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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC608
Library VF
(Link to library)
Clone ID VFC608
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15776-1
Original site URL
Representative seq. ID VFC608P
(Link to Original site)
Representative DNA sequence 
>VFC608 (VFC608Q) /CSM/VF/VFC6-A/VFC608Q.Seq.d/
ATTATAATTGTTATATATAACAATGGCAGAAGAAGGTGCAACAACAACATGTCCAGAAAA
TAGGGTTATAACAGGTAGTGATTTATTAAGCTTTAATGAAAACATTACTAATGAAAATTT
TAAACCTGAATTATTAAAAAGAACAGATTTAAAATTATCAACCTCAAATGGTTTTAAAGT
TACAAATGTTTTAACAAAAGAAGAATGTTTACATTTTATTGAAGAAAGTGAAAGAAAAGG
TTATGTTTCAATTGAAAAAGAATTTCCAACTGGATATCGTAATAATTTAAGATATTTAGG
AAAGAGTGATAAATTATCAGATATTTTATGGGAAAGATTAGAAGCAATTTTTAGAGAGAG
TGATTTGGAAGGTGTTAGACCTTATGGTTTCGATCAAAAGGGAGTTTGGATTCCAATTGG
TATTGATAATTGTTTTACATTTAGCAAATATTTACCAGGTAGTAGATTCAAGGCACATTA
TGATGCAGTATTTGCAGACAACCCAGATAGACGTTCAATTTATACCATTCAAATTTATTT
AAACGATGGATTTAAAXXXXXXXXXXTTCAAAGGAAAAGGATGAGAAAGATCTTGAGTCT
GCAATTTCGTTATATGTAAAGGCTCAAATGTTATTGACGGGTTATCCATCAATTGATGCA
ATCACTCAAAAGATAAAGAATATGAATATTTCAGTGACATCACCATTGAGAAAGAAACCA
TTGGTGACACTATCAACCATACCAGAGGTGCAACTATTCGATATTTTAGTGCTATTGAAA
CCAATTGATTTGGGTAGATTAAGGGTCACCAGTAAGTACTTTGCAACCATCGTGGCAAAG
GATTCACTTTGGAGAAGAATTTATATTCGTGATTTCTCAATGGAGGCATTCAATTTTGAA
AAGAATTACGTATTGAATTTCAAAGTTAATTCAATCCACGAATCAATTGTTAAATCTAGT
AAATCAAAACCAACCAAAATGGATGTCAAGAGATGGATGTTAACCTATCAAAATATTCAC
ACCTTTTATAAAAAGAATCAAATCGTGATCCTAGATATAGGCTCAGAGAGAGTTAAACTT
TGTAGTTCCTCAGAACCTATAAATTATGCTTTTTCTTTTGTTCAAAGAGTTGGTAAACGT
CAAGAATATCAACCTCACTATGTTATGTCGTCAATGGATAGATACAAATGGGTAGTTGGT
CCTGATACAACCACCTCTGACCTTTATTTTGGTGTTAGAAATGGTAGATTCCTCGAGAAG
AACCATNAAAGAATNATTAAATATTCGGTTCAAAGAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
l*LLYITMAEEGATTTCPENRVITGSDLLSFNENITNENFKPELLKRTDLKLSTSNGFKV
TNVLTKEECLHFIEESERKGYVSIEKEFPTGYRNNLRYLGKSDKLSDILWERLEAIFRES
DLEGVRPYGFDQKGVWIPIGIDNCFTFSKYLPGSRFKAHYDAVFADNPDRRSIYTIQIYL
NDGFK---

---SKEKDEKDLESAISLYVKAQMLLTGYPSIDAITQKIKNMNISVTSPLRKKPLVTLST
IPEVQLFDILVLLKPIDLGRLRVTSKYFATIVAKDSLWRRIYIRDFSMEAFNFEKNYVLN
FKVNSIHESIVKSSKSKPTKMDVKRWMLTYQNIHTFYKKNQIVILDIGSERVKLCSSSEP
INYAFSFVQRVGKRQEYQPHYVMSSMDRYKWVVGPDTTTSDLYFGVRNGRFLEKNHXRXI
KYSVQR
Translated Amino Acid sequence (All Frames) 
Frame A:
iiiviynngrrrcnnnmsrk*gynr**fikl**khy**kf*t*iikknrfkiinlkwf*s
ykcfnkrrmftfy*rk*kkrlcfn*krisnwis**fkifrke**iiryfmgkirsnf*re
*fgrc*tlwfrskgsldsnwy**lfyi*qiftr**iqgtl*csicrqpr*tfnlyhsnlf
