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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC780
Library VF
(Link to library)
Clone ID VFC780
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02098-1
Original site URL
Representative seq. ID VFC780P
(Link to Original site)
Representative DNA sequence 
>VFC780 (VFC780Q) /CSM/VF/VFC7-D/VFC780Q.Seq.d/
ATTTTCATTCCCATCATCATTACTTTTTTATTTCTCAACAATGACTTTCACTCTGCCATC
CACTGCAATCTGTCCAGGAGGAAATAGTAATAAAAATCAAATCTTTTTTAAACCCACTCC
ACCAGCAGCAGCACCAAAACCAGGAAAGGGAAGTCCTAGTTTTACAATCTAAACAAATAC
CAAAAGGTGTTTCACATTTATTAAATATTTAAATAAATTAAAAAAAGTTTTTCTATTTAA
TCTATAATAATTATAATAATAACAATAATAATAATGATAATAATAATAGATAATGGTGAT
AATTTCACAGCTTAAACATGTCTATTAAAAATTAAAATAAATCAAAAAACCAATATTTTT
TTTTTTTNGATNAAAATTTTNGGTNTTTTTTAAAAAAAAAAXXXXXXXXXXATTAAACAA
AACAAACAAACAAAAAACTAAACTAAATATTTGAAATGTCAACATCATCAGTCCCAAGTT
TAACTTATTTCCAAGGTCGTGGATTAGGTCAATTCTCTCGTGTTTTATTAAGTTATCTTG
GAATTCCATATGAAAATATTACAGTTACTGAAATTTCAGATGCCC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fhshhhyffisqq*lslchplqsvqeeivikiksflnplhqqqhqnqerevlvlqskqip
kgvshllni*in*kkffyliynnynnnnnnndnnnr*w**fhslnmsikn*NKSKNQYFF
FXDXNFXXFLKKK---

---LNKTNKQKTKLNI*nvniispkfnlfprswirsilscfiklswnsi*kyysy*nfrc
Translated Amino Acid sequence (All Frames) 
Frame A:
ifipiiitflflnndfhsaihcnlsrrk***ksnlf*thstssstktrkgks*fynlnky
qkvfhiy*ifk*ikksfsi*siiiiiitiiimiiiidngdnfta*tcllkikinqktnif
ffxxkixgxf*kk---

---ikqnkqtkn*tkylkcqhhqsqv*liskvvd*vnslvfy*vilefhmkilqllkfqm
p

Frame B:
fsfpssllfyfstmtftlpstaicpggnsnknqiffkptppaaapkpgkgspsfti*tnt
krcftfikylnklkkvflfnl**l***q********imviisqlkhvy*klk*ikkpiff
ffxxkfxvffkkk---

---LNKTNKQKTKLNI*nvniispkfnlfprswirsilscfiklswnsi*kyysy*nfrc

Frame C:
fhshhhyffisqq*lslchplqsvqeeivikiksflnplhqqqhqnqerevlvlqskqip
kgvshllni*in*kkffyliynnynnnnnnndnnnr*w**fhslnmsikn*NKSKNQYFF
FXDXNFXXFLKKK---

