VFC570
Library VF
(Link to library)
Clone ID VFC570
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15322-1
Original site URL
Representative seq. ID VFC570P
(Link to Original site)
Representative DNA sequence
>VFC570 (VFC570Q) /CSM/VF/VFC5-C/VFC570Q.Seq.d/
ATACGCAGAAGAAAAAAAAAGAAATGAAAAATATATTATTACTCGGTTCTGGCTTTGTTG
CAAAGCCAGCACTTGATTACCTCTTAAAAAGAGAAGATTATTTTGTAACAATTGTTAGTT
TATTCCAAAATGAATTAGACTCAATTACAAAAGGTCACGATACATCAAAATTCAAAACAA
TTCAATTAGATGTTATGAATAAATTGAATGAATTAGAAGAATATTTCCCAAAATCTGATT
GTGTAATTAGTTTAATTCCAGCAACATTACATTCAACAGTTGCAAAATTATGTATTAAAC
ATAAAACACATTTAGTTACAGCAAGTTATATTTCAGATGATATGAAAGCATTATCAGAAG
AAGCAAAGGAGGCAGGTGTTTTATTATTGAATGAACTTGGTCTTGATCCAGGTATTGATC
ATATGTCATCAATGAAGATTATTGATCATGCTAAGGAAAATGGTGGTAAGGTCACATCAT
TCGTTTCATGGTGTGGTGCGCTACCATCAACAGAATGTGCTGACAATCCATTTGGATACA
AATTTTCATGGTCACCAAGAGXXXXXXXXXXAGGTACATTACGTTGGAAGGGTGGTTTTG
GAATCATGATCCGTGCACTTGTTGCCGTTGGTTTATTCTCCACTGAAGGTTGATGCACGT
CTCGCTGTTGAGGGTGGTATTTCATGGCGTAACTATCTCGTTCAGCTATTGGGTTGCAAT
GATAATGATAGTGACCTCCTATATTGTGTGGAATCCACCATTAAAGAGTACTTTGAAAAA
TTAAAGACTGAGAGAGACGGCTTACAATTCCATTTCCCAATTATTCCAAGAGATATTGAA
AAAGATGTTCAACATGCCGTTGAAGGTTTCAAATGGTTGGGTTTATTAAGTGCTGATGAA
AAAGTTGTAAATAAGAATACTCCAATCGATAGTCTTTGCGCTTTACTCGAAAAGAAACTC
TCTTACAAAGCTGGTGAACGTGATGTAGTTGTCCTTGAACATAACTTTGTCGTCCAATAC
GCTGATCGTACAGAAAAAGAAGTTTCATCACTCATTTGTTATGGTATTCCAAATGGTAGT
TCTGCAACTTCACTCACTGTTGGTGTTCCAGTTGGTATCGCAACTGAACTCATCGCTGAT
GGTAAAACTACAACTAGAGGTGTTGTTGGTCCAGTAACTCCTGAATTTTATTTACCAATT
TTAGAGAAATTAAAATCNAAAATATTAAANATNAAACTAAACAAGAAATTAAAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
TQKKKKEMKNILLLGSGFVAKPALDYLLKREDYFVTIVSLFQNELDSITKGHDTSKFKTI
QLDVMNKLNELEEYFPKSDCVISLIPATLHSTVAKLCIKHKTHLVTASYISDDMKALSEE
AKEAGVLLLNELGLDPGIDHMSSMKIIDHAKENGGKVTSFVSWCGALPSTECADNPFGYK
FSWSPR---

---GTLRWKGGFGIMIRALVAVGLFSTEG*ctsrc*gwyfma*lsrsaiglq*****ppi
lcgihh*rvl*kikd*errltipfpnyskry*krcstcr*rfqmvgfikc**ksck*eys
nr*slrftrketllqsw*t*cscp*t*lcrpir*syrkrsfithllwyskw*fcnfthcw
csswyrn*thr*w*nyn*rccwssns*ilftnfreikixnikxxtkqeikk


Translated Amino Acid sequence (All Frames)
Frame A:
irrrkkkk*kiyyysvlallqsqhlits*kekiil*qllvyskmn*tqlqkvtihqnskq
fn*ml*in*mn*knisqnliv*lv*fqqhyiqqlqnyvlnikhi*lqqvifqmi*khyqk
kqrrqvfyy*mnlvliqvliichq*rllimlrkmvvrshhsfhgvvryhqqnvltihldt
nfhghqe---

---ryitlegwfwnhdpctccrwfilh*rlmhvsllrvvfhgvtisfsywvamimivtsy
ivwnpplkstlkn*rlretaynsisqlfqeilkkmfnmplkvsngwvy*vlmkkl*iril
qsivfalyskrnsltklvnvm*lslnitlssntlivqkkkfhhsfvmvfqmvvlqlhsll
vfqlvsqlnsslmvklqlevllvq*llnfiyqf*rn*nxky*xxn*trn*k

Frame B:
yaeekkrnekyiitrfwlcckast*lplkkrrlfcnnc*fipk*irlnykrsryikiqnn
sircye*ie*irrifpki*lcn*fnssnitfnsckimy*t*ntfsysklyfr*yesiirr
skggrcfiie*tws*sry*syvinedy*sc*gkww*ghiirfmvwcatinrmc*qsiwiq
ifmvtk---

