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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM252
Library AF
(Link to library)
Clone ID AFM252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM252P
(Link to Original site)
Representative DNA sequence 
>AFM252 (AFM252Q) /CSM/AF/AFM2-C/AFM252Q.Seq.d/
AAAAAAATGCAAGATATAAGTGATAGTAATGATGAAGATATAAATAAAAATAATACCACA
ACAACCACTACTACCTCTTCAACTAATATACAATCAAATTCAACACCATTATCAAGTAGA
AGGAGAAGAACTCCAACAGTAACAACACCACCCACCAAACAAAAAGGTGGATATCCTAAA
GAAGAGCAAGATGAAGAATTTGATGAAGATGTAGATATTGAAGAGGAAGAAGAGGAGGAA
GATATATCATCAGAACCATCCGAGGACGATGACGATGATGAAGATTACGACGATGGTGGT
AGTAAAAGGAAGAGAAAATCAAAGAAACAAAAACAACAAGAGGAAGAAGAAGAAGCAGCA
GTAGCAGCAGCATCAGCAGCAACGTCTAATCGAAATATCATATTTGATGAAAACGGTAAC
GAGATATACGAAGACGAGGGTGACGACGAGGGCGACGAAGAGGAGGACGAGGAGGAGGAC
GAAGAAATGGACGAGGAGGGCGACGAAGAGGAGGATGAGGAGGATGATGAAGACXXXXXX
XXXXACTATTCAAAACGTTTATGCATCGAATTGGATTACCCTGAATGGTTTGAATTTATG
ATCNCCAATTCAATAGCAAATCAAATCATNTATGGTAAAAGCATCATTAAAGAATTTCGT
AAAATNTTACCAAAATTAAAACAAATATTTAAAGAATGTATAGTAACAATTAGTTTAGAT
TTAAATGTAAATGGTCTTTACTTAAAAGATAGATTCGAATGGGATATCATTGGTCCAAAT
TTACCTGAATCATTTGCAAAATCAATTTCAATGGATTTAGGTTTATCAANAGAATTTGAA
AATATTATTGTTTATTCAATTAGAGAACAAATTCAAACTCATTATAGTCAAATTACNCAA
CAATATAATTTAAATCCAAATGGATTTAGATATTATTCATCAATGAGAAATCAACCAATT
CATCATGATCAAATATTAAGAAATGACTATCAATTAACTTATTTCACNCCAACCATTAGT
TATAGACAACCTCCAAAGGTGGGGGGATATGATCCNCCAACAGCTTATTTCATTCAACAA
AATCATCTTAGACAACAAACTCTTCAACAACAACAACAATTAAAANATCAATTAAGAACT
TCAACTANACAACAACAACAACATCAACAACATCCNCAACAATTTGTTCGTTAAAAAACT
AAAAAAAAAAAGACAGC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
KKMQDISDSNDEDINKNNTTTTTTTSSTNIQSNSTPLSSRRRRTPTVTTPPTKQKGGYPK
EEQDEEFDEDVDIEEEEEEEDISSEPSEDDDDDEDYDDGGSKRKRKSKKQKQQEEEEEAA
VAAASAATSNRNIIFDENGNEIYEDEGDDEGDEEEDEEEDEEMDEEGDEEEDEEDDED--
-

---YSKRLCIELDYPEWFEFMIXNSIANQIXYGKSIIKEFRKXLPKLKQIFKECIVTISL
DLNVNGLYLKDRFEWDIIGPNLPESFAKSISMDLGLSXEFENIIVYSIREQIQTHYSQIT
QQYNLNPNGFRYYSSMRNQPIHHDQILRNDYQLTYFTPTISYRQPPKVGGYDPPTAYFIQ
QNHLRQQTLQQQQQLKXQLRTSTXQQQQHQQHPQQFVR*ktkkkkt
Translated Amino Acid sequence (All Frames) 
Frame A:
KKMQDISDSNDEDINKNNTTTTTTTSSTNIQSNSTPLSSRRRRTPTVTTPPTKQKGGYPK
EEQDEEFDEDVDIEEEEEEEDISSEPSEDDDDDEDYDDGGSKRKRKSKKQKQQEEEEEAA
VAAASAATSNRNIIFDENGNEIYEDEGDDEGDEEEDEEEDEEMDEEGDEEEDEEDDED--
-

---tiqnvyasnwitlnglnl*spiq*qiksxmvkaslknfvkxyqn*nkylknv**qlv
*i*m*mvft*kidsngislvqiylnhlqnqfqwi*vyqxnlkillfiqlenkfkliivkl
xnnii*iqmdldiihq*einqfimiky*emtin*lisxqplvidnlqrwgdmixqqlisf
nkiildnklfnnnnn*xin*elqlxnnnninnixnnlfvkklkkkrq

Frame B:
kkcki*vivmmki*ikiipqqpllplqliynqiqhhyqvegeelqq*qhhppnkkvdilk
kskmknlmkm*ilkrkkrrkiyhqnhprtmtmmkittmvvvkgrenqrnknnkrkkkkqq
*qqhqqqrlieisylmktvtrytktrvttratkrrtrrrtkkwtrratkrrmrrmmk---

---lfktfmhriglp*mv*iydxqfnsksnhxw*khh*ris*nxtkiktni*rmysnn*f
rfkckwsllkr*irmgyhwskft*iickinfngfrfixri*kyyclfn*rtnsnsl*sny
xti*fkskwi*ilfinekstnss*snikk*lsinlfhxnh*l*ttskgggi*sxnslfhs
tkss*ttnssttttikxsiknfnxtttttsttsxticslkn*kkkds

Frame C:
knaryk*****ryk*k*yhnnhyylfn*ytikfntiik*keknsnsnntthqtkrwis*r
rar*ri**rcry*rgrrggryiirtirgr*r**rlrrww**keekiketkttrgrrrsss
sssissnv*skyhi**kr*rdirrrg*rrgrrrggrgggrrngrggrrrgg*gg**r---

---YSKRLCIELDYPEWFEFMIXNSIANQIXYGKSIIKEFRKXLPKLKQIFKECIVTISL
DLNVNGLYLKDRFEWDIIGPNLPESFAKSISMDLGLSXEFENIIVYSIREQIQTHYSQIT
QQYNLNPNGFRYYSSMRNQPIHHDQILRNDYQLTYFTPTISYRQPPKVGGYDPPTAYFIQ
QNHLRQQTLQQQQQLKXQLRTSTXQQQQHQQHPQQFVR*ktkkkkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD323 (CHD323Q) /CSM/CH/CHD3-A/CHD323Q.Seq.d/                       1049   0.0
AFM252 (AFM252Q) /CSM/AF/AFM2-C/AFM252Q.Seq.d/                       1049   0.0
AFK112 (AFK112Q) /CSM/AF/AFK1-A/AFK112Q.Seq.d/                       1049   0.0
AFJ392 (AFJ392Q) /CSM/AF/AFJ3-D/AFJ392Q.Seq.d/                       1037   0.0
SFE356 (SFE356Q) /CSM/SF/SFE3-C/SFE356Q.Seq.d/                        888   0.0
VFF134 (VFF134Q) /CSM/VF/VFF1-B/VFF134Q.Seq.d/                        878   0.0
SLD833 (SLD833Q) /CSM/SL/SLD8-B/SLD833Q.Seq.d/                        803   0.0
SFB156 (SFB156Q) /CSM/SF/SFB1-C/SFB156Q.Seq.d/                        569   e-161
SLD835 (SLD835Q) /CSM/SL/SLD8-B/SLD835Q.Seq.d/                        365   1e-99
VSF333 (VSF333Q) /CSM/VS/VSF3-B/VSF333Q.Seq.d/                         48   3e-04
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ376356) Dictyostelium discoideum cDNA clone:ddc28n05, 3' ...   977   0.0    1
(BJ346928) Dictyostelium discoideum cDNA clone:dda25g14, 3' ...   977   0.0    1
(BJ344945) Dictyostelium discoideum cDNA clone:dda21g03, 3' ...   977   0.0    1
(BJ344591) Dictyostelium discoideum cDNA clone:dda19h23, 3' ...   965   0.0    1
(BJ400312) Dictyostelium discoideum cDNA clone:dds9p13, 3' e...   888   0.0    1
(BJ428249) Dictyostelium discoideum cDNA clone:ddv11c09, 3' ...   797   0.0    2
(AU052719) Dictyostelium discoideum slug cDNA, clone SLD833.      613   0.0    5
(BJ329585) Dictyostelium discoideum cDNA clone:dda25g14, 5' ...   339   e-131  3
(BJ363732) Dictyostelium discoideum cDNA clone:ddc28n05, 5' ...   331   e-126  3
(BJ387609) Dictyostelium discoideum cDNA clone:dds3o13, 5' e...   331   e-126  3
dna update 2009. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382138_496(CR382138|pid:none) Debaryomyces hansenii strain CBS...    57   2e-06
S43599(S43599)Snf5 homolog R07E5.3 - Caenorhabditis elegans            56   3e-06
E88427(E88427) protein R07E5.3 [imported] - Caenorhabditis elega...    56   3e-06
CR380958_80(CR380958|pid:none) Candida glabrata strain CBS138 ch...    55   4e-06
U04847_1(U04847|pid:none) Human Ini1 mRNA, complete cds.               54   8e-06
(Q5ZK40) RecName: Full=SWI/SNF-related matrix-associated actin-d...    54   8e-06
AK024025_1(AK024025|pid:none) Homo sapiens cDNA FLJ13963 fis, cl...    54   8e-06
(Q5BIN2) RecName: Full=SWI/SNF-related matrix-associated actin-d...    54   8e-06
AB017343_1(AB017343|pid:none) Mus musculus mRNA for Integrase in...    54   8e-06
(Q12824) RecName: Full=SWI/SNF-related matrix-associated actin-d...    54   8e-06
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM252 is

