAAGAGGATACAGTGAATC
AATTCATTGTAGACGATGATCATATGGTACAAGTTATTGAAGGAACCCTTAGTTTAAATA
ATGAAAAGGGTAAGAAAAAAATTCAATCCAAAACATTGTTACGTCAAATCCTTGGAAATT
TAAAGGATGGTGATTCACCAAAAGAAACTATCATCATCTATGGTTTACCATTCCATTTCA
GTGGTTGGAGAAAGTATATCCAATTGGAAGGTTTACGTAAACTCGTTGGTAATGCTATGA
TGGCTCAATGGCAAAATCCATTAATTCAAAAACAATTTGGTATTGAAATTCCTGAAGGTA
ATCGTTTAAGAGAAGCCAAATACCAATTAAAAAGATCAATCTCTCAAAAGAAAAAAGCAG
ACTATGATAGATCAGTTCGTTCAGAAAGTACTTTATTNAAAATAATGCTGCCAATTATTT
TNATAATAATAAAANANA
Length of 3' end seq. 788
Connected seq. ID VFD239P
Connected seq. 
>VFD239P.Seq
AAAAATTTATTATTTTATTTAATAAAACATATACATATAACACATATTTTAATTACAAAT
ACACACAACTCCTAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAAC
CAGTCATAGATCAACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAA
TTACTTTTTACCATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAA
TTTAAATTATATTCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCT
CGAAGCTTTATGCCAACTCTTTACAAATGGTGTCTCTGGCAAATTGGATAAACCCGAAGA
ACTTGGTAAATGTATTGGTTTAGTATGCTTAAAGACTGGAGAAAGTAATGAATTCTACCG
TTATATTAAAACCACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAA
TGAATTAATGGCTGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTTGTACTGATCG
TGACTCTTATAAACATACAATTTCCTTATTCCAAGATTTATTATATACACAAAAAAAAAA
----------AAAATCATCATCACAAAATGTTAGATTATCTGCATCATTGAGTATTGCAA
TGATTGTTGATGATGTTAAAGAAAAAGTATTGGAAGATTTTGAAAGTGAAATGGGTAGTG
AAGATTTAAATGAAGATTATGAAGAATATGATGATGATGAAGATTATGATGGTGAATATA
ATTATGATGAAGAAGAAGAAGAGATCGAAAGGGATTATAGAAGAAGTAGTGATAATGGAG
GTAAATCAGCAGCACCAATTGATCAATTAAATAATTTAAGTTTTAATGGTGATGAATATA
ATAGCGATGATGATGAGGAAGGTGAATTTAGTGAATATAGTGAAGAGGATACAGTGAATC
AATTCATTGTAGACGATGATCATATGGTACAAGTTATTGAAGGAACCCTTAGTTTAAATA
ATGAAAAGGGTAAGAAAAAAATTCAATCCAAAACATTGTTACGTCAAATCCTTGGAAATT
TAAAGGATGGTGATTCACCAAAAGAAACTATCATCATCTATGGTTTACCATTCCATTTCA
GTGGTTGGAGAAAGTATATCCAATTGGAAGGTTTACGTAAACTCGTTGGTAATGCTATGA
TGGCTCAATGGCAAAATCCATTAATTCAAAAACAATTTGGTATTGAAATTCCTGAAGGTA
ATCGTTTAAGAGAAGCCAAATACCAATTAAAAAGATCAATCTCTCAAAAGAAAAAAGCAG
ACTATGATAGATCAGTTCGTTCAGAAAGTACTTTATTNAAAATAATGCTGCCAATTATTT
TNATAATAATAAAANANA
Length of connected seq. 1388
Full length Seq ID -
Full length Seq. -
Length of full length seq. -