VFC716
Library VF
(Link to library)
Clone ID VFC716
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16504-1
Original site URL
Representative seq. ID VFC716E
(Link to Original site)
Representative DNA sequence
>VFC716 (VFC716Q) /CSM/VF/VFC7-A/VFC716Q.Seq.d/
ATTTTATTTTATTTTATTTTTATTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGA
AGAAATAAAAGAAACTGTTGAAAAAAAAATAAAGAAAAAAAGTATTTAAATGATTATAAA
ATAATTTCTGAAGGTAATAATATTAAAGTTTTACAAAAAAAAGATTTCAAACCAAAATTT
TCATTGGTATCATATAAAAATTATGAACAAAATTTTGATTTTGAAAATGCTAAAATTGTT
TCAACCAATTTTGCCATCGATCGTCATATAAAGATGAAGAATCCACCAGATCCATTTGTA
TTTATTAAAATGCCATCTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTATGAAAAT
GAAGGTTATAAGGATATTCCAGTATGGATTACACCATGTTCAGCATTTATGAGATACATT
AAATCGTATCCAATTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACC
AATAGATTCTTATCAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGT
GAATCATCGATGGAAGTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAA
ACTAGAAGTTGGAGTCAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTA
GTTTATGCTTATATAATCTATGGTGGTAGTTATAAACCATACATTGATCAAATGAATAAA
TTTAATCCTGGATTAAATATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCA
ATTAATCGTGATGATGCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAA
TATGATGTTTTAATTGATTACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTA
CCATGAAAATAATAATAATAATAATAATAATAATTATATAAATTACATAAAGGTTTCACT
ATTGGTGTTTTAATCCGGTATAAATAAAATTCTAAAAATAACAAAATAAAAAACTATATA
AAA
sequence update 2001. 6. 9
Translated Amino Acid sequence
ilfyfifif*rnnfl*kkngrnkrnc*KKNKEKKYLNDYKIISEGNNIKVLQKKDFKPKF
SLVSYKNYEQNFDFENAKIVSTNFAIDRHIKMKNPPDPFVFIKMPSSKLVQSQLKLYYEN
EGYKDIPVWITPCSAFMRYIKSYPIVGTVTETMEKKKGFTNRFLSTSETKASVSVGFFGC
ESSMEVTSGYEYEDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNK
FNPGLNIKFFREDKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGL
P*k********lyklhkgftigvliryk*nsknnkiknyik


Translated Amino Acid sequence (All Frames)
Frame A:
ilfyfifif*rnnfl*kkngrnkrnc*KKNKEKKYLNDYKIISEGNNIKVLQKKDFKPKF
SLVSYKNYEQNFDFENAKIVSTNFAIDRHIKMKNPPDPFVFIKMPSSKLVQSQLKLYYEN
EGYKDIPVWITPCSAFMRYIKSYPIVGTVTETMEKKKGFTNRFLSTSETKASVSVGFFGC
ESSMEVTSGYEYEDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNK
FNPGLNIKFFREDKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGL
P*k********lyklhkgftigvliryk*nsknnkiknyik


Frame B:
fyfilflffkeiifykkrmeeiketvekkikkksi*miik*flkviilkfykkkisnqnf
hwyhikimnkililkmlklfqpilpsivi*r*rihqihlyllkchlqslfkvs*nftmkm
kvirifqyglhhvqhl*dtlnriqllel*qrqwkrkkvspidsyqlvkpkhqfqsdslvv
nhrwklqvvmnmktllhlkklevgvkl*mkvlilfiktf*fmli*smvvvinhtlik*in
lild*isnslekinvsflyqlivmmpslfvikiihgiqlnmmf*litwvkikingflvvy
hennnnnnnnnyinyikvsllvf*sginkilkitk*kti*


