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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC706
Library VF
(Link to library)
Clone ID VFC706
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11840-1
Original site URL
Representative seq. ID VFC706P
(Link to Original site)
Representative DNA sequence 
>VFC706 (VFC706Q) /CSM/VF/VFC7-A/VFC706Q.Seq.d/
CCAACAAACTTATCCGTAATAGAATATGCATTAATAACAATCTATTTAAAAAAAAGAAAT
AAAGTAATAAAAACGAGATTATATTTTACATTATTATGTGCAGTAGTATTTTTAGCATGC
CAAGGTTATGAATATTTTTTTGCACCATTTAGTATGAATGACGGAATATATGGATCATTA
TTTTTCTTATTAACAGGATTTCATGGATTTCATGTATTAGTAGGAAGTATATTAATAGGA
ATAATCACAATAAGATTTATAGTAGGAAATTTCAATCTATTAAATGTAGGTACAAATTTT
CAAATCTATAAAAATAAATCAACAGGATTTGCATGTACATTATTTTATTGGCATTTCGTT
GATATTGTTTGGATTTTTCTATATATTGTAATATATTGGTGGGGGAAGTCGATAAAAATT
AAACAGTATTATTAACTGATATGTTAATAACTAAAAACAATAAGAAGAAAATTAAAAAAA
TCTCGAAAAGAGGAACTAATAAAGCCTTCTTACAAAAATTGTTAAGTGTTGAAAAAXXXX
XXXXXXATGTTTTAGAGAAAAAAGAAGGAATAGATGATGCTGAAGTTTATAAGTTTATAA
AATTAGATTTTGGTGAAAAAATGGAGTTAAAATTAGAGAAATTTTATGATNTGAATAGAG
AAAGAAGATTCCGAGTAAAAAAATTAAGCCAATCAAAACTATATGAGTTTGAAAAAGCTG
CATTGAAAGGTATCGGTTTTGATTGTTTTATGCTTATAGTAGGAATAATCATATTTTTAG
CATCTTCTCCATATTTATTTTCACAATTACCTTGGAGAGTAAAATATTCGCTTCATAATA
CTTGGTATCATAATCTACTTGAAGTCATAGATGTACTTTTTAGTATGCCTAAAGTAATAA
ACTTAGAATGGCTATATTTACAAGCTATGTGGGAGGGAGAACTGACAGTACTAAAGATAA
GAGGTGGTATATCAGTCCTTACCGCAATAGAAACTATTATGTCTGTAATGTCTAACTATA
AAGATTTATCCCAGACATCCCAGATAATAAATTACTTAGCAAATTTTAGTTTTGACATAT
ATTAATTTATGTCAAACTNAACNATAAATAAAAAAAAAATAAAACAAAAAAANAAAATTT
TAGAAATATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nklirnricinnnlfkkkk*snkneiifyiimcssifsmprl*iffcti*ye*rniwiii
flinriswiscisrkyinrnnhnkiysrkfqsikcrykfsnl*k*inricmyiillafr*
ycldfsiycnilvgevdkn*TVLLTDMLITKNNKKKIKKISKRGTNKAFLQKLLSVEK--
-

---VLEKKEGIDDAEVYKFIKLDFGEKMELKLEKFYDXNRERRFRVKKLSQSKLYEFEKA
ALKGIGFDCFMLIVGIIIFLASSPYLFSQLPWRVKYSLHNTWYHNLLEVIDVLFSMPKVI
NLEWLYLQAMWEGELTVLKIRGGISVLTAIETIMSVMSNYKDLSQTSQIINYLANFSFDI
Y*fmsnxtinkkkikqkxkilei
Translated Amino Acid sequence (All Frames) 
Frame A:
ptnlsvieyalitiylkkrnkviktrlyftllcavvflacqgyeyffapfsmndgiygsl
fflltgfhgfhvlvgsiligiitirfivgnfnllnvgtnfqiyknkstgfactlfywhfv
divwiflyiviywwgksikikqyy*lic**lktirrklkksrkeelikpsyknc*vlk--
-

---mf*rkkke*mmlkfisl*n*ilvkkws*n*rnfmx*iekedse*kn*anqnymslkk
lh*kvsvlivlcl**e*syf*hllhiyfhnylge*nirfiilgiiiylks*myflvclk*
*t*ngyiyklcgren*qy*r*evvyqslpq*kllcl*cltikiyprhpr**it*qilvlt
yinlcqtxx*ikkk*nkkxkf*ky

Frame B:
qqtyp**nmh**qsi*kkeik**krdyilhyyvq*yf*hakvmniflhhlv*mteymdhy
fsy*qdfmdfmy**evy**e*sq*dl**eisiy*m*vqifksikinqqdlhvhyfigisl
ilfgffyil*yigggsr*klnsiin*yvnn*kq*een*knlekrn**slltkivkc*k--
-