---*tkqtnkkln*ifemstssvpsltyfqgrglgqfsrvllsylgipyenitvteisda
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC780 (VFC780Q) /CSM/VF/VFC7-D/VFC780Q.Seq.d/                        434   e-121
VSJ677 (VSJ677Q) /CSM/VS/VSJ6-D/VSJ677Q.Seq.d/                        385   e-106
VSK219 (VSK219Q) /CSM/VS/VSK2-A/VSK219Q.Seq.d/                        274   1e-72
VSJ304 (VSJ304Q) /CSM/VS/VSJ3-A/VSJ304Q.Seq.d/                        274   1e-72
VSI418 (VSI418Q) /CSM/VS/VSI4-A/VSI418Q.Seq.d/                        274   1e-72
VSI291 (VSI291Q) /CSM/VS/VSI2-D/VSI291Q.Seq.d/                        274   1e-72
VSG748 (VSG748Q) /CSM/VS/VSG7-B/VSG748Q.Seq.d/                        274   1e-72
VSG306 (VSG306Q) /CSM/VS/VSG3-A/VSG306Q.Seq.d/                        274   1e-72
VSG280 (VSG280Q) /CSM/VS/VSG2-D/VSG280Q.Seq.d/                        274   1e-72
VSD893 (VSD893Q) /CSM/VS/VSD8-D/VSD893Q.Seq.d/                        274   1e-72
own update 2001.10.11
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   178  9e-56  5
AC138279|AC138279.1 Homo sapiens chromosome 11 clone RP11-475C5 map 11, LOW-PASS SEQUENCE SAMPLING.    40  0.030  3
AC111616|AC111616.3 Rattus norvegicus clone CH230-246J24, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    44  0.033  4
AP002958|AP002958.2 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-16H7.    40  0.052  3
AC021723|AC021723.11 Homo sapiens chromosome 11, clone RP11-313M3, complete sequence.    46  0.083  2
AL132976|AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1.    44  0.11  3
AG260509|AG260509.1 Lotus corniculatus var. japonicus DNA, clone:LjT50m17_sfi.    48  0.12  1
AC011980|AC011980.3 Homo sapiens clone RP11-16H7, WORKING DRAFT SEQUENCE, 11 unordered pieces.    40  0.19  3
AP002470|AP002470.1 Homo sapiens genomic DNA, chromosome 11q clone:RP11-369A24, WORKING DRAFT SEQUENCE, 16 unordered pieces.    40  0.29  2
AP005061|AP005061.3 Homo sapiens genomic DNA, chromosome 18 clone:RP11-419P8, complete sequence.    38  0.32  4
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556G3) RecName: Full=Putative glutathione S-transferase alpha-...    87   3e-16
(Q54VI4) RecName: Full=Putative glutathione S-transferase alpha-...    44   0.003
(Q09596) RecName: Full=Probable glutathione S-transferase 5;    ...    37   0.51
(Q54QV7) RecName: Full=Putative glutathione S-transferase alpha-...    37   0.51
protein update 2009. 2. 7
PSORT 

 psg: 0.67  gvh: 0.22  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for VFC780 is nuc
5' end seq. ID VFC780F
5' end seq. 
>VFC780F.Seq
ATTTTCATTCCCATCATCATTACTTTTTTATTTCTCAACAATGACTTTCACTCTGCCATC
CACTGCAATCTGTCCAGGAGGAAATAGTAATAAAAATCAAATCTTTTTTAAACCCACTCC
ACCAGCAGCAGCACCAAAACCAGGAAAGGGAAGTCCTAGTTTTACAATCTAAACAAATAC
CAAAAGGTGTTTCACATTTATTAAATATTTAAATAAATTAAAAAAAGTTTTTCTATTTAA
TCTATAATAATTATAATAATAACAATAATAATAATGATAATAATAATAGATAATGGTGAT
AATTTCACAGCTTAAACATGTCTATTAAAAATTAAAATAAATCAAAAAACCAATATTTTT
TTTTTTTNGATNAAAATTTTNGGTNTTTTTTAAAAAAAAAA----------
Length of 5' end seq. 401
3' end seq. ID VFC780Z
3' end seq. 
>VFC780Z.Seq
----------ATTAAACAAAACAAACAAACAAAAAACTAAACTAAATATTTGAAATGTCA
ACATCATCAGTCCCAAGTTTAACTTATTTCCAAGGTCGTGGATTAGGTCAATTCTCTCGT
GTTTTATTAAGTTATCTTGGAATTCCATATGAAAATATTACAGTTACTGAAATTTCAGAT
GCCC
Length of 3' end seq. 174
Connected seq. ID VFC780P
Connected seq. 
>VFC780P.Seq
ATTTTCATTCCCATCATCATTACTTTTTTATTTCTCAACAATGACTTTCACTCTGCCATC
CACTGCAATCTGTCCAGGAGGAAATAGTAATAAAAATCAAATCTTTTTTAAACCCACTCC
ACCAGCAGCAGCACCAAAACCAGGAAAGGGAAGTCCTAGTTTTACAATCTAAACAAATAC
CAAAAGGTGTTTCACATTTATTAAATATTTAAATAAATTAAAAAAAGTTTTTCTATTTAA
TCTATAATAATTATAATAATAACAATAATAATAATGATAATAATAATAGATAATGGTGAT
AATTTCACAGCTTAAACATGTCTATTAAAAATTAAAATAAATCAAAAAACCAATATTTTT
TTTTTTTNGATNAAAATTTTNGGTNTTTTTTAAAAAAAAAA----------ATTAAACAA
AACAAACAAACAAAAAACTAAACTAAATATTTGAAATGTCAACATCATCAGTCCCAAGTT
TAACTTATTTCCAAGGTCGTGGATTAGGTCAATTCTCTCGTGTTTTATTAAGTTATCTTG
GAATTCCATATGAAAATATTACAGTTACTGAAATTTCAGATGCCC
Length of connected seq. 575
Full length Seq ID -
Full length Seq. -
Length of full length seq. -