krwi*---

---fkgkg*ers*vcnfvickgsnvidglsin*cnhskdkeyeyfsditieketigdtin
htrgatiryfsaietn*fg*ikghq*vlcnhrgkgftleknlys*flnggiqf*kelrie
fqs*fnprinc*i**iktnqngcqemdvnlskyshll*kesnrdpryrlres*tl*flrt
yklcfffcsksw*tsristslcyvvng*iqmgsws*ynhl*plfwc*kw*ipreepxknx
*ifgsk

Frame B:
l*LLYITMAEEGATTTCPENRVITGSDLLSFNENITNENFKPELLKRTDLKLSTSNGFKV
TNVLTKEECLHFIEESERKGYVSIEKEFPTGYRNNLRYLGKSDKLSDILWERLEAIFRES
DLEGVRPYGFDQKGVWIPIGIDNCFTFSKYLPGSRFKAHYDAVFADNPDRRSIYTIQIYL
NDGFK---

---SKEKDEKDLESAISLYVKAQMLLTGYPSIDAITQKIKNMNISVTSPLRKKPLVTLST
IPEVQLFDILVLLKPIDLGRLRVTSKYFATIVAKDSLWRRIYIRDFSMEAFNFEKNYVLN
FKVNSIHESIVKSSKSKPTKMDVKRWMLTYQNIHTFYKKNQIVILDIGSERVKLCSSSEP
INYAFSFVQRVGKRQEYQPHYVMSSMDRYKWVVGPDTTTSDLYFGVRNGRFLEKNHXRXI
KYSVQR

Frame C:
yncyi*qwqkkvqqqhvqkigl*qvviy*almktllmkilnlny*keqi*nyqpqmvlkl
qmf*qkknvyillkkvkekvmfqlkknfqldivii*di*ervinyqifygkd*kqflerv
iwkvldlmvsikrefgfqlvliivlhlaniyqvvdsrhimmqylqttqidvqfipfkfi*
tmdl---

---qrkrmrkilslqfrym*rlkcy*rvihqlmqslkr*ri*ifq*hhh*ernhw*hyqp
yqrcnysif*cy*nqliwvd*gspvstlqpswqrihfgeefifvisqwrhsilkrity*i
skliqstnqllnlvnqnqpkwmsrdgc*pikiftpfikriks*s*i*aqrelnfvvpqnl
*imlfllfkelvnvkninltmlcrqwidtng*lvliqppltfilvlemvdssrrtxkexl
nirfke
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC608 (VFC608Q) /CSM/VF/VFC6-A/VFC608Q.Seq.d/                       2500   0.0
VHP263 (VHP263Q) /CSM/VH/VHP2-C/VHP263Q.Seq.d/                       1102   0.0
VHO869 (VHO869Q) /CSM/VH/VHO8-C/VHO869Q.Seq.d/                       1102   0.0
VHO782 (VHO782Q) /CSM/VH/VHO7-D/VHO782Q.Seq.d/                       1102   0.0
VHN811 (VHN811Q) /CSM/VH/VHN8-A/VHN811Q.Seq.d/                       1102   0.0
VHK771 (VHK771Q) /CSM/VH/VHK7-C/VHK771Q.Seq.d/                       1102   0.0
VHK665 (VHK665Q) /CSM/VH/VHK6-C/VHK665Q.Seq.d/                       1102   0.0
VHI302 (VHI302Q) /CSM/VH/VHI3-A/VHI302Q.Seq.d/                       1102   0.0
VHG569 (VHG569Q) /CSM/VH/VHG5-C/VHG569Q.Seq.d/                       1102   0.0
VHG486 (VHG486Q) /CSM/VH/VHG4-D/VHG486Q.Seq.d/                       1102   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX175844|BX175844.1 Danio rerio genomic clone DKEY-180N6, genomic survey sequence.    40  0.008  3
BI741909|BI741909.1 kt82f03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to WP:CE25582 Y71H2AL.F ;, mRNA sequence.    48  0.28  1
AZ618178|AZ618178.1 1M0449H17R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0449H17 R, DNA sequence.    48  0.28  1
Z82277|Z82277.1 Caenorhabditis elegans cosmid LLC1.               46  0.36  2
AE016999|AE016999.1 Bacillus cereus ATCC 14579 section 2 of 18 of the complete genome.    36  0.40  10
AC018907|AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.    40  0.44  6
AC116864|AC116864.3 Mus musculus clone RP24-408N5, WORKING DRAFT SEQUENCE, 4 ordered pieces.    38  0.46  3
AC023886|AC023886.7 Homo sapiens BAC clone RP11-402J6 from 4, complete sequence.    34  0.63  5
AP001446|AP001446.3 Homo sapiens genomic DNA, chromosome 18q21 clone:RP11-700H19, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  0.74  5
AV261415|AV261415.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930421I10, 3' end partial sequence.    40  0.75  2
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954203_553(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    56   2e-06
CP000155_6431(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    54   1e-05
AM494953_5(AM494953|pid:none) Leishmania braziliensis chromosome...    52   4e-05
CP001574_6(CP001574|pid:none) Micromonas sp. RCC299 chromosome 1...    50   1e-04
AM502234_5(AM502234|pid:none) Leishmania infantum chromosome 16.       46   0.003
CP000113_2153(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    45   0.006
CP000083_1283(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    44   0.017
AB025623_2(AB025623|pid:none) Arabidopsis thaliana genomic DNA, ...    43   0.028
AY086117_1(AY086117|pid:none) Arabidopsis thaliana clone 21548 m...    43   0.028
AM920428_695(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    42   0.063
protein update 2009. 6.18
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VFC608 is cyt
5' end seq. ID VFC608F
5' end seq. 
>VFC608F.Seq
ATTATAATTGTTATATATAACAATGGCAGAAGAAGGTGCAACAACAACATGTCCAGAAAA
TAGGGTTATAACAGGTAGTGATTTATTAAGCTTTAATGAAAACATTACTAATGAAAATTT
TAAACCTGAATTATTAAAAAGAACAGATTTAAAATTATCAACCTCAAATGGTTTTAAAGT
TACAAATGTTTTAACAAAAGAAGAATGTTTACATTTTATTGAAGAAAGTGAAAGAAAAGG
TTATGTTTCAATTGAAAAAGAATTTCCAACTGGATATCGTAATAATTTAAGATATTTAGG
AAAGAGTGATAAATTATCAGATATTTTATGGGAAAGATTAGAAGCAATTTTTAGAGAGAG
TGATTTGGAAGGTGTTAGACCTTATGGTTTCGATCAAAAGGGAGTTTGGATTCCAATTGG
TATTGATAATTGTTTTACATTTAGCAAATATTTACCAGGTAGTAGATTCAAGGCACATTA
TGATGCAGTATTTGCAGACAACCCAGATAGACGTTCAATTTATACCATTCAAATTTATTT
AAACGATGGATTTAAA----------
Length of 5' end seq. 556
3' end seq. ID VFC608Z
3' end seq. 
>VFC608Z.Seq
----------TTCAAAGGAAAAGGATGAGAAAGATCTTGAGTCTGCAATTTCGTTATATG
TAAAGGCTCAAATGTTATTGACGGGTTATCCATCAATTGATGCAATCACTCAAAAGATAA
AGAATATGAATATTTCAGTGACATCACCATTGAGAAAGAAACCATTGGTGACACTATCAA
CCATACCAGAGGTGCAACTATTCGATATTTTAGTGCTATTGAAACCAATTGATTTGGGTA
GATTAAGGGTCACCAGTAAGTACTTTGCAACCATCGTGGCAAAGGATTCACTTTGGAGAA
GAATTTATATTCGTGATTTCTCAATGGAGGCATTCAATTTTGAAAAGAATTACGTATTGA
ATTTCAAAGTTAATTCAATCCACGAATCAATTGTTAAATCTAGTAAATCAAAACCAACCA
AAATGGATGTCAAGAGATGGATGTTAACCTATCAAAATATTCACACCTTTTATAAAAAGA
ATCAAATCGTGATCCTAGATATAGGCTCAGAGAGAGTTAAACTTTGTAGTTCCTCAGAAC
CTATAAATTATGCTTTTTCTTTTGTTCAAAGAGTTGGTAAACGTCAAGAATATCAACCTC
ACTATGTTATGTCGTCAATGGATAGATACAAATGGGTAGTTGGTCCTGATACAACCACCT
CTGACCTTTATTTTGGTGTTAGAAATGGTAGATTCCTCGAGAAGAACCATNAAAGAATNA
TTAAATATTCGGTTCAAAGAG
Length of 3' end seq. 731
Connected seq. ID VFC608P
Connected seq. 
>VFC608P.Seq
ATTATAATTGTTATATATAACAATGGCAGAAGAAGGTGCAACAACAACATGTCCAGAAAA
TAGGGTTATAACAGGTAGTGATTTATTAAGCTTTAATGAAAACATTACTAATGAAAATTT
TAAACCTGAATTATTAAAAAGAACAGATTTAAAATTATCAACCTCAAATGGTTTTAAAGT
TACAAATGTTTTAACAAAAGAAGAATGTTTACATTTTATTGAAGAAAGTGAAAGAAAAGG
TTATGTTTCAATTGAAAAAGAATTTCCAACTGGATATCGTAATAATTTAAGATATTTAGG
AAAGAGTGATAAATTATCAGATATTTTATGGGAAAGATTAGAAGCAATTTTTAGAGAGAG
TGATTTGGAAGGTGTTAGACCTTATGGTTTCGATCAAAAGGGAGTTTGGATTCCAATTGG
TATTGATAATTGTTTTACATTTAGCAAATATTTACCAGGTAGTAGATTCAAGGCACATTA
TGATGCAGTATTTGCAGACAACCCAGATAGACGTTCAATTTATACCATTCAAATTTATTT
AAACGATGGATTTAAA----------TTCAAAGGAAAAGGATGAGAAAGATCTTGAGTCT
GCAATTTCGTTATATGTAAAGGCTCAAATGTTATTGACGGGTTATCCATCAATTGATGCA
ATCACTCAAAAGATAAAGAATATGAATATTTCAGTGACATCACCATTGAGAAAGAAACCA
TTGGTGACACTATCAACCATACCAGAGGTGCAACTATTCGATATTTTAGTGCTATTGAAA
CCAATTGATTTGGGTAGATTAAGGGTCACCAGTAAGTACTTTGCAACCATCGTGGCAAAG
GATTCACTTTGGAGAAGAATTTATATTCGTGATTTCTCAATGGAGGCATTCAATTTTGAA
AAGAATTACGTATTGAATTTCAAAGTTAATTCAATCCACGAATCAATTGTTAAATCTAGT
AAATCAAAACCAACCAAAATGGATGTCAAGAGATGGATGTTAACCTATCAAAATATTCAC
ACCTTTTATAAAAAGAATCAAATCGTGATCCTAGATATAGGCTCAGAGAGAGTTAAACTT
TGTAGTTCCTCAGAACCTATAAATTATGCTTTTTCTTTTGTTCAAAGAGTTGGTAAACGT
CAAGAATATCAACCTCACTATGTTATGTCGTCAATGGATAGATACAAATGGGTAGTTGGT
CCTGATACAACCACCTCTGACCTTTATTTTGGTGTTAGAAATGGTAGATTCCTCGAGAAG
AACCATNAAAGAATNATTAAATATTCGGTTCAAAGAG
Length of connected seq. 1287
Full length Seq ID -
Full length Seq. -
Length of full length seq. -