VFD143
Library VF
(Link to library)
Clone ID VFD143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14931-1
Original site URL
Representative seq. ID VFD143Z
(Link to Original site)
Representative DNA sequence
>VFD143 (VFD143Q) /CSM/VF/VFD1-B/VFD143Q.Seq.d/
XXXXXXXXXXATTGTGGTCCAGAGGACTATCAAAGAANNACAGAGATACCATCTCAAGAG
CAAAAACCATCGTTTGGAATGGTCCTATGGGTGTATTTGAAAAGAGCAATTTCGAAGCCG
GTACAAAAGCTGCCATGGATGATGTTGTCAATGCCACAACCAATGGTGCTATCACTATCA
TTGGTGGTGGTGATACCGCCACTTGTGCTGCCAAATACAACACTGAAGATAAAGTTAGTC
ATGTCTCAACTGGTGGTGGTGCTTCATTAGAATTATTAGAAGGTAAAGAATTACCAGGTG
TTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---LWSRGLSKXXRDTISRAKTIVWNGPMGVFEKSNFEAGTKAAMDDVVNATTNGAITII
GGGDTATCAAKYNTEDKVSHVSTGGGASLELLEGKELPGV


Translated Amino Acid sequence (All Frames)
Frame A:
---LWSRGLSKXXRDTISRAKTIVWNGPMGVFEKSNFEAGTKAAMDDVVNATTNGAITII
GGGDTATCAAKYNTEDKVSHVSTGGGASLELLEGKELPGV


Frame B:
---cgpedyqrxteipsqeqkpsfgmvlwvylkraiskpvqklpwmmlsmpqpmvlslsl
vvvipplvlpnttlkiklvmsqlvvvlh*ny*kvknyqvl


Frame C:
---vvqrtikexqryhlksknhrlewsygci*keqfrsrykschg*ccqchnqwcyhyhw
ww*yrhlccqiqh*r*s*sclnwwwcfiriirr*ritrc


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD143 (VFD143Q) /CSM/VF/VFD1-B/VFD143Q.Seq.d/ 569 e-162
VSI344 (VSI344Q) /CSM/VS/VSI3-B/VSI344Q.Seq.d/ 543 e-154
VSD369 (VSD369Q) /CSM/VS/VSD3-C/VSD369Q.Seq.d/ 543 e-154
VHD789 (VHD789Q) /CSM/VH/VHD7-D/VHD789Q.Seq.d/ 543 e-154
VFO749 (VFO749Q) /CSM/VF/VFO7-C/VFO749Q.Seq.d/ 543 e-154
VFO594 (VFO594Q) /CSM/VF/VFO5-D/VFO594Q.Seq.d/ 543 e-154
VFN471 (VFN471Q) /CSM/VF/VFN4-C/VFN471Q.Seq.d/ 543 e-154
VFL513 (VFL513Q) /CSM/VF/VFL5-A/VFL513Q.Seq.d/ 543 e-154
VFL140 (VFL140Q) /CSM/VF/VFL1-B/VFL140Q.Seq.d/ 543 e-154
VFK529 (VFK529Q) /CSM/VF/VFK5-B/VFK529Q.Seq.d/ 543 e-154

own update 2002.12.16
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF018637|AF018637.1 Dictyostelium discoideum phosphoglycerate kinase (pgkA) mRNA, partial cds. 523 e-147 3
AF316577|AF316577.2 Dictyostelium discoideum phosphoglycerate kinase (pgkA) mRNA, complete cds. 523 e-146 3
AL403633|AL403633.1 T7 end of clone AT0AA009H08 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii. 94 6e-22 2
D12474|D12474.1 Candida maltosa C-PGK1 gene for phosphoglycerate kinase, complete cds. 90 6e-21 2
AX488918|AX488918.1 Sequence 6218 from Patent WO02053728. 82 1e-17 2
U25180|U25180.1 Candida albicans phosphoglycerate kinase (PGK1) gene, complete cds. 82 2e-17 2
BU724812|PGK_SCHMA PHOSPHOGLYCERATE KINASE, mRNA sequence. 62 8e-17 3
I03094|I03094.1 Sequence 6 from Patent US 4615974. 78 6e-16 2
A15343|A15343.1 PGK gene from EcoRI site to nucleotide 140 beyond the stop codon. 78 6e-16 2
T38808|T38808.1 EST104369 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence. 78 7e-16 2
dna update 2003. 9.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9GPM4) RecName: Full=Phosphoglycerate kinase; EC=2.7.... 130 1e-29
AF018637_1(AF018637|pid:none) Dictyostelium discoideum phosphogl... 130 1e-29
AY309061_1(AY309061|pid:none) Schistosoma japonicum phosphoglyce... 108 7e-23
FN315990_1(FN315990|pid:none) Schistosoma japonicum isolate Anhu... 108 7e-23
EZ000104_1(EZ000104|pid:none) TSA: Schistosoma japonicum SJCHGC0... 108 7e-23
AY223444_1(AY223444|pid:none) Schistosoma japonicum clone ZZZ452... 108 7e-23
FN322120_1(FN322120|pid:none) Schistosoma japonicum isolate Anhu... 108 7e-23
FN315993_1(FN315993|pid:none) Schistosoma japonicum isolate Anhu... 106 3e-22
(P41759) RecName: Full=Phosphoglycerate kinase; EC=2.7.... 104 8e-22
DQ112667_1(DQ112667|pid:none) Fasciola hepatica phosphoglycerate... 102 3e-21
protein update 2009. 6.18
PSORT

psg: 0.52 gvh: 0.35 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: mitochondrial
16.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VFD143 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFD143Z
3' end seq.
>VFD143Z.Seq
----------ATTGTGGTCCAGAGGACTATCAAAGAANNACAGAGATACCATCTCAAGAG
CAAAAACCATCGTTTGGAATGGTCCTATGGGTGTATTTGAAAAGAGCAATTTCGAAGCCG
GTACAAAAGCTGCCATGGATGATGTTGTCAATGCCACAACCAATGGTGCTATCACTATCA
TTGGTGGTGGTGATACCGCCACTTGTGCTGCCAAATACAACACTGAAGATAAAGTTAGTC
ATGTCTCAACTGGTGGTGGTGCTTCATTAGAATTATTAGAAGGTAAAGAATTACCAGGTG
TTA
Length of 3' end seq. 293
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -