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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC602
Library VF
(Link to library)
Clone ID VFC602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID VFC602P
(Link to Original site)
Representative DNA sequence 
>VFC602 (VFC602Q) /CSM/VF/VFC6-A/VFC602Q.Seq.d/
AATTCAAAAAATAATCAAATAAATAAATATAATATAAAATGGATGGTGAAGATGTTCAAG
CTTTAGTAATTGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATGCCC
CACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTTGGTA
TGGGTCAAAAAGATTCATATGTAGGTGATGAAGCTCAATCAAAAAGAGGTATCTTAACCC
TCAAATATCCAATTGAACACGGTATCGTTACCAATTGGGATGATATGGAAAAAATCTGGC
ACCATACTTTCTACAATGAACTCCGTGTCGCACCAGAAGAACACCCAGTTCTCTTAACTG
AAGCCCCATTAAATCCAAAAGCTAACAGAGAAAAAATGACTCAAATCATGTTTGAAACTT
TCAATACTCCAGCCATGTACGTTGCCATTCAAGCTGTCTTATCATTATATGCATCTGGTC
GTACCACTGGTATCGTTATGGATTCAGGTGATGGTGTCTCTCACACTGTTCCAATTTATG
AAGGTTATGCCTTACCACACGCCATCTTACGTTTXXXXXXXXXXCTGATTACATGATGAA
AATCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATTGTCAGAGA
TATCAAAGAAAAATTAGCCTACGTCGCTCTCGACTTTGAAGCTGAAATGCAAACTGCTGC
TTCATCATCAGCATTAGAAAAATCATACGAATTACCAGACGGTCAAGTTATTACCATCGG
TAATGAACGTTTCCGTTGTCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATC
AGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTCGATATCCGTAA
AGATTTATACGGTAATGTCGTCTTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGA
TCGTATGAACAAAGAATTAACTGCATTAGCACCATCAACCATGAAAATTAAAATTATTGC
ACCACCAGAACGTAAATACTCAGTTTGGATCGGTGGATCTATTTTAGCTTCACTCTCAAC
TTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCA
CAGAAAATGTTTCTAAACAATTAAAACCAGTGATGAAAGTGCTTCTCACACTTAACAATA
TAATATTTATATGTATAATAATAAAATCTCAATAAAATATAATTCTTATTTTATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fkk*snk*i*YKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGM
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYE
GYALPHAILR---

---DYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP
DGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGT
TMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYD
ESGPSIVHRKCF*tiktsdesasht*qyniymynnkisikynsyfi
Translated Amino Acid sequence (All Frames) 
Frame A:
nsknnqinkynikwmvkmfkl**litvlvcvkpvllvmmphvlfshqllvvqdtlvlwlv
wvkkihm*vmklnqkevs*psniqlntvslpigmiwkksgtilstmnsvshqkntqfs*l
kph*iqkltekk*lksclklsilqpctlpfklsyhymhlvvplvslwiqvmvsltlfqfm
kvmpyhtpsyv---

---lit**ks*lnvvthsppllkeklseiskkn*ptslstlklkcklllhhqh*knhtny
qtvkllpsvmnvsvvqkpssnhhs*vwnqlvstkppttps*nvmsisvkiytvmssyqvv
qlcsqvlliv*tkn*lh*hhqp*klkllhhqnvntqfgsvdlf*lhsqlsnkcgspkknm
tnqvhqlstenvskqlkpvmkvlltlnniificiiiksq*niililf

Frame B:
iqkiik*inii*ngw*rcssfsn**rfwyv*srfcw**cptccfpincwsskthwcygwy
gskrficr**ssikkrylnpqisn*tryryqlg*ygknlapyflq*tpcrtrrtpssln*
spiksks*qrkndsnhv*nfqysshvrchsscliiiciwsyhwyrygfr*wclshcsnl*
rlclttrhltf---

---*lhdenln*twllihhhc*krncqryqrkislrrsrl*s*nanccfiisirkiirit
rrssyyhr**tfplsrsplptiilrygiswyprnhlqlhhem*cryp*rfir*crlirwy
nyvpryc*syeqrincistinhen*nycttrt*ilsldrwiyfsftlnfptnvdlqrri*
rirsincpqkmflnn*nq**kcfshlti*ylyv***nlnki*flfy

Frame C:
fkk*snk*i*YKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGM
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYE
GYALPHAILR---

---DYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP
DGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGT
TMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYD
ESGPSIVHRKCF*tiktsdesasht*qyniymynnkisikynsyfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC602 (VFC602Q) /CSM/VF/VFC6-A/VFC602Q.Seq.d/                       2224   0.0
VFI430 (VFI430Q) /CSM/VF/VFI4-B/VFI430Q.Seq.d/                       1205   0.0
VFD511 (VFD511Q) /CSM/VF/VFD5-A/VFD511Q.Seq.d/                       1205   0.0
VFB771 (VFB771Q) /CSM/VF/VFB7-C/VFB771Q.Seq.d/                       1205   0.0
CFI575 (CFI575Q) /CSM/CF/CFI5-D/CFI575Q.Seq.d/                       1205   0.0
VFA470 (VFA470Q) /CSM/VF/VFA4-C/VFA470Q.Seq.d/                       1197   0.0
VFH562 (VFH562Q) /CSM/VF/VFH5-C/VFH562Q.Seq.d/                       1178   0.0
VFL506 (VFL506Q) /CSM/VF/VFL5-A/VFL506Q.Seq.d/                       1140   0.0
VFF228 (VFF228Q) /CSM/VF/VFF2-B/VFF228Q.Seq.d/                       1140   0.0
VFD357 (VFD357Q) /CSM/VF/VFD3-C/VFD357Q.Seq.d/                       1140   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1205  0.0  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.  1037  0.0  4
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.        950  0.0  3
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   950  0.0  3
X03281|X03281.1 Dictyostelium discoideum gene for actin A8.      940  0.0  2
X03282|X03282.1 dictyostelium discoideum gene for actin A12.     896  0.0  2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   890  0.0  6
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   884  0.0  14
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds.   844  0.0  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   797  0.0  2
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   379   0.0
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   374   0.0
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        379   0.0
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   374   0.0
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   373   0.0
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   379   0.0
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          372   0.0
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   368   0.0
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   366   0.0
AF082863_1(AF082863|pid:none) Dreissena polymorpha cytoplasmic a...   361   0.0
protein update 2009. 6.18
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFC602 is cyt
5' end seq. ID VFC602F
5' end seq. 
>VFC602F.Seq
AATTCAAAAAATAATCAAATAAATAAATATAATATAAAATGGATGGTGAAGATGTTCAAG
CTTTAGTAATTGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATGCCC
CACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTTGGTA
TGGGTCAAAAAGATTCATATGTAGGTGATGAAGCTCAATCAAAAAGAGGTATCTTAACCC
TCAAATATCCAATTGAACACGGTATCGTTACCAATTGGGATGATATGGAAAAAATCTGGC
ACCATACTTTCTACAATGAACTCCGTGTCGCACCAGAAGAACACCCAGTTCTCTTAACTG
AAGCCCCATTAAATCCAAAAGCTAACAGAGAAAAAATGACTCAAATCATGTTTGAAACTT
TCAATACTCCAGCCATGTACGTTGCCATTCAAGCTGTCTTATCATTATATGCATCTGGTC
GTACCACTGGTATCGTTATGGATTCAGGTGATGGTGTCTCTCACACTGTTCCAATTTATG
AAGGTTATGCCTTACCACACGCCATCTTACGTTT----------
Length of 5' end seq. 574
3' end seq. ID VFC602Z
3' end seq. 
>VFC602Z.Seq
----------CTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACCACC
ACTGCTGAAAGAGAAATTGTCAGAGATATCAAAGAAAAATTAGCCTACGTCGCTCTCGAC
TTTGAAGCTGAAATGCAAACTGCTGCTTCATCATCAGCATTAGAAAAATCATACGAATTA
CCAGACGGTCAAGTTATTACCATCGGTAATGAACGTTTCCGTTGTCCAGAAGCCCTCTTC
CAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAACCACCTACAACTCCATC
ATGAAATGTGATGTCGATATCCGTAAAGATTTATACGGTAATGTCGTCTTATCAGGTGGT
ACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAGAATTAACTGCATTAGCACCA
TCAACCATGAAAATTAAAATTATTGCACCACCAGAACGTAAATACTCAGTTTGGATCGGT
GGATCTATTTTAGCTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATAT
GACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTCTAAACAATTAAAACCAGTGAT
GAAAGTGCTTCTCACACTTAACAATATAATATTTATATGTATAATAATAAAATCTCAATA
AAATATAATTCTTATTTTATTT
Length of 3' end seq. 672
Connected seq. ID VFC602P
Connected seq. 
>VFC602P.Seq
AATTCAAAAAATAATCAAATAAATAAATATAATATAAAATGGATGGTGAAGATGTTCAAG
CTTTAGTAATTGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATGCCC
CACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTTGGTA
TGGGTCAAAAAGATTCATATGTAGGTGATGAAGCTCAATCAAAAAGAGGTATCTTAACCC
TCAAATATCCAATTGAACACGGTATCGTTACCAATTGGGATGATATGGAAAAAATCTGGC
ACCATACTTTCTACAATGAACTCCGTGTCGCACCAGAAGAACACCCAGTTCTCTTAACTG
AAGCCCCATTAAATCCAAAAGCTAACAGAGAAAAAATGACTCAAATCATGTTTGAAACTT
TCAATACTCCAGCCATGTACGTTGCCATTCAAGCTGTCTTATCATTATATGCATCTGGTC
GTACCACTGGTATCGTTATGGATTCAGGTGATGGTGTCTCTCACACTGTTCCAATTTATG
AAGGTTATGCCTTACCACACGCCATCTTACGTTT----------CTGATTACATGATGAA
AATCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATTGTCAGAGA
TATCAAAGAAAAATTAGCCTACGTCGCTCTCGACTTTGAAGCTGAAATGCAAACTGCTGC
TTCATCATCAGCATTAGAAAAATCATACGAATTACCAGACGGTCAAGTTATTACCATCGG
TAATGAACGTTTCCGTTGTCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATC
AGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTCGATATCCGTAA
AGATTTATACGGTAATGTCGTCTTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGA
TCGTATGAACAAAGAATTAACTGCATTAGCACCATCAACCATGAAAATTAAAATTATTGC
ACCACCAGAACGTAAATACTCAGTTTGGATCGGTGGATCTATTTTAGCTTCACTCTCAAC
TTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCA
CAGAAAATGTTTCTAAACAATTAAAACCAGTGATGAAAGTGCTTCTCACACTTAACAATA
TAATATTTATATGTATAATAATAAAATCTCAATAAAATATAATTCTTATTTTATTT
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -