>VFC623 (VFC623Q) /CSM/VF/VFC6-A/VFC623Q.Seq.d/
XXXXXXXXXXTCATNCAAAGAGATCACTTCATATGTTNCAAGAGGGTAACCAAAGAATTT
TGGTGNTCAATTATNTGATGATCCNATCATTCATAGTCATTTAANTGAATTANATAGTAA
TCNTCTTGAACAANATTTATGTCGTATNATTGAACCATTCTCAAGGGTTGAAATTTCACA
TATTGCAGCATTTATTGATTTACCAGTTGATGTTGTTGAAAGAAAATTATCACTTATGAT
CCTTGATAAGAAATATAATGGTATCCTCGATCAAGGTACTGGTACTTTAATTGTATTTGA
AGAACAAAAAGNAAGATAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTC
GTGTTGTTGATTNACTTTA

---xkeitsyvxrg*PKNFGXQLXDDPIIHSHLXELXSNXLEQXLCRXIEPFSRVEISHI
AAFIDLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKXR*ii*lffrnywcfksc
c*xtl

Frame A:
---hxkrslhmxqegnqrilvxnyxmixsfivi*xnxivixlnxiyvvxlnhsqglkfhi
lqhlliyqlmllkenyhl*slirnimvssikvlvl*lylknkkxdklfncsletigalsr
vvdxl


Frame B:
---xqrdhficxkrvtkefwxsix**sxhs*sfx*ix**ss*txfmsyx*tilkg*nfty
csiy*fts*cc*kkiitydp**ei*wyprsrywyfnci*rtkxkinylivl*kllvl*vv
llixf


Frame C:
---xkeitsyvxrg*PKNFGXQLXDDPIIHSHLXELXSNXLEQXLCRXIEPFSRVEISHI
AAFIDLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKXR*ii*lffrnywcfksc
c*xtl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC623 (VFC623Q) /CSM/VF/VFC6-A/VFC623Q.Seq.d/                        660   0.0
VSA514 (VSA514Q) /CSM/VS/VSA5-A/VSA514Q.Seq.d/                        587   e-167
VFH786 (VFH786Q) /CSM/VF/VFH7-D/VFH786Q.Seq.d/                        587   e-167
VFF145 (VFF145Q) /CSM/VF/VFF1-B/VFF145Q.Seq.d/                        587   e-167
VFE589 (VFE589Q) /CSM/VF/VFE5-D/VFE589Q.Seq.d/                        587   e-167
SLG702 (SLG702Q) /CSM/SL/SLG7-A/SLG702Q.Seq.d/                        587   e-167
SLF270 (SLF270Q) /CSM/SL/SLF2-C/SLF270Q.Seq.d/                        587   e-167
SFI676 (SFI676Q) /CSM/SF/SFI6-D/SFI676Q.Seq.d/                        587   e-167
SFI670 (SFI670Q) /CSM/SF/SFI6-C/SFI670Q.Seq.d/                        587   e-167
SFB566 (SFB566Q) /CSM/SF/SFB5-C/SFB566Q.Seq.d/                        587   e-167

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ412650|BQ412650.1 GA__Ed0060G10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0060G10r, mRNA sequence.    44  0.043  2
U32174|U32174.1 Dictyostelium discoideum spore lysis A (splA) gene, complete cds.    30  0.055  4
AC122060|AC122060.2 Mus musculus chromosome UNK clone RP24-468P4, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.18  4
AC096032|AC096032.6 Rattus norvegicus clone CH230-37D13, WORKING DRAFT SEQUENCE, 4 unordered pieces.    38  0.19  2
AC135413|AC135413.10 Medicago truncatula clone mth2-16n19, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  0.27  2
AW828601|AW828601.1 ra71g04.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:T05A10.5 CE13189 TESTES-SPECIFIC PROTEIN LIKE ;, mRNA sequence.    46  0.31  1
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    36  0.50  3
AC125272|AC125272.2 Mus musculus clone RP24-155E2, LOW-PASS SEQUENCE SAMPLING.    48  0.60  2
BI324562|BI324562.1 rk85g04.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5', mRNA sequence.    44  1.2  1
AI728024|0    44  1.2  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UB5) RecName: Full=26S proteasome non-ATPase regulatory subu...   147   7e-40
AM424416_1(AM424416|pid:none) Vitis vinifera contig VV78X196128....   111   7e-24
EF146969_1(EF146969|pid:none) Populus trichocarpa clone WS01225_...   111   9e-24
AY230837_1(AY230837|pid:none) Arabidopsis thaliana 26S proteasom...   110   1e-23
AF083890_1(AF083890|pid:none) Arabidopsis thaliana 19S proteosom...   110   1e-23
AY230834_1(AY230834|pid:none) Arabidopsis thaliana 26S proteasom...   110   1e-23
A86414(A86414) hypothetical protein F28N24.15 - Arabidopsis thal...   110   1e-23
EU969379_1(EU969379|pid:none) Zea mays clone 329471 26S proteaso...   110   2e-23
AK064788_1(AK064788|pid:none) Oryza sativa Japonica Group cDNA c...   110   2e-23
BT053774_1(BT053774|pid:none) Zea mays full-length cDNA clone ZM...   110   2e-23

 psg: 0.75  gvh: 0.44  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFC623 is cyt

>VFC623Z.Seq
----------TCATNCAAAGAGATCACTTCATATGTTNCAAGAGGGTAACCAAAGAATTT
TGGTGNTCAATTATNTGATGATCCNATCATTCATAGTCATTTAANTGAATTANATAGTAA
TCNTCTTGAACAANATTTATGTCGTATNATTGAACCATTCTCAAGGGTTGAAATTTCACA
TATTGCAGCATTTATTGATTTACCAGTTGATGTTGTTGAAAGAAAATTATCACTTATGAT
CCTTGATAAGAAATATAATGGTATCCTCGATCAAGGTACTGGTACTTTAATTGTATTTGA
AGAACAAAAAGNAAGATAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTC
GTGTTGTTGATTNACTTTA