5' end seq. ID AFM252F
5' end seq. 
>AFM252F.Seq
AAAAAAATGCAAGATATAAGTGATAGTAATGATGAAGATATAAATAAAAATAATACCACA
ACAACCACTACTACCTCTTCAACTAATATACAATCAAATTCAACACCATTATCAAGTAGA
AGGAGAAGAACTCCAACAGTAACAACACCACCCACCAAACAAAAAGGTGGATATCCTAAA
GAAGAGCAAGATGAAGAATTTGATGAAGATGTAGATATTGAAGAGGAAGAAGAGGAGGAA
GATATATCATCAGAACCATCCGAGGACGATGACGATGATGAAGATTACGACGATGGTGGT
AGTAAAAGGAAGAGAAAATCAAAGAAACAAAAACAACAAGAGGAAGAAGAAGAAGCAGCA
GTAGCAGCAGCATCAGCAGCAACGTCTAATCGAAATATCATATTTGATGAAAACGGTAAC
GAGATATACGAAGACGAGGGTGACGACGAGGGCGACGAAGAGGAGGACGAGGAGGAGGAC
GAAGAAATGGACGAGGAGGGCGACGAAGAGGAGGATGAGGAGGATGATGAAGACXXXXXX
XXXX
Length of 5' end seq. 544
3' end seq. ID AFM252Z
3' end seq. 
>AFM252Z.Seq
XXXXXXXXXXACTATTCAAAACGTTTATGCATCGAATTGGATTACCCTGAATGGTTTGAA
TTTATGATCNCCAATTCAATAGCAAATCAAATCATNTATGGTAAAAGCATCATTAAAGAA
TTTCGTAAAATNTTACCAAAATTAAAACAAATATTTAAAGAATGTATAGTAACAATTAGT
TTAGATTTAAATGTAAATGGTCTTTACTTAAAAGATAGATTCGAATGGGATATCATTGGT
CCAAATTTACCTGAATCATTTGCAAAATCAATTTCAATGGATTTAGGTTTATCAANAGAA
TTTGAAAATATTATTGTTTATTCAATTAGAGAACAAATTCAAACTCATTATAGTCAAATT
ACNCAACAATATAATTTAAATCCAAATGGATTTAGATATTATTCATCAATGAGAAATCAA
CCAATTCATCATGATCAAATATTAAGAAATGACTATCAATTAACTTATTTCACNCCAACC
ATTAGTTATAGACAACCTCCAAAGGTGGGGGGATATGATCCNCCAACAGCTTATTTCATT
CAACAAAATCATCTTAGACAACAAACTCTTCAACAACAACAACAATTAAAANATCAATTA
AGAACTTCAACTANACAACAACAACAACATCAACAACATCCNCAACAATTTGTTCGTTAA
AAAACTAAAAAAAAAAAGACAGC
Length of 3' end seq. 683
Connected seq. ID AFM252P
Connected seq. 
>AFM252P.Seq
AAAAAAATGCAAGATATAAGTGATAGTAATGATGAAGATATAAATAAAAATAATACCACA
ACAACCACTACTACCTCTTCAACTAATATACAATCAAATTCAACACCATTATCAAGTAGA
AGGAGAAGAACTCCAACAGTAACAACACCACCCACCAAACAAAAAGGTGGATATCCTAAA
GAAGAGCAAGATGAAGAATTTGATGAAGATGTAGATATTGAAGAGGAAGAAGAGGAGGAA
GATATATCATCAGAACCATCCGAGGACGATGACGATGATGAAGATTACGACGATGGTGGT
AGTAAAAGGAAGAGAAAATCAAAGAAACAAAAACAACAAGAGGAAGAAGAAGAAGCAGCA
GTAGCAGCAGCATCAGCAGCAACGTCTAATCGAAATATCATATTTGATGAAAACGGTAAC
GAGATATACGAAGACGAGGGTGACGACGAGGGCGACGAAGAGGAGGACGAGGAGGAGGAC
GAAGAAATGGACGAGGAGGGCGACGAAGAGGAGGATGAGGAGGATGATGAAGAC------
----ACTATTCAAAACGTTTATGCATCGAATTGGATTACCCTGAATGGTTTGAATTTATG
ATCNCCAATTCAATAGCAAATCAAATCATNTATGGTAAAAGCATCATTAAAGAATTTCGT
AAAATNTTACCAAAATTAAAACAAATATTTAAAGAATGTATAGTAACAATTAGTTTAGAT
TTAAATGTAAATGGTCTTTACTTAAAAGATAGATTCGAATGGGATATCATTGGTCCAAAT
TTACCTGAATCATTTGCAAAATCAATTTCAATGGATTTAGGTTTATCAANAGAATTTGAA
AATATTATTGTTTATTCAATTAGAGAACAAATTCAAACTCATTATAGTCAAATTACNCAA
CAATATAATTTAAATCCAAATGGATTTAGATATTATTCATCAATGAGAAATCAACCAATT
CATCATGATCAAATATTAAGAAATGACTATCAATTAACTTATTTCACNCCAACCATTAGT
TATAGACAACCTCCAAAGGTGGGGGGATATGATCCNCCAACAGCTTATTTCATTCAACAA
AATCATCTTAGACAACAAACTCTTCAACAACAACAACAATTAAAANATCAATTAAGAACT
TCAACTANACAACAACAACAACATCAACAACATCCNCAACAATTTGTTCGTTAAAAAACT
AAAAAAAAAAAGACAGC
Length of connected seq. 1207
Full length Seq ID -
Full length Seq. -
Length of full length seq. -