Frame C:
filfyfyflkk*ffikkewkk*kkllkkk*rkkvfk*l*nnf*r**y*sftkkrfqtkif
igii*kl*tkf*f*kc*ncfnqfchrssykdeestrsiciy*naifkacsksvktll*k*
rl*gyssmdytmfsiyeih*ivsncwncnrdngkekrfhq*ilin**nqsisfsrilwl*
iidgsykwl*i*rhcyi*rn*klesnfk*rflyclskrfslclynlww*l*tih*sne*i
*swikyqil*rr*mylfctn*s**clhsslsr*ymgss*i*cfn*llgsksr*mvfwwft
mkiiiiiiiiii*it*rfhywcfnpv*ikf*k*qnkklyk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/ 1550 0.0
VFC716 (VFC716Q) /CSM/VF/VFC7-A/VFC716Q.Seq.d/ 1550 0.0
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/ 1544 0.0
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/ 1542 0.0
VHP648 (VHP648Q) /CSM/VH/VHP6-B/VHP648Q.Seq.d/ 1542 0.0
VFJ763 (VFJ763Q) /CSM/VF/VFJ7-C/VFJ763Q.Seq.d/ 1538 0.0
VFI758 (VFI758Q) /CSM/VF/VFI7-C/VFI758Q.Seq.d/ 1538 0.0
VSF255 (VSF255Q) /CSM/VS/VSF2-C/VSF255Q.Seq.d/ 1530 0.0
VSF487 (VSF487Q) /CSM/VS/VSF4-D/VSF487Q.Seq.d/ 1524 0.0
VHB403 (VHB403Q) /CSM/VH/VHB4-A/VHB403Q.Seq.d/ 1522 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds. 1298 0.0 5
M19469|M19469.1 Dictyostelium discoideum 109 gene 3, complete cds. 327 e-108 2
X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore germination protein. 86 1e-51 6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.028 12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.27 12
BQ596151|BQ596151.1 PfESToab29h06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 40 0.27 2
BQ633152|BQ633152.1 PfESToab38d10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 40 0.28 2
AC095627|AC095627.7 Rattus norvegicus clone CH230-8N23, WORKING DRAFT SEQUENCE, 2 unordered pieces. 40 0.32 2
CA930567|CA930567.1 MTU4CA.P24.B01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence. 34 0.84 2
CA930485|CA930485.1 MTU4CA.P23.B04 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence. 34 0.84 2
dna update 2003. 9.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso... 67 1e-09
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso... 50 2e-04
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete... 42 0.026
CP001083_1669(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 38 0.65
DQ790236_1(DQ790236|pid:none) Champereia manillana acetyl co-A c... 37 0.85
DQ790237_1(DQ790237|pid:none) Agonandra macrocarpa acetyl co-A c... 37 1.5
AE001362_167(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.5
AY332625_22(AY332625|pid:none) Campylobacter jejuni serotype HS:... 35 3.2
CP000932_787(CP000932|pid:none) Campylobacter lari RM2100, compl... 35 5.5
BX545858_22(BX545858|pid:none) Campylobacter jejuni. 35 5.5
protein update 2009. 7.10
PSORT

psg: 0.60 gvh: 0.11 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for VFC716 is nuc

5' end seq. ID VFC716F
5' end seq.
>VFC716F.Seq
ATTTTATTTTATTTTATTTTTATTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGA
AGAAATAAAAGAAACTGTTGAAAAAAAAATAAAGAAAAAAAGTATTTAAATGATTATAAA
ATAATTTCTGAAGGTAATAATATTAAAGTTTTACAAAAAAAAGATTTCAAACCAAAATTT
TCATTGGTATCATATAAAAATTATGAACAAAATTTTGATTTTGAAAATGCTAAAATTGTT
TCAACCAATTTTGCCATCGATCGTCATATAAAGATGAAGAATCCACCAGATCCATTTGTA
TTTATTAAAATGCCATCTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTATGAAAAT
GAAGGTTATAAGGATATTCCAGTATGGATTACACCATGTTCAGCATTTATGAGATACATT
AAATCGTATCCAATTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACC
AATAGATTCTTATCAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGT
GAATCATCGATGGAAGTTACAAGTGGTT----------
Length of 5' end seq. 568
3' end seq. ID VFC716Z
3' end seq.
>VFC716Z.Seq
----------CCATCTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTATGAAAATGA
AGGTTATAAGGATATTCCAGTATGGATTACACCATGTTCAGCATTTATGAGATACATTAA
ATCGTATCCAATTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACCAA
TAGATTCTTATCAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGTGA
ATCATCGATGGAAGTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAAAC
TAGAAGTTGGAGTCAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTAGT
TTATGCTTATATAATCTATGGTGGTAGTTATAAACCATACATTGATCAAATGAATAAATT
TAATCCTGGATTAAATATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAAT
TAATCGTGATGATGCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATA
TGATGTTTTAATTGATTACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACC
ATGAAAATAATAATAATAATAATAATAATAATTATATAAATTACATAAAGGTTTCACTAT
TGGTGTTTTAATCCGGTATAAATAAAATTCTAAAAATAACAAAATAAAAAACTATATAAA
A
Length of 3' end seq. 711
Connected seq. ID VFC716P
Connected seq.
>VFC716P.Seq
ATTTTATTTTATTTTATTTTTATTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGA
AGAAATAAAAGAAACTGTTGAAAAAAAAATAAAGAAAAAAAGTATTTAAATGATTATAAA
ATAATTTCTGAAGGTAATAATATTAAAGTTTTACAAAAAAAAGATTTCAAACCAAAATTT
TCATTGGTATCATATAAAAATTATGAACAAAATTTTGATTTTGAAAATGCTAAAATTGTT
TCAACCAATTTTGCCATCGATCGTCATATAAAGATGAAGAATCCACCAGATCCATTTGTA
TTTATTAAAATGCCATCTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTATGAAAAT
GAAGGTTATAAGGATATTCCAGTATGGATTACACCATGTTCAGCATTTATGAGATACATT
AAATCGTATCCAATTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACC
AATAGATTCTTATCAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGT
GAATCATCGATGGAAGTTACAAGTGGTT----------CCATCTTCAAAGCTTGTTCAAA
GTCAGTTAAAACTTTACTATGAAAATGAAGGTTATAAGGATATTCCAGTATGGATTACAC
CATGTTCAGCATTTATGAGATACATTAAATCGTATCCAATTGTTGGAACTGTAACAGAGA
CAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTGAAACCAAAGCAT
CAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAAGTGGTTATGAAT
ATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTTTAAATGAAGGTT
CTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATGGTGGTAGTTATA
AACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCAAATTCTTTAGAG
AAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCACTCTTCGTTATC
AAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACTTGGGTCAAAATC
AAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAATAATAATAATAATAAT
TATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCGGTATAAATAAAATTCTA
AAAATAACAAAATAAAAAACTATATAAAA
Length of connected seq. 1279
Full length Seq ID VFC716E
Full length Seq.
>VFC716E.Seq
ATTTTATTTTATTTTATTTTTATTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGA
AGAAATAAAAGAAACTGTTGAAAAAAAAATAAAGAAAAAAAGTATTTAAATGATTATAAA
ATAATTTCTGAAGGTAATAATATTAAAGTTTTACAAAAAAAAGATTTCAAACCAAAATTT
TCATTGGTATCATATAAAAATTATGAACAAAATTTTGATTTTGAAAATGCTAAAATTGTT
TCAACCAATTTTGCCATCGATCGTCATATAAAGATGAAGAATCCACCAGATCCATTTGTA
TTTATTAAAATGCCATCTTCAAAGCTTGTTCAAAGTCAGTTAAAACTTTACTATGAAAAT
GAAGGTTATAAGGATATTCCAGTATGGATTACACCATGTTCAGCATTTATGAGATACATT
AAATCGTATCCAATTGTTGGAACTGTAACAGAGACAATGGAAAAGAAAAAAGGTTTCACC
AATAGATTCTTATCAACTAGTGAAACCAAAGCATCAGTTTCAGTCGGATTCTTTGGTTGT
GAATCATCGATGGAAGTTACAAGTGGTTATGAATATGAAGACACTGTTACATCTGAAGAA
ACTAGAAGTTGGAGTCAAACTTTAAATGAAGGTTCTTATATTGTTTATCAAAACGTTTTA
GTTTATGCTTATATAATCTATGGTGGTAGTTATAAACCATACATTGATCAAATGAATAAA
TTTAATCCTGGATTAAATATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCA
ATTAATCGTGATGATGCCTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAA
TATGATGTTTTAATTGATTACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTA
CCATGAAAATAATAATAATAATAATAATAATAATTATATAAATTACATAAAGGTTTCACT
ATTGGTGTTTTAATCCGGTATAAATAAAATTCTAAAAATAACAAAATAAAAAACTATATA
AAA
Length of full length seq. 1023