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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFD146
Library VF
(Link to library)
Clone ID VFD146
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16263-1
Original site URL
Representative seq. ID VFD146Z
(Link to Original site)
Representative DNA sequence 
>VFD146 (VFD146Q) /CSM/VF/VFD1-B/VFD146Q.Seq.d/
XXXXXXXXXXCTGTCGTTCATAATGTCGCTGACCTTTATAATAATGTTTTAATTGATACA
CCATTAGCACCATACATTCAAGGTTGTTTATCANAAGAAGATTTAGATGAAATGAATATT
GAAATTATTAGAAATACTTTATATAAAGCTTATTTANAAGATTTTTACAACTATTGCAAA
TATCTCGGTGGTCAAACTGAATTGATCATGAGTGATATTTTAAAGTTTGAAGCAGATCGT
AGATCAATCAATATCACAATCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGT
GAAAAACTTTACCCATCCTTAGGTCTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAA
GCTGAAGACGTTGATCAAGTTANAGGTATCCTCGAAGTTTACTCTACCTATCGTAATTTC
TTCTCTGATGGTGTCAACAACGAGAAATCATTGGAAGACTCATTCTTTGAACATGAAGTT
CACTTAAATCGTATGGCTTTTGAAGATCAATATGGTTATGGTGTCTTTTACGCTTACATT
AAATTAAGAGAACAAGAAATTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAAT
ATGAAACAAAAAATGAATCAATACATTCCAATCTTTTAAAAAAATAACTATATCTAATTA
TTAAAAAAAATAAAAAAAAAAATAAAAAAAAAATAAAATAAAATAAAACAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---VVHNVADLYNNVLIDTPLAPYIQGCLSXEDLDEMNIEIIRNTLYKAYLXDFYNYCKY
LGGQTELIMSDILKFEADRRSINITINSFGATELSKDDREKLYPSLGLLYPEGTSKLGKA
EDVDQVXGILEVYSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIK
LREQEIRNIVWIAECISQNMKQKMNQYIPIF*knnyi*llkkikkkikkk*nkikq
Translated Amino Acid sequence (All Frames) 
Frame A:
---crs*cr*pl**cfn*ytistihsrlfixrrfr*ney*ny*kyfi*slfxrflqllqi
srwsn*idhe*yfkv*srs*inqyhnq*fwcn*tlkg*s*ktlpilrsfiprry*qtw*s
*rr*ssxryprsllyls*fll*wcqqreiigrlil*t*sslksygf*rsiwlwcllrlh*
ikrtrn*kysldc*my*skyetknesihsnllkk*lyliikknkkknkkkik*nkt


Frame B:
---VVHNVADLYNNVLIDTPLAPYIQGCLSXEDLDEMNIEIIRNTLYKAYLXDFYNYCKY
LGGQTELIMSDILKFEADRRSINITINSFGATELSKDDREKLYPSLGLLYPEGTSKLGKA
EDVDQVXGILEVYSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIK
LREQEIRNIVWIAECISQNMKQKMNQYIPIF*knnyi*llkkikkkikkk*nkikq