---cfrekrrnr*c*sl*vykirfw*kngvkireil*xe*rkkipskkikpikti*v*ks
cieryrf*lfyaysrnnhifsifsififtitleskifas*ylvs*st*shrctf*ya*sn
klrmaiftsyvggrtdstkdkrwyispyrnrnyyvcnv*l*rfipdipdnkllskf*f*h
iliyvklnxk*kknktkkxnfrni

Frame C:
nklirnricinnnlfkkkk*snkneiifyiimcssifsmprl*iffcti*ye*rniwiii
flinriswiscisrkyinrnnhnkiysrkfqsikcrykfsnl*k*inricmyiillafr*
ycldfsiycnilvgevdkn*TVLLTDMLITKNNKKKIKKISKRGTNKAFLQKLLSVEK--
-

---VLEKKEGIDDAEVYKFIKLDFGEKMELKLEKFYDXNRERRFRVKKLSQSKLYEFEKA
ALKGIGFDCFMLIVGIIIFLASSPYLFSQLPWRVKYSLHNTWYHNLLEVIDVLFSMPKVI
NLEWLYLQAMWEGELTVLKIRGGISVLTAIETIMSVMSNYKDLSQTSQIINYLANFSFDI
Y*fmsnxtinkkkikqkxkilei
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC706 (VFC706Q) /CSM/VF/VFC7-A/VFC706Q.Seq.d/                       1949   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1039   0.0
VHK641 (VHK641Q) /CSM/VH/VHK6-B/VHK641Q.Seq.d/                       1023   0.0
AFD890 (AFD890Q) /CSM/AF/AFD8-D/AFD890Q.Seq.d/                       1023   0.0
CHM219 (CHM219Q) /CSM/CH/CHM2-A/CHM219Q.Seq.d/                       1017   0.0
VHI704 (VHI704Q) /CSM/VH/VHI7-A/VHI704Q.Seq.d/                        912   0.0
VFL138 (VFL138Q) /CSM/VF/VFL1-B/VFL138Q.Seq.d/                        864   0.0
VHN820 (VHN820Q) /CSM/VH/VHN8-A/VHN820Q.Seq.d/                        841   0.0
VSC452 (VSC452Q) /CSM/VS/VSC4-C/VSC452Q.Seq.d/                        825   0.0
CFK269 (CFK269Q) /CSM/CF/CFK2-C/CFK269Q.Seq.d/                        785   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   815  0.0  8
D16579|D16579.1 Dictyostelium discoideum mitochondrial DNA for NADH dehydrogenase subunits and cytochrome oxidase subunit ,complete cds.   789  0.0  7
Z17208|Z17208.1 Pyura stolonifera mitochondrial gene for cytochrome oxidase subunit  III.    42  6e-04  2
U19028|U19028.1 Saccharomyces cerevisiae chromosome XII cosmid 8300.    38  0.006  4
Z29482|Z29482.1 C.crispus mitochondrial gene for cytochrome c oxidase subunit 3.    52  0.016  1
AJ493124|AJ493124.1 Varroa destructor complete mitochondrial genome.    42  0.018  5
BX255952|BX255952.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-267P8.    44  0.018  6
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36  0.038  12
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.        42  0.054  11
Z47547|Z47547.1 Chondrus crispus complete mitochondrial genome.    52  0.059  3
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O21050) RecName: Full=Uncharacterized mitochondrial protein Mp0...   354   3e-96
AY700145_33(AY700145|pid:none) Polysphondylium pallidum mitochon...   179   2e-43
EU275726_4(EU275726|pid:none) Polysphondylium pallidum strain PN...   179   2e-43
EU275727_5(EU275727|pid:none) Dictyostelium fasciculatum strain ...   170   1e-40
DQ336395_5(DQ336395|pid:none) Dictyostelium citrinum mitochondri...   117   1e-24
(Q2LCQ0) RecName: Full=Uncharacterized mitochondrial protein Mp0...   116   1e-24
AM292321_11(AM292321|pid:none) Microcosmus sulcatus complete mit...    92   3e-17
DQ365900_35(DQ365900|pid:none) Oltmannsiellopsis viridis mitocho...    92   3e-17
(Q37600) RecName: Full=Cytochrome c oxidase subunit 3;          ...    92   4e-17
AY728234_7(AY728234|pid:none) Hydromantes brunus mitochondrion, ...    91   6e-17
protein update 2009. 6.18
PSORT 

