VFC603
Library VF
(Link to library)
Clone ID VFC603
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08664-1
Original site URL
Representative seq. ID VFC603P
(Link to Original site)
Representative DNA sequence
>VFC603 (VFC603Q) /CSM/VF/VFC6-A/VFC603Q.Seq.d/
TCCTCTTTGTATTACAATTAGNTNCATCACAACAATGNGAAACTGGTTCAGNCCAATTCA
CATCANATTTAAGTAATCTCTCTGATTGGGACCATTACTGGGAACGTACTGTAGGAAGTG
GTCATGCAGTTTTAGCACTTCGTGAAGATTGGAGAAGAGCATTAGCACTTTCACATGAAA
AATTAGGATTTCAAAGTGTTAGATTTCATGGTATTNTTGATGATGATTTATCAXXXXXXX
XXXGGTAAAATGAGAGCAAATGTANCTGGTNAACATCCAACTGCTGGTGTTTTTACAACT
CTTTCAGATGATGAAATTATGGTTATCATTTATAATCACAATATTCCAGATGCTCCAATT
GCAAATGAAACCATTTGTGTCACACTTGAAAATATTCAAGGTACTATCACCGATTCTNAT
CTCCGTCGTATTGATCATGCCAATTTGTAATCCAATTGCAACTTGGACTGCAATGGGTGA
ACCTGAATATCCAACTAAATCTCAAATTGATCAACTTAAAGCCGCTGCTGAATTTAGTTA
TCAACCAATNATTTCAATCAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
LFVLQLXXSQQXETGSXQFTSXLSNLSDWDHYWERTVGSGHAVLALREDWRRALALSHEK
LGFQSVRFHGIXDDDLS---

---GKMRANVXGXHPTAGVFTTLSDDEIMVIIYNHNIPDAPIANETICVTLENIQGTITD
SXLRRIDHANL*sncnldcng*t*isn*isn*st*src*i*lstnxfnq


Translated Amino Acid sequence (All Frames)
Frame A:
sslyyn*xhhnnxklvqxnshxi*visligtitgnvl*evvmqf*hfvkigeeh*hfhmk
n*dfkvldfmvxlmmiy---

---GKMRANVXGXHPTAGVFTTLSDDEIMVIIYNHNIPDAPIANETICVTLENIQGTITD
SXLRRIDHANL*sncnldcng*t*isn*isn*st*src*i*lstnxfnq

Frame B:
plcitixxittmxnwfxpihixfk*sl*lgpllgtycrkwscsfsts*rleksistft*k
iriskc*iswyx***fi---

---vk*eqmxlvniqllvflqlfqmmklwlsfiitifqmlqlqmkpfvshlkifkvlspi
lisvvlimpicnpiatwtamgepeyptksqidqlkaaaefsyqpxisik

Frame C:
LFVLQLXXSQQXETGSXQFTSXLSNLSDWDHYWERTVGSGHAVLALREDWRRALALSHEK
LGFQSVRFHGIXDDDLS---

---*neskcxwxtsncwcfynsfr**nygyhl*sqysrcsnck*nhlcht*kysryyhrf
xspsy*scqfviqlqlglqwvnlniqlnlklinlkpllnlvinqxfqsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC603 (VFC603Q) /CSM/VF/VFC6-A/VFC603Q.Seq.d/ 997 0.0
VFG277 (VFG277Q) /CSM/VF/VFG2-D/VFG277Q.Seq.d/ 565 e-160
AFB558 (AFB558Q) /CSM/AF/AFB5-C/AFB558Q.Seq.d/ 563 e-159
VFH340 (VFH340Q) /CSM/VF/VFH3-B/VFH340Q.Seq.d/ 547 e-155
VFL732 (VFL732Q) /CSM/VF/VFL7-B/VFL732Q.Seq.d/ 523 e-148
VFH281 (VFH281Q) /CSM/VF/VFH2-D/VFH281Q.Seq.d/ 426 e-118
SLC602 (SLC602Q) /CSM/SL/SLC6-A/SLC602Q.Seq.d/ 426 e-118
AHP874 (AHP874Q) /CSM/AH/AHP8-D/AHP874Q.Seq.d/ 36 0.55
VHQ461 (VHQ461Q) /CSM/VH/VHQ4-C/VHQ461Q.Seq.d/ 36 0.55
VHQ432 (VHQ432Q) /CSM/VH/VHQ4-B/VHQ432Q.Seq.d/ 36 0.55

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX004986|BX004986.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-89B18. 44 1.8 1
AC015612|AC015612.2 Homo sapiens clone RP11-45G3, LOW-PASS SEQUENCE SAMPLING. 44 1.8 1
AL831730|AL831730.15 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 44 1.8 1
AC120068|AC120068.5 Rattus norvegicus clone CH230-249H10, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 42 7.2 1
AC112438|AC112438.5 Rattus norvegicus clone CH230-119D4, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces. 42 7.2 1
AC006910|AC006910.2 Caenorhabditis elegans clone Y92H12, WORKING DRAFT SEQUENCE, 36 unordered pieces. 42 7.2 1
AQ879181|AQ879181.1 HS_3212_B1_B12_T7C CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3212 Col=23 Row=D, genomic survey sequence. 42 7.2 1
BH775719|BH775719.1 fzmb011f016f10f0 fzmb filtered library Zea mays genomic clone fzmb011f016f10 5', DNA sequence. 42 7.2 1
AC084161|AC084161.2 Caenorhabditis elegans cosmid Y92H12A, complete sequence. 42 7.2 1
AJ269546|AJ269546.1 Canis familiaris microsatellite DNA, clone ZuBeCa33. 42 7.2 1
dna update 2003. 9.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ384275_1(DQ384275|pid:none) Capsaspora owczarzaki beta xylosid... 69 6e-11
(P23552) RecName: Full=Beta-xylosidase; EC=3.2.1.37; Al... 58 1e-07
CP000679_2316(CP000679|pid:none) Caldicellulosiruptor saccharoly... 58 1e-07
AB042614_1(AB042614|pid:none) Aeromonas caviae xysA gene for bet... 53 6e-06
BA000030_1458(BA000030|pid:none) Streptomyces avermitilis MA-468... 43 0.007
CP000685_772(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 43 0.007
CP000557_1746(CP000557|pid:none) Geobacillus thermodenitrificans... 42 0.008
CP000934_2939(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 41 0.019
(Q9ZFM2) RecName: Full=Beta-xylosidase; EC=3.2.1.37; Al... 41 0.025
BA000004_1068(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 37 0.36
protein update 2009. 6.18
PSORT

psg: 0.86 gvh: 0.57 alm: 0.43 top: 0.40 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
12.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VFC603 is nuc

5' end seq. ID VFC603F
5' end seq.
>VFC603F.Seq
TCCTCTTTGTATTACAATTAGNTNCATCACAACAATGNGAAACTGGTTCAGNCCAATTCA
CATCANATTTAAGTAATCTCTCTGATTGGGACCATTACTGGGAACGTACTGTAGGAAGTG
GTCATGCAGTTTTAGCACTTCGTGAAGATTGGAGAAGAGCATTAGCACTTTCACATGAAA
AATTAGGATTTCAAAGTGTTAGATTTCATGGTATTNTTGATGATGATTTATCA-------
---
Length of 5' end seq. 233
3' end seq. ID VFC603Z
3' end seq.
>VFC603Z.Seq
----------GGTAAAATGAGAGCAAATGTANCTGGTNAACATCCAACTGCTGGTGTTTT
TACAACTCTTTCAGATGATGAAATTATGGTTATCATTTATAATCACAATATTCCAGATGC
TCCAATTGCAAATGAAACCATTTGTGTCACACTTGAAAATATTCAAGGTACTATCACCGA
TTCTNATCTCCGTCGTATTGATCATGCCAATTTGTAATCCAATTGCAACTTGGACTGCAA
TGGGTGAACCTGAATATCCAACTAAATCTCAAATTGATCAACTTAAAGCCGCTGCTGAAT
TTAGTTATCAACCAATNATTTCAATCAAAA
Length of 3' end seq. 320
Connected seq. ID VFC603P
Connected seq.
>VFC603P.Seq
TCCTCTTTGTATTACAATTAGNTNCATCACAACAATGNGAAACTGGTTCAGNCCAATTCA
CATCANATTTAAGTAATCTCTCTGATTGGGACCATTACTGGGAACGTACTGTAGGAAGTG
GTCATGCAGTTTTAGCACTTCGTGAAGATTGGAGAAGAGCATTAGCACTTTCACATGAAA
AATTAGGATTTCAAAGTGTTAGATTTCATGGTATTNTTGATGATGATTTATCA-------
---GGTAAAATGAGAGCAAATGTANCTGGTNAACATCCAACTGCTGGTGTTTTTACAACT
CTTTCAGATGATGAAATTATGGTTATCATTTATAATCACAATATTCCAGATGCTCCAATT
GCAAATGAAACCATTTGTGTCACACTTGAAAATATTCAAGGTACTATCACCGATTCTNAT
CTCCGTCGTATTGATCATGCCAATTTGTAATCCAATTGCAACTTGGACTGCAATGGGTGA
ACCTGAATATCCAACTAAATCTCAAATTGATCAACTTAAAGCCGCTGCTGAATTTAGTTA
TCAACCAATNATTTCAATCAAAA
Length of connected seq. 553
Full length Seq ID -
Full length Seq. -
Length of full length seq. -