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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC850
Library VF
(Link to library)
Clone ID VFC850
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16279-1
Original site URL
Representative seq. ID VFC850P
(Link to Original site)
Representative DNA sequence 
>VFC850 (VFC850Q) /CSM/VF/VFC8-C/VFC850Q.Seq.d/
ATTAATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATT
AGATGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCA
AAATAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGC
TTTAACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGA
TCCAGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGG
AACTAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGA
TAAAACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGG
TAGAGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACT
TGCAACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGA
GAATGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCC
ATGTAAGAATGGXXXXXXXXXXGATTCAGCAGATTCACAACCCAACCCATTGGTACTGGT
GGTGCACAAACTTGGAATTTAACAGCTCATGGTAAGAATATGCATAGTGCTATGCCATAT
AGAACTGTAAACTCTGTAGAGTTGGTCAACGAAGCATTGGCTGAGATTCAACGTCGTCTC
TACATTGACTTCAAACCACATCCAAAAGAAGCCGAATATAAATTCGATTGTTCATCAACA
ATGAAACCATTCCAGGTGAGTCAACCATTTGTGGTGATATTCGTTTAACTCCATTCTATG
ATATGAAAGAAATGCGTGCAAAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCA
CTGAACTTCGTAATAGAGGTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTG
AACCAGTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTT
GTAAACTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTACTTCTGAAATTTTAGGTT
CATTAACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTG
GTTTCGATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAAT
ATGCTTTATTATCTGATTTTAAAAATGCTATTAAAATTTTATCTCGTACAATNATTTATT
AGAAAAAAATTAAATTAAAATCCAATAAAACNCTTTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
li*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEA
LTPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPAD
KTAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEE
NDEIPGIGVDALDHSGKMNPCKN---

---FSRFTTQPIGTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRLYIDFK
PHPKEAEYKFDCSSTMKPFQVSQPFVVIFV*lhsmi*kkcvqklkviskismpislnfvi
evhtvnmmyqplkvlnqskvqsllng*vkhqlvslvnstlmvtkhlvklllkf*vh*lql
qlvvlflwfviskivvsifkllvlvkkklimlimnmlyylilkmllkfylvqxfirkkln
*npikxf
Translated Amino Acid sequence (All Frames) 
Frame A:
inltnfnk*knd*tscfi*ir*kkipyiir*inw*n*kspk*ttsfnsn*r*crssch*s
fnsilkskwwcfrirtssl*ssklskkr*hyy*iprylqrn*ftknnficwftfrcsss*
*nclg*ksipiny*r**iiw*ryn*lfrtcciinrfiystcn*ktst*tfnfcsiyck*r
e**nsrywcrcirs*wkdesm*ew---

---dsadsqpnplvlvvhklgi*qlmvricivlchiel*tl*swstkhwlrfnvvstlts
nhiqkkpninsivhqq*nhsr*vnhlw*ysfnsil*yernacks*rlyqryqcqyh*ts*
*rsiq*i*ctsl*rc*tsqrfsly*mvr*siswcrl*trl*wlqstw*syf*nfrfinss
cnlwyssfgs*spr*wfrysnywfw*rrnlsc***icfii*f*kcy*nfisynxllekn*
ikiq*nxf

Frame B:
li*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEA
LTPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPAD
KTAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEE
NDEIPGIGVDALDHSGKMNPCKN---

---iqqihnpthwywwctnlefnssw*eya*cyai*ncklcrvgqrsig*dstsslh*lq
ttskrsri*irlfinnetipgesticgdirltpfydmkemrakvegyikdinanitelrn
rgpyskydvpasegvepvkgsvsiewlgeasagvackldsdgykalgkatseilgsltpv
atcgtlplvrdlqdsgfdiqitgfgkeetyhadneyallsdfknaikilsrtxiy*kkik
lksnktlf

Frame C:
*fnkfq*ikk*lnqllhmn*mkkdslhy*vn*lvklkiskidhql*fqlkimqvvmslkl
*lht*kqmvvf*n*nkftviq*tiqkevtlllntqvppkelvhqkqfhllvhi*m*fqli
kllgieihsn*llkvinymvevqliv*dmlhy*qiylfnlqlknqhlniqflqyll*vkr
mmkfqvlvsmh*iiver*ihvrm---

---FSRFTTQPIGTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRLYIDFK
PHPKEAEYKFDCSSTMKPFQVSQPFVVIFV*lhsmi*kkcvqklkviskismpislnfvi
evhtvnmmyqplkvlnqskvqsllng*vkhqlvslvnstlmvtkhlvklllkf*vh*lql
qlvvlflwfviskivvsifkllvlvkkklimlimnmlyylilkmllkfylvqxfirkkln
*npikxf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC850 (VFC850Q) /CSM/VF/VFC8-C/VFC850Q.Seq.d/                       2434   0.0
VFN257 (VFN257Q) /CSM/VF/VFN2-C/VFN257Q.Seq.d/                       1172   0.0
VFM730 (VFM730Q) /CSM/VF/VFM7-B/VFM730Q.Seq.d/                       1172   0.0
VFM548 (VFM548Q) /CSM/VF/VFM5-B/VFM548Q.Seq.d/                       1172   0.0
VFL392 (VFL392Q) /CSM/VF/VFL3-D/VFL392Q.Seq.d/                       1172   0.0
VFI633 (VFI633Q) /CSM/VF/VFI6-B/VFI633Q.Seq.d/                       1172   0.0
VFF792 (VFF792Q) /CSM/VF/VFF7-D/VFF792Q.Seq.d/                       1172   0.0
VFC739 (VFC739Q) /CSM/VF/VFC7-B/VFC739Q.Seq.d/                       1172   0.0
AFK675 (AFK675Q) /CSM/AF/AFK6-D/AFK675Q.Seq.d/                       1172   0.0
AFI271 (AFI271Q) /CSM/AF/AFI2-C/AFI271Q.Seq.d/                       1172   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U23957|U23957.1 Dictyostelium discoideum P52D mRNA, complete cds.  1126  0.0  7
AW093338|AW093338.1 EST286518 tomato mixed elicitor, BTI Lycopersicon esculentum cDNA clone cLET24F3, mRNA sequence.    34  9e-05  5
AB036420|AB036420.1 Citrullus lanatus mRNA for DIP-1, complete cds.    40  1e-04  3
AI899153|AI899153.1 EST268596 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED37K14, mRNA sequence.    34  0.002  4
BI935707|BI935707.1 EST555596 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD23D14 5' end, mRNA sequence.    34  0.003  4
BE432865|BE432865.1 EST399310 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG10E22, mRNA sequence.    34  0.003  4
AI771567|AI771567.1 EST252667 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED30G6, mRNA sequence.    34  0.004  4
BI930278|BI930278.1 EST550167 tomato flower, 8 mm to preanthesis buds Lycopersicon esculentum cDNA clone cTOC15D24 5' end, mRNA sequence.    34  0.004  4
BI935845|BI935845.1 EST555734 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD24O5 5' end, mRNA sequence.    34  0.004  4
AW091846|AW091846.1 EST285026 tomato mixed elicitor, BTI Lycopersicon esculentum cDNA clone cLET16H14, mRNA sequence.    34  0.004  4
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54638) RecName: Full=Acetylornithine deacetylase;          EC=...   405   0.0
U23957_1(U23957|pid:none) Dictyostelium discoideum P52D mRNA, co...   399   0.0
AB036420_1(AB036420|pid:none) Citrullus lanatus mRNA for DIP-1, ...   194   e-108
AF170086_1(AF170086|pid:none) Cucurbita pepo silverleaf whitefly...   194   e-103
CP001325_366(CP001325|pid:none) Micromonas sp. RCC299 chromosome...   195   e-101
AF360346_1(AF360346|pid:none) Arabidopsis thaliana putative N-ac...   181   e-101
AK101568_1(AK101568|pid:none) Oryza sativa Japonica Group cDNA c...   182   3e-97
CP000582_97(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ...   191   4e-97
AL021889_1(AL021889|pid:none) Arabidopsis thaliana DNA chromosom...   160   2e-92
FJ899850_1(FJ899850|pid:none) Populus maximowiczii x Populus nig...   146   9e-77
protein update 2009. 6.18
PSORT 

 psg: 0.64  gvh: 0.42  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VFC850 is cyt
5' end seq. ID VFC850F
5' end seq. 
>VFC850F.Seq
ATTAATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATT
AGATGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCA
AAATAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGC
TTTAACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGA
TCCAGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGG
AACTAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGA
TAAAACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGG
TAGAGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACT
TGCAACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGA
GAATGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCC
ATGTAAGAATGG----------
Length of 5' end seq. 612
3' end seq. ID VFC850Z
3' end seq. 
>VFC850Z.Seq
----------GATTCAGCAGATTCACAACCCAACCCATTGGTACTGGTGGTGCACAAACT
TGGAATTTAACAGCTCATGGTAAGAATATGCATAGTGCTATGCCATATAGAACTGTAAAC
TCTGTAGAGTTGGTCAACGAAGCATTGGCTGAGATTCAACGTCGTCTCTACATTGACTTC
AAACCACATCCAAAAGAAGCCGAATATAAATTCGATTGTTCATCAACAATGAAACCATTC
CAGGTGAGTCAACCATTTGTGGTGATATTCGTTTAACTCCATTCTATGATATGAAAGAAA
TGCGTGCAAAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCACTGAACTTCGTA
ATAGAGGTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAG
GTTCAGTCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACT
CTGATGGTTACAAAGCACTTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAG
TTGCAACTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTC
AAATTACTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAATATGCTTTATTAT
CTGATTTTAAAAATGCTATTAAAATTTTATCTCGTACAATNATTTATTAGAAAAAAATTA
AATTAAAATCCAATAAAACNCTTTTT
Length of 3' end seq. 736
Connected seq. ID VFC850P
Connected seq. 
>VFC850P.Seq
ATTAATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATT
AGATGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCA
AAATAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGC
TTTAACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGA
TCCAGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGG
AACTAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGA
TAAAACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGG
TAGAGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACT
TGCAACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGA
GAATGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCC
ATGTAAGAATGG----------GATTCAGCAGATTCACAACCCAACCCATTGGTACTGGT
GGTGCACAAACTTGGAATTTAACAGCTCATGGTAAGAATATGCATAGTGCTATGCCATAT
AGAACTGTAAACTCTGTAGAGTTGGTCAACGAAGCATTGGCTGAGATTCAACGTCGTCTC
TACATTGACTTCAAACCACATCCAAAAGAAGCCGAATATAAATTCGATTGTTCATCAACA
ATGAAACCATTCCAGGTGAGTCAACCATTTGTGGTGATATTCGTTTAACTCCATTCTATG
ATATGAAAGAAATGCGTGCAAAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCA
CTGAACTTCGTAATAGAGGTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTG
AACCAGTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTT
GTAAACTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTACTTCTGAAATTTTAGGTT
CATTAACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTG
GTTTCGATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAAT
ATGCTTTATTATCTGATTTTAAAAATGCTATTAAAATTTTATCTCGTACAATNATTTATT
AGAAAAAAATTAAATTAAAATCCAATAAAACNCTTTTT
Length of connected seq. 1348
Full length Seq ID -
Full length Seq. -
Length of full length seq. -