---GTLRWKGGFGIMIRALVAVGLFSTEG*ctsrc*gwyfma*lsrsaiglq*****ppi
lcgihh*rvl*kikd*errltipfpnyskry*krcstcr*rfqmvgfikc**ksck*eys
nr*slrftrketllqsw*t*cscp*t*lcrpir*syrkrsfithllwyskw*fcnfthcw
csswyrn*thr*w*nyn*rccwssns*ilftnfreikixnikxxtkqeikk

Frame C:
TQKKKKEMKNILLLGSGFVAKPALDYLLKREDYFVTIVSLFQNELDSITKGHDTSKFKTI
QLDVMNKLNELEEYFPKSDCVISLIPATLHSTVAKLCIKHKTHLVTASYISDDMKALSEE
AKEAGVLLLNELGLDPGIDHMSSMKIIDHAKENGGKVTSFVSWCGALPSTECADNPFGYK
FSWSPR---

---vhyvgrvvles*svhllplvysplkvdarlaveggiswrnylvqllgcndndsdlly
cvestikeyfeklkterdglqfhfpiiprdiekdvqhavegfkwlgllsadekvvnkntp
idslcallekklsykagerdvvvlehnfvvqyadrtekevsslicygipngssatsltvg
vpvgiateliadgktttrgvvgpvtpefylpileklkskilxxklnkklkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC570 (VFC570Q) /CSM/VF/VFC5-C/VFC570Q.Seq.d/ 2288 0.0
VFL645 (VFL645Q) /CSM/VF/VFL6-B/VFL645Q.Seq.d/ 1239 0.0
VFJ362 (VFJ362Q) /CSM/VF/VFJ3-C/VFJ362Q.Seq.d/ 1239 0.0
VFC723 (VFC723Q) /CSM/VF/VFC7-A/VFC723Q.Seq.d/ 1239 0.0
SFE805 (SFE805Q) /CSM/SF/SFE8-A/SFE805Q.Seq.d/ 1239 0.0
CFI658 (CFI658Q) /CSM/CF/CFI6-C/CFI658Q.Seq.d/ 1239 0.0
AFO224 (AFO224Q) /CSM/AF/AFO2-A/AFO224Q.Seq.d/ 1239 0.0
AFO144 (AFO144Q) /CSM/AF/AFO1-B/AFO144Q.Seq.d/ 1239 0.0
AFH782 (AFH782Q) /CSM/AF/AFH7-D/AFH782Q.Seq.d/ 1239 0.0
AFF496 (AFF496Q) /CSM/AF/AFF4-D/AFF496Q.Seq.d/ 1239 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL394098|AL394098.1 T3 end of clone AR0AA015A07 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 46 0.001 2
AZ928392|AZ928392.1 479.dif09b09.s1 Saccharomyces kluyveri Saccharomyces kluyveri genomic clone 479.dif09b09.s1, DNA sequence. 40 0.002 2
AX594978|AX594978.1 Sequence 632 from Patent EP1258494. 52 0.017 1
X77363|X77363.1 S.cerevisiae LYS9 gene. 52 0.017 1
Z71665|Z71665.1 S.cerevisiae chromosome XIV reading frame ORF YNR050c. 52 0.017 1
AC138524|AC138524.1 Homo sapiens chromosome 5 clone XXyac-4X104D9, WORKING DRAFT SEQUENCE, 308 unordered pieces. 52 0.017 1
AX573242|AX573242.1 Sequence 88 from Patent WO02074992. 46 0.20 4
AL499626|AL499626.5 Human DNA sequence from clone RP3-381A2 on chromosome 6. 48 0.27 1
AL591849|AL591849.7 Human DNA sequence from clone RP11-321G1 on chromosome Xq22.3-24. 36 0.93 3
AC022375|AC022375.2 Homo sapiens chromosome 3, WORKING DRAFT SEQUENCE, 21 unordered pieces. 46 1.1 1
dna update 2003. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54NG9) RecName: Full=Probable saccharopine dehydrogenase [NADP... 363 e-102
BC073642_1(BC073642|pid:none) Xenopus laevis MGC82978 protein, m... 169 1e-40
FM992690_618(FM992690|pid:none) Candida dubliniensis CD36 chromo... 167 7e-40
(A8E657) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ... 165 3e-39
AY751465_1(AY751465|pid:none) Oncorhynchus mykiss lysine ketoglu... 164 6e-39
AM989986_8(AM989986|pid:none) Zygosaccharomyces rouxii strain CB... 164 8e-39
CR382130_918(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 163 1e-38
(A2VCW9) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ... 160 7e-38
CR382138_765(CR382138|pid:none) Debaryomyces hansenii strain CBS... 160 9e-38
(P38999) RecName: Full=Saccharopine dehydrogenase [NADP+, L-glut... 159 3e-37
protein update 2009. 6.18
PSORT

psg: 0.94 gvh: 0.46 alm: 0.33 top: 0.33 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for VFC570 is cyt

5' end seq. ID VFC570F
5' end seq.
>VFC570F.Seq
ATACGCAGAAGAAAAAAAAAGAAