>VFC604 (VFC604Q) /CSM/VF/VFC6-A/VFC604Q.Seq.d/
XXXXXXXXXXCTATTACTCATATCTAATGTATAACTGGAATCAAAAAACAATTGGTCTTT
TTACTCTTGGTGTTGGTGGTGCAACAATTTTATATAGTGTTTTAATTGTTCCATTATTTT
TAAAAGTTTTATCTGAAAAAAAAGTAATTACAATTGGATTCTTTATTACATTCTGTGCAC
ATGTAATGCTATCAAGTTCAAAGTTTTCACAATATCTTTTTATTTTTGGTGCAATAGTTA
GTAGTATTGTTCCATGTGTTTCGAATTTATTATGCTCTGTAATATCTAAATCTACACCTC
AAGAAGTTCAAGGATCAGTATTAACAGGTCTTCAATCTGTAAAAGCACTTGGTAGCTTTG
CTGGTGCCATGGTAGCTAATAATTTACTAAGTCATTTCTCAAGTGATGAATCATCGATTT
ACTTTCCTCAAGCTATCTATTTTTTAAATGGTGTTGTATTATTTATAATAAT

---YYSYLMYNWNQKTIGLFTLGVGGATILYSVLIVPLFLKVLSEKKVITIGFFITFCAH
VMLSSSKFSQYLFIFGAIVSSIVPCVSNLLCSVISKSTPQEVQGSVLTGLQSVKALGSFA
GAMVANNLLSHFSSDESSIYFPQAIYFLNGVVLFII

Frame A:
---YYSYLMYNWNQKTIGLFTLGVGGATILYSVLIVPLFLKVLSEKKVITIGFFITFCAH
VMLSSSKFSQYLFIFGAIVSSIVPCVSNLLCSVISKSTPQEVQGSVLTGLQSVKALGSFA
GAMVANNLLSHFSSDESSIYFPQAIYFLNGVVLFII


Frame B:
---ithi*citgikkqlvflllvlvvqqfyivf*lfhyf*kfylkkk*lqldsllhsvhm
*cyqvqsfhniflflvq*lvvlfhvfriyyal*ylnlhlkkfkdqy*qvfnl*khlvall
vpw*liiy*visqvmnhrftflklsif*mvlyyl**


Frame C:
---llisnv*lesknnwsfyswcwwcnnfi*cfncsiifksfi*kksnynwilyyilctc
naikfkvftisfyfwcns**ycsmcfefimlcni*iytsrssrisinrssickstw*lcw
chgs**ftksflk**iidllsssylffkwcciiynn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH619 (VSH619Q) /CSM/VS/VSH6-A/VSH619Q.Seq.d/                        868   0.0
VSF833 (VSF833Q) /CSM/VS/VSF8-B/VSF833Q.Seq.d/                        868   0.0
VFC604 (VFC604Q) /CSM/VF/VFC6-A/VFC604Q.Seq.d/                        868   0.0
VFA280 (VFA280Q) /CSM/VF/VFA2-D/VFA280Q.Seq.d/                        860   0.0
VFM749 (VFM749Q) /CSM/VF/VFM7-C/VFM749Q.Seq.d/                        858   0.0
VFB775 (VFB775Q) /CSM/VF/VFB7-D/VFB775Q.Seq.d/                        848   0.0
VFG661 (VFG661Q) /CSM/VF/VFG6-C/VFG661Q.Seq.d/                        846   0.0
VSF685 (VSF685Q) /CSM/VS/VSF6-D/VSF685Q.Seq.d/                        841   0.0
VFM232 (VFM232Q) /CSM/VF/VFM2-B/VFM232Q.Seq.d/                        841   0.0
VFE841 (VFE841Q) /CSM/VF/VFE8-B/VFE841Q.Seq.d/                        833   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   652  0.0  2
U67540|U67540.1 Methanococcus jannaschii section 82 of 150 of the complete genome.    38  0.45  4
BZ878757|BZ878757.1 CH240_240F6.TV CHORI-240 Bos taurus genomic clone CH240_240F6, DNA sequence.    40  0.82  2
AW124473|AW124473.1 UI-M-BH2.1-ape-g-07-0-UI.s1 NIH_BMAP_M_S3.1 Mus musculus cDNA clone UI-M-BH2.1-ape-g-07-0-UI 3', mRNA sequence.    32  1.1  2
AV354145|AV354145.1 Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120423K01, 3' end partial sequence.    32  1.3  2
BF452703|BF452703.1 maa61g07.y1 Soares mouse 3NbMS Mus musculus cDNA clone IMAGE:3821388 5', mRNA sequence.    32  1.3  2
AV326473|AV326473.1 Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330411F05, 3' end partial sequence.    32  1.4  2
BB067903|BB067903.1 Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030468F01, 3' end partial sequence.    32  1.5  2
AV362240|AV362240.1 Mus musculus adult male cortex cDNA, RIKEN full-length enriched library, clone:7730402K23, 3' end partial sequence.    32  1.5  2
BB179356|BB179356.1 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230078L24, 3' end partial sequence.    32  1.5  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_37(AC117075|pid:none) Dictyostelium discoideum chromoso...   299   2e-80
AC114263_27(AC114263|pid:none) Dictyostelium discoideum chromoso...   120   1e-26
BX842647_256(BX842647|pid:none) Bdellovibrio bacteriovorus compl...    59   7e-08
CP000348_783(CP000348|pid:none) Leptospira borgpetersenii serova...    55   8e-07
AE008922_4095(AE008922|pid:none) Xanthomonas campestris pv. camp...    54   1e-06
AE016823_2293(AE016823|pid:none) Leptospira interrogans serovar ...    54   2e-06
CP000158_488(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,...    54   2e-06
AM398681_2083(AM398681|pid:none) Flavobacterium psychrophilum JI...    54   2e-06
CP000699_4799(CP000699|pid:none) Sphingomonas wittichii RW1, com...    52   8e-06
CP000250_2442(CP000250|pid:none) Rhodopseudomonas palustris HaA2...    50   2e-05

 psg: 0.77  gvh: 0.63  alm: 0.26  top: 0.53  tms: 0.27  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VFC604 is end

>VFC604Z.Seq
----------CTATTACTCATATCTAATGTATAACTGGAATCAAAAAACAATTGGTCTTT
TTACTCTTGGTGTTGGTGGTGCAACAATTTTATATAGTGTTTTAATTGTTCCATTATTTT
TAAAAGTTTTATCTGAAAAAAAAGTAATTACAATTGGATTCTTTATTACATTCTGTGCAC
ATGTAATGCTATCAAGTTCAAAGTTTTCACAATATCTTTTTATTTTTGGTGCAATAGTTA
GTAGTATTGTTCCATGTGTTTCGAATTTATTATGCTCTGTAATATCTAAATCTACACCTC
AAGAAGTTCAAGGATCAGTATTAACAGGTCTTCAATCTGTAAAAGCACTTGGTAGCTTTG
CTGGTGCCATGGTAGCTAATAATTTACTAAGTCATTTCTCAAGTGATGAATCATCGATTT
ACTTTCCTCAAGCTATCTATTTTTTAAATGGTGTTGTATTATTTATAATAAT