Frame C:
---sfimsltfiimf*lihh*hhtfkvvyxkki*mk*ilklleilyiklixkifttiani
svvkln*s*vif*slkqivdqsisqsivlvqlnsqrmivknfthp*vfytqkvlanlvkl
ktliklxvsskftlpivisslmvsttrnhwkthslnmkft*ivwllkinmvmvsftltln
*enkklei*fgllnvlvki*nkk*intfqsfkkitisny*kk*kkk*kknkik*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA730 (VSA730Q) /CSM/VS/VSA7-B/VSA730Q.Seq.d/                       1275   0.0
VFD146 (VFD146Q) /CSM/VF/VFD1-B/VFD146Q.Seq.d/                       1275   0.0
SSK721 (SSK721Q) /CSM/SS/SSK7-A/SSK721Q.Seq.d/                       1275   0.0
SSF396 (SSF396Q) /CSM/SS/SSF3-D/SSF396Q.Seq.d/                       1275   0.0
SSI279 (SSI279Q) /CSM/SS/SSI2-D/SSI279Q.Seq.d/                       1261   0.0
CFI692 (CFI692Q) /CSM/CF/CFI6-D/CFI692Q.Seq.d/                       1255   0.0
CFC532 (CFC532Q) /CSM/CF/CFC5-B/CFC532Q.Seq.d/                       1255   0.0
VFB526 (VFB526Q) /CSM/VF/VFB5-B/VFB526Q.Seq.d/                       1241   0.0
VFN401 (VFN401Q) /CSM/VF/VFN4-A/VFN401Q.Seq.d/                       1231   0.0
VFE465 (VFE465Q) /CSM/VF/VFE4-C/VFE465Q.Seq.d/                       1227   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds.  1251  0.0  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1168  0.0  2
BI742459|BI742459.1 kt51b11.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q9W4P5 Q9W4P5 CG2934 PROTEIN. ;, mRNA sequence.    94  1e-21  3
BE580863|BE580863.1 kp82d12.y2 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    86  9e-20  4
CB098495|CB098495.1 ku54c04.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q9W4P5 Q9W4P5 CG2934 PROTEIN. ;, mRNA sequence.    86  2e-19  3
BE580116|BE580116.1 kq37d03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    86  7e-15  2
BE029219|BE029219.1 kp26d05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:VATX_BOVIN P12953 VACUOLAR ATP SYNTHASE SUBUNIT AC39 ;, mRNA sequence.    76  7e-14  2
BE223572|BE223572.1 kp82d12.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    78  8e-13  2
BI508631|BI508631.1 BB170008B10B05.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170008B10B05 5', mRNA sequence.    80  4e-11  1
BI516963|BI516963.1 BB160024A10C05.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160024A10C05 5', mRNA sequence.    80  4e-11  1
dna update 2003. 9.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54641) RecName: Full=V-type proton ATPase subunit d;          ...   417   e-115
A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di...   414   e-114
(Q9W4P5) RecName: Full=V-type proton ATPase subunit d 1;        ...   256   4e-67
BT081086_1(BT081086|pid:none) Caligus clemensi clone ccle-evs-51...   254   2e-66
BT077935_1(BT077935|pid:none) Lepeophtheirus salmonis clone lsal...   254   2e-66
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor...   253   5e-66
(Q5ZHL0) RecName: Full=V-type proton ATPase subunit d 2;        ...   252   7e-66
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran...   251   2e-65
AC006611_1(AC006611|pid:none) Caenorhabditis elegans cosmid C30F...   251   2e-65
(P51863) RecName: Full=V-type proton ATPase subunit d 1;        ...   250   3e-65
protein update 2009. 6.18
PSORT 

 psg: 0.75  gvh: 0.54  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for VFD146 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFD146Z
3' end seq. 
>VFD146Z.Seq
----------CTGTCGTTCATAATGTCGCTGACCTTTATAATAATGTTTTAATTGATACA
CCATTAGCACCATACATTCAAGGTTGTTTATCANAAGAAGATTTAGATGAAATGAATATT
GAAATTATTAGAAATACTTTATATAAAGCTTATTTANAAGATTTTTACAACTATTGCAAA
TATCTCGGTGGTCAAACTGAATTGATCATGAGTGATATTTTAAAGTTTGAAGCAGATCGT
AGATCAATCAATATCACAATCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGT
GAAAAACTTTACCCATCCTTAGGTCTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAA
GCTGAAGACGTTGATCAAGTTANAGGTATCCTCGAAGTTTACTCTACCTATCGTAATTTC
TTCTCTGATGGTGTCAACAACGAGAAATCATTGGAAGACTCATTCTTTGAACATGAAGTT
CACTTAAATCGTATGGCTTTTGAAGATCAATATGGTTATGGTGTCTTTTACGCTTACATT
AAATTAAGAGAACAAGAAATTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAAT
ATGAAACAAAAAATGAATCAATACATTCCAATCTTTTAAAAAAATAACTATATCTAATTA
TTAAAAAAAATAAAAAAAAAAATAAAAAAAAAATAAAATAAAATAAAACAA
Length of 3' end seq. 701
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -