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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC601
Library VF
(Link to library)
Clone ID VFC601
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16269-1
Original site URL
Representative seq. ID VFC601E
(Link to Original site)
Representative DNA sequence 
>VFC601 (VFC601Q) /CSM/VF/VFC6-A/VFC601Q.Seq.d/
TTTCAGAAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGC
CCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCC
AGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGC
TGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGC
TCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAA
CATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAA
AGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCC
AGCCCTCGTTATAGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCAT
TGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAA
AATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGC
TGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCGCTGG
TAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTC
AAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGAC
TAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCA
AAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTCGT
CAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAAC
TGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCC
AGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGT
TAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTT
TAAATAGAT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
frnhht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGA
APYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRK
VNVNQKRYAVVSALAASAVPALVIARGHRINGINEVPLVIANESVDTLQKTKAAVELLKK
INAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVAGKTTVSQALRNIPGVEVANVS
RLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLV
NSDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGIKV
SKKNQLRAKLVAATFNQ*ifk*
Translated Amino Acid sequence (All Frames) 
Frame A:
fqksshikndyssicpsl*cpkqscr*s*apkcldhpnpsrfs*lcphqlkqecssslwc
csirw*tnlc*imgywsccrsysscsrfrytpfrsrclr*hv*rwsyvwskqdletles*
s*rqpkeircclsfsclscpsprysswsqnqwyq*spishcqrir*hppknqscr*iike
nqrlr*chqshrlqtyscwcw*skkqtlqsp*rsisrrrw*dyrlpslt*hprc*scqrl
ktqlikistrwslr*ihhld*irfrtirlnlwylcqiicskerlhsptsndc*r*ycqtr
ql**npscr*sqqsrrqtsncpsssf*pikeltcyd*ikpsrrlnpsyss*iikikryqs
*qkesiks*iscchfqpinf*id


Frame B:
frnhht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGA
APYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRK
VNVNQKRYAVVSALAASAVPALVIARGHRINGINEVPLVIANESVDTLQKTKAAVELLKK
INAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVAGKTTVSQALRNIPGVEVANVS
RLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLV
NSDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGIKV
SKKNQLRAKLVAATFNQ*ifk*


Frame C:
seiithkk*llvhlskslmpktkl*vklssqms*ppqsvqi*ltlstpt*trmlvklmvl
lhtlvnkpllnhgvlvvlslvflvfqvqvhtvqvkvpsvtcvevvvcmvqtrpgdvgivk
ltstkrdtllsql*lpqlsqpsl*lvvtesmvsmksh*slptnpltpskkpklplny*rk
stptlmspksstpnifvlvlvkqetdvtksvkvh*ssslvrlpspkpyvtsqvlklptsq
dsty*n*hqvvt*vdsssglnplsnn*tqplvplpnhllkrkvtlshvq*lltlilsdss
tlmksklplepaksssnvqlpqfvvlth*rtyvl*ln*tqppsqpvvlklnh*nqkvskl
akrin*eln*llplstnkflnr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC601 (VFC601Q) /CSM/VF/VFC6-A/VFC601Q.Seq.d/                       2278   0.0
VHB796 (VHB796Q) /CSM/VH/VHB7-D/VHB796Q.Seq.d/                       2262   0.0
CHC407 (CHC407Q) /CSM/CH/CHC4-A/CHC407Q.Seq.d/                       2262   0.0
VFN478 (VFN478Q) /CSM/VF/VFN4-D/VFN478Q.Seq.d/                       2254   0.0
VFN437 (VFN437Q) /CSM/VF/VFN4-B/VFN437Q.Seq.d/                       2254   0.0
VFL490 (VFL490Q) /CSM/VF/VFL4-D/VFL490Q.Seq.d/                       2254   0.0
VFK694 (VFK694Q) /CSM/VF/VFK6-D/VFK694Q.Seq.d/                       2254   0.0
VFF742 (VFF742Q) /CSM/VF/VFF7-B/VFF742Q.Seq.d/                       2254   0.0
VFF717 (VFF717Q) /CSM/VF/VFF7-A/VFF717Q.Seq.d/                       2254   0.0
VFF442 (VFF442Q) /CSM/VF/VFF4-B/VFF442Q.Seq.d/                       2254   0.0
own update 2002.12.16
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.  2177  0.0  2
AL424490|AL424490.1 T7 end of clone AZ0AA014F12 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus.    88  7e-31  5
Z35900|Z35900.1 S.cerevisiae chromosome II reading frame ORF YBR031w.    84  4e-27  3
Z74308|Z74308.1 S.cerevisiae chromosome IV reading frame ORF YDR012w.    84  1e-26  3
AQ874948|AQ874948.1 V119B5 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence.    84  1e-25  2
J03195|J03195.1 Yeast (S.cerevisiae) ribosomal protein L2 (ScrpL2A) gene, complete cds.    84  4e-25  2
X76078|X76078.1 S.cerevisiae (alphaS288C) GAL1, FUR4 and CAL1 genes.    84  1e-24  3
X95966|X95966.1 S.cerevisiae 35.4kb DNA region on left arm of chromosome IV.    84  2e-24  3
Z48008|Z48008.1 S.cerevisiae chromosome IV cosmid 8119.           84  2e-24  3
T38830|T38830.1 EST104394 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    78  3e-24  2
dna update 2003. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF147296_1(EF147296|pid:none) Populus trichocarpa clone WS0122_F...   379   e-104
CP000595_105(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...   367   e-100
EF676106_1(EF676106|pid:none) Picea sitchensis clone WS02710_D09...   367   e-100
AB236838_1(AB236838|pid:none) Trifolium pratense RNA for putativ...   365   2e-99
AC123596_24(AC123596|pid:none) Medicago truncatula clone mth1-17...   362   1e-98
(Q9SF40) RecName: Full=60S ribosomal protein L4-1;          Shor...   362   2e-98
AC148756_18(AC148756|pid:none) Medicago truncatula clone mth2-22...   361   3e-98
(P49691) RecName: Full=60S ribosomal protein L4-2; AltName: Full...   360   4e-98
CP001333_223(CP001333|pid:none) Micromonas sp. RCC299 chromosome...   358   2e-97
AK117624_1(AK117624|pid:none) Arabidopsis thaliana At5g02870 mRN...   358   2e-97
protein update 2009. 7.10
PSORT 

 psg: 0.76  gvh: 0.36  alm: 0.25  top: 0.23  tms: 0.07  mit: 0.38  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum

>> prediction for VFC601 is mit
5' end seq. ID VFC601F
5' end seq. 
>VFC601F.Seq
TTTCAGAAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGC
CCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCC
AGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGC
TGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGC
TCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAA
CATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAA
AGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCC
AGCCCTCGTTATAGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCAT
TGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAA
AATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTC----------
Length of 5' end seq. 579
3' end seq. ID VFC601Z
3' end seq. 
>VFC601Z.Seq
----------CAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAATCCG
TTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCTACG
CTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAAGAA
ACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCGCTGGTAAGACTACCGTCT
CCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTAT
TAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCTTTCG
AACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTACA
CTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGATGAAA
TCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTC
GTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTCTCAA
CCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAGAATC
AATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAGAT
Length of 3' end seq. 705
Connected seq. ID VFC601P
Connected seq. 
>VFC601P.Seq
TTTCAGAAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGC
CCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCC
AGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGC
TGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGC
TCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAA
CATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAA
AGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCC
AGCCCTCGTTATAGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCAT
TGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAA
AATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTC----------CAGAATCAATG
GTATCAATGAAGTCCCATTAGTCATTGCCAACGAATCCGTTGACACCCTCCAAAAAACCA
AAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCG
ACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTA
AAGGTCCATTAGTCGTCGTCGCTGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCC
CAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTC
ACTTAGGTAGATTCATCATCTGGACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTG
GTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTG
CTAACGCTGATATTGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCA
GCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACT
TACGTGCTATGATTAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAAT
CATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTG
CTGCCACTTTCAACCAATAAATTTTTAAATAGAT
Length of connected seq. 1284
Full length Seq ID VFC601E
Full length Seq. 
>VFC601E.Seq
TTTCAGAAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGC
CCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCC
AGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGC
TGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGC
TCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAA
CATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAA
AGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCC
AGCCCTCGTTATAGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCAT
TGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAA
AATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGC
TGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCGCTGG
TAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTC
AAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGAC
TAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCA
AAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTCGT
CAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAAC
TGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCC
AGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGT
TAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTT
TAAATAGAT
Length of full length seq. 1149