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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD211
Library VF
(Link to library)
Clone ID VFD211
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12612-1
Original site URL
Representative seq. ID VFD211P
(Link to Original site)
Representative DNA sequence 
>VFD211 (VFD211Q) /CSM/VF/VFD2-A/VFD211Q.Seq.d/
ACTATCAACAATATTGTTATACTTGAAACAGATACAAAATGGTCAGAATCAGTGTTTTAA
ACGATTGCTTAAACTCCATTGTCAATGCCGAAAGACAAGGTAAAAGACAAGTCTTAGTCA
GACCATCATCAAAAGTCATCGTTAAATTCTTAGAAGTTATGATGAAAAAGAGATACATTG
GTGAATTCGAAATCGTTGATGACCATCGTTCCGGTAAAATTGTCATTGATTTAATCGGTC
GTATCAACAAATGTGGTGTCATCTCCCCAAGATTTGACGTTACTTTAGACGAAATCGAAA
AATGGGCCTCTTACTTACTCCCATCCCGTCAATTCGGTCATATCGTCCTCACCACCTCCC
TCGGTATCATGGACCACAACGAAGCCAAAACCAGACACACTGGTGGTAAATTATTAGGTT
TCTTCTATTAAATTGCTAGTCTTTTTTAAATAAAATTAAAATATTATTTAAATCCTTTAA
AAAAAAAAXXXXXXXXXXACTATCAACAATATTGTTATACTTGAAACAGATACAAAATGG
TCAGAATCAGTGTTTTAAACGATTGCTTAAACTCCATTGTCAATGCCGAAAGACAAGGTA
AAAGACAAGTCTTAGTCAGACCATCATCAAAAGTCATCGTTAAATTCTTAGAAGTTATGA
TGAAAAAGAGATACATTGGTGAATTCGAAATCGTTGATGACCATCGTTCCGGTAAAATTG
TCATTGATTTAATCGGTCGTATCAACAAATGTGGTGTCATCTCCCCAAGATTTGACGTTA
CTTTAGACGAAATCGAAAAATGGGCCTCTTACTTACTCCCATCCCGTCAATTCGGTCATA
TCGTCCTCACCACCTCCCTCGGTATCATGGACCACAACGAAGCCAAAACCAGACACACTG
GTGGTAAATTATTAGGTTTCTTCTATTAAATTGCNAGTCTTTTTTAAATAAAATTAAAAT
AT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lstillylkqiqngqnqcfkrllklhcqcrktr*ktslsqtiikshr*ilrsydekeihw
*irnr**psfr*nch*fnrsyqqmwchlpki*ryfrrnrkmgllltpipsirsyrphhlp
ryhgpqrsqnqthww*iirflllnc*SFLNKIKILFKSFKKK---

---LSTILLYLKQIQNGQNQCFKRLLKLHCQCRKTR*ktslsqtiikshr*ilrsydeke
ihw*irnr**psfr*nch*fnrsyqqmwchlpki*ryfrrnrkmgllltpipsirsyrph
hlpryhgpqrsqnqthww*iirflllncxsflnkiki
Translated Amino Acid sequence (All Frames) 
Frame A:
tinniviletdtkwsesvf*tia*tplsmpkdkvkdks*sdhhqksslns*kl**krdtl
vnskslmtivpvklsli*svvstnvvsspqdltll*tkskngpltyshpvnsvisssppp
svswtttkpkpdtlvvny*vssikllvffk*n*nii*il*kk---

---tinniviletdtkwsesvf*tia*tplsmpkdkvkdks*sdhhqksslns*kl**kr
dtlvnskslmtivpvklsli*svvstnvvsspqdltll*tkskngpltyshpvnsvisss
pppsvswtttkpkpdtlvvny*vssiklxvffk*n*n

Frame B:
lstillylkqiqngqnqcfkrllklhcqcrktr*ktslsqtiikshr*ilrsydekeihw
*irnr**psfr*nch*fnrsyqqmwchlpki*ryfrrnrkmgllltpipsirsyrphhlp
ryhgpqrsqnqthww*iirflllnc*SFLNKIKILFKSFKKK---

---LSTILLYLKQIQNGQNQCFKRLLKLHCQCRKTR*ktslsqtiikshr*ilrsydeke
ihw*irnr**psfr*nch*fnrsyqqmwchlpki*ryfrrnrkmgllltpipsirsyrph
hlpryhgpqrsqnqthww*iirflllncxsflnkiki