 psg: 0.23  gvh: 0.33  alm: 0.19  top: 0.80  tms: 0.07  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFC706 is nuc
5' end seq. ID VFC706F
5' end seq. 
>VFC706F.Seq
CCAACAAACTTATCCGTAATAGAATATGCATTAATAACAATCTATTTAAAAAAAAGAAAT
AAAGTAATAAAAACGAGATTATATTTTACATTATTATGTGCAGTAGTATTTTTAGCATGC
CAAGGTTATGAATATTTTTTTGCACCATTTAGTATGAATGACGGAATATATGGATCATTA
TTTTTCTTATTAACAGGATTTCATGGATTTCATGTATTAGTAGGAAGTATATTAATAGGA
ATAATCACAATAAGATTTATAGTAGGAAATTTCAATCTATTAAATGTAGGTACAAATTTT
CAAATCTATAAAAATAAATCAACAGGATTTGCATGTACATTATTTTATTGGCATTTCGTT
GATATTGTTTGGATTTTTCTATATATTGTAATATATTGGTGGGGGAAGTCGATAAAAATT
AAACAGTATTATTAACTGATATGTTAATAACTAAAAACAATAAGAAGAAAATTAAAAAAA
TCTCGAAAAGAGGAACTAATAAAGCCTTCTTACAAAAATTGTTAAGTGTTGAAAAA----
------
Length of 5' end seq. 536
3' end seq. ID VFC706Z
3' end seq. 
>VFC706Z.Seq
----------ATGTTTTAGAGAAAAAAGAAGGAATAGATGATGCTGAAGTTTATAAGTTT
ATAAAATTAGATTTTGGTGAAAAAATGGAGTTAAAATTAGAGAAATTTTATGATNTGAAT
AGAGAAAGAAGATTCCGAGTAAAAAAATTAAGCCAATCAAAACTATATGAGTTTGAAAAA
GCTGCATTGAAAGGTATCGGTTTTGATTGTTTTATGCTTATAGTAGGAATAATCATATTT
TTAGCATCTTCTCCATATTTATTTTCACAATTACCTTGGAGAGTAAAATATTCGCTTCAT
AATACTTGGTATCATAATCTACTTGAAGTCATAGATGTACTTTTTAGTATGCCTAAAGTA
ATAAACTTAGAATGGCTATATTTACAAGCTATGTGGGAGGGAGAACTGACAGTACTAAAG
ATAAGAGGTGGTATATCAGTCCTTACCGCAATAGAAACTATTATGTCTGTAATGTCTAAC
TATAAAGATTTATCCCAGACATCCCAGATAATAAATTACTTAGCAAATTTTAGTTTTGAC
ATATATTAATTTATGTCAAACTNAACNATAAATAAAAAAAAAATAAAACAAAAAAANAAA
ATTTTAGAAATATA
Length of 3' end seq. 604
Connected seq. ID VFC706P
Connected seq. 
>VFC706P.Seq
CCAACAAACTTATCCGTAATAGAATATGCATTAATAACAATCTATTTAAAAAAAAGAAAT
AAAGTAATAAAAACGAGATTATATTTTACATTATTATGTGCAGTAGTATTTTTAGCATGC
CAAGGTTATGAATATTTTTTTGCACCATTTAGTATGAATGACGGAATATATGGATCATTA
TTTTTCTTATTAACAGGATTTCATGGATTTCATGTATTAGTAGGAAGTATATTAATAGGA
ATAATCACAATAAGATTTATAGTAGGAAATTTCAATCTATTAAATGTAGGTACAAATTTT
CAAATCTATAAAAATAAATCAACAGGATTTGCATGTACATTATTTTATTGGCATTTCGTT
GATATTGTTTGGATTTTTCTATATATTGTAATATATTGGTGGGGGAAGTCGATAAAAATT
AAACAGTATTATTAACTGATATGTTAATAACTAAAAACAATAAGAAGAAAATTAAAAAAA
TCTCGAAAAGAGGAACTAATAAAGCCTTCTTACAAAAATTGTTAAGTGTTGAAAAA----
------ATGTTTTAGAGAAAAAAGAAGGAATAGATGATGCTGAAGTTTATAAGTTTATAA
AATTAGATTTTGGTGAAAAAATGGAGTTAAAATTAGAGAAATTTTATGATNTGAATAGAG
AAAGAAGATTCCGAGTAAAAAAATTAAGCCAATCAAAACTATATGAGTTTGAAAAAGCTG
CATTGAAAGGTATCGGTTTTGATTGTTTTATGCTTATAGTAGGAATAATCATATTTTTAG
CATCTTCTCCATATTTATTTTCACAATTACCTTGGAGAGTAAAATATTCGCTTCATAATA
CTTGGTATCATAATCTACTTGAAGTCATAGATGTACTTTTTAGTATGCCTAAAGTAATAA
ACTTAGAATGGCTATATTTACAAGCTATGTGGGAGGGAGAACTGACAGTACTAAAGATAA
GAGGTGGTATATCAGTCCTTACCGCAATAGAAACTATTATGTCTGTAATGTCTAACTATA
AAGATTTATCCCAGACATCCCAGATAATAAATTACTTAGCAAATTTTAGTTTTGACATAT
ATTAATTTATGTCAAACTNAACNATAAATAAAAAAAAAATAAAACAAAAAAANAAAATTT
TAGAAATATA
Length of connected seq. 1140
Full length Seq ID -
Full length Seq. -
Length of full length seq. -