Frame C:
yqqycyt*nrykmvrisvlndclnsivnaerqgkrqvlvrpsskvivkflevmmkkryig
efeivddhrsgkividligrinkcgvisprfdvtldeiekwasyllpsrqfghivlttsl
gimdhneaktrhtggkllgffy*iaslf*iklkyylnplkkk---

---yqqycyt*nrykmvrisvlndclnsivnaerqgkrqvlvrpsskvivkflevmmkkr
yigefeivddhrsgkividligrinkcgvisprfdvtldeiekwasyllpsrqfghivlt
tslgimdhneaktrhtggkllgffy*iaslf*iklky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD211 (VFD211Q) /CSM/VF/VFD2-A/VFD211Q.Seq.d/                        948   0.0
VSK154 (VSK154Q) /CSM/VS/VSK1-C/VSK154Q.Seq.d/                        920   0.0
VSE466 (VSE466Q) /CSM/VS/VSE4-C/VSE466Q.Seq.d/                        918   0.0
VSJ633 (VSJ633Q) /CSM/VS/VSJ6-B/VSJ633Q.Seq.d/                        900   0.0
VSH391 (VSH391Q) /CSM/VS/VSH3-D/VSH391Q.Seq.d/                        896   0.0
SSF559 (SSF559Q) /CSM/SS/SSF5-C/SSF559Q.Seq.d/                        896   0.0
VSA751 (VSA751Q) /CSM/VS/VSA7-C/VSA751Q.Seq.d/                        892   0.0
VSI567 (VSI567Q) /CSM/VS/VSI5-C/VSI567Q.Seq.d/                        890   0.0
VSI476 (VSI476Q) /CSM/VS/VSI4-D/VSI476Q.Seq.d/                        856   0.0
AFJ856 (AFJ856Q) /CSM/AF/AFJ8-C/AFJ856Q.Seq.d/                        850   0.0
own update 2001.10.16
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.   896  0.0  4
U27539|U27539.1 Dictyostelium discoideum 40S ribosomal protein S24 mRNA, complete cds.   817  0.0  1
AX073276|AX073276.1 Sequence 387 from Patent WO0102550.           66  8e-19  4
BI743342|BI743342.1 kx41g12.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RS1A_STRPU P33095 40S RIBOSOMAL PROTEIN S15A ;, mRNA sequence.    80  4e-18  3
BG661408|BG661408.1 kx01e04.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RS1A_HUMAN P39027 40S RIBOSOMAL PROTEIN S15A. [1] ;, mRNA sequence.    80  5e-18  3
BG661537|BG661537.1 kx03b05.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RS1A_HUMAN P39027 40S RIBOSOMAL PROTEIN S15A. [1] ;, mRNA sequence.    80  6e-18  3
BG661715|BG661715.1 kx05e02.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RS1A_HUMAN P39027 40S RIBOSOMAL PROTEIN S15A. [1] ;, mRNA sequence.    80  6e-18  3
AF365406|AF365406.1 Candida albicans YIP3-like protein (YIP3) gene, partial cds; and ribosomal protein L39 (RPL39), ribosomal protein S22 (RPS22), and ribosomal protein S14 (RPS14) genes, complete cds.    66  5e-17  4
AL114533|AL114533.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    60  4e-13  4
AL111990|AL111990.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    60  5e-13  4
dna update 2003. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P46793) RecName: Full=40S ribosomal protein S15a; AltName: Full...   261   3e-68
U27539_1(U27539|pid:none) Dictyostelium discoideum 40S ribosomal...   258   3e-67
CR940348_885(CR940348|pid:none) Theileria annulata strain Ankara...   209   9e-53
AY857473_1(AY857473|pid:none) Suberites domuncula S15a mRNA, com...   203   8e-51
EF638942_1(EF638942|pid:none) Triatoma infestans clone TI-111 40...   201   2e-50
AF159546_1(AF159546|pid:none) Lapemis hardwickii ribosomal prote...   200   7e-50
BT078894_1(BT078894|pid:none) Esox lucius clone eluc-evq-531-019...   199   2e-49
AY961547_1(AY961547|pid:none) Lysiphlebus testaceipes ribosomal ...   199   2e-49
(P62244) RecName: Full=40S ribosomal protein S15a;  &(P62245) Re...   199   2e-49
AK062943_1(AK062943|pid:none) Oryza sativa Japonica Group cDNA c...   198   2e-49
protein update 2009. 6.18
PSORT 

 psg: 0.57  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.52  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VFD211 is mit
5' end seq. ID VFD211F
5' end seq. 
>VFD211F.Seq
ACTATCAACAATATTGTTATACTTGAAACAGATACAAAATGGTCAGAATCAGTGTTTTAA
ACGATTGCTTAAACTCCATTGTCAATGCCGAAAGACAAGGTAAAAGACAAGTCTTAGTCA
GACCATCATCAAAAGTCATCGTTAAATTCTTAGAAGTTATGATGAAAAAGAGATACATTG
GTGAATTCGAAATCGTTGATGACCATCGTTCCGGTAAAATTGTCATTGATTTAATCGGTC
GTATCAACAAATGTGGTGTCATCTCCCCAAGATTTGACGTTACTTTAGACGAAATCGAAA
AATGGGCCTCTTACTTACTCCCATCCCGTCAATTCGGTCATATCGTCCTCACCACCTCCC
TCGGTATCATGGACCACAACGAAGCCAAAACCAGACACACTGGTGGTAAATTATTAGGTT
TCTTCTATTAAATTGCTAGTCTTTTTTAAATAAAATTAAAATATTATTTAAATCCTTTAA
AAAAAAAA----------
Length of 5' end seq. 488
3' end seq. ID VFD211Z
3' end seq. 
>VFD211Z.Seq
----------ACTATCAACAATATTGTTATACTTGAAACAGATACAAAATGGTCAGAATC
AGTGTTTTAAACGATTGCTTAAACTCCATTGTCAATGCCGAAAGACAAGGTAAAAGACAA
GTCTTAGTCAGACCATCATCAAAAGTCATCGTTAAATTCTTAGAAGTTATGATGAAAAAG
AGATACATTGGTGAATTCGAAATCGTTGATGACCATCGTTCCGGTAAAATTGTCATTGAT
TTAATCGGTCGTATCAACAAATGTGGTGTCATCTCCCCAAGATTTGACGTTACTTTAGAC
GAAATCGAAAAATGGGCCTCTTACTTACTCCCATCCCGTCAATTCGGTCATATCGTCCTC
ACCACCTCCCTCGGTATCATGGACCACAACGAAGCCAAAACCAGACACACTGGTGGTAAA
TTATTAGGTTTCTTCTATTAAATTGCNAGTCTTTTTTAAATAAAATTAAAATAT
Length of 3' end seq. 464
Connected seq. ID VFD211P
Connected seq. 
>VFD211P.Seq
ACTATCAACAATATTGTTATACTTGAAACAGATACAAAATGGTCAGAATCAGTGTTTTAA
ACGATTGCTTAAACTCCATTGTCAATGCCGAAAGACAAGGTAAAAGACAAGTCTTAGTCA
GACCATCATCAAAAGTCATCGTTAAATTCTTAGAAGTTATGATGAAAAAGAGATACATTG
GTGAATTCGAAATCGTTGATGACCATCGTTCCGGTAAAATTGTCATTGATTTAATCGGTC
GTATCAACAAATGTGGTGTCATCTCCCCAAGATTTGACGTTACTTTAGACGAAATCGAAA
AATGGGCCTCTTACTTACTCCCATCCCGTCAATTCGGTCATATCGTCCTCACCACCTCCC
TCGGTATCATGGACCACAACGAAGCCAAAACCAGACACACTGGTGGTAAATTATTAGGTT
TCTTCTATTAAATTGCTAGTCTTTTTTAAATAAAATTAAAATATTATTTAAATCCTTTAA
AAAAAAAA----------ACTATCAACAATATTGTTATACTTGAAACAGATACAAAATGG
TCAGAATCAGTGTTTTAAACGATTGCTTAAACTCCATTGTCAATGCCGAAAGACAAGGTA
AAAGACAAGTCTTAGTCAGACCATCATCAAAAGTCATCGTTAAATTCTTAGAAGTTATGA
TGAAAAAGAGATACATTGGTGAATTCGAAATCGTTGATGACCATCGTTCCGGTAAAATTG
TCATTGATTTAATCGGTCGTATCAACAAATGTGGTGTCATCTCCCCAAGATTTGACGTTA
CTTTAGACGAAATCGAAAAATGGGCCTCTTACTTACTCCCATCCCGTCAATTCGGTCATA
TCGTCCTCACCACCTCCCTCGGTATCATGGACCACAACGAAGCCAAAACCAGACACACTG
GTGGTAAATTATTAGGTTTCTTCTATTAAATTGCNAGTCTTTTTTAAATAAAATTAAAAT
AT
Length of connected seq. 952
Full length Seq ID -
Full length Seq. -
Length of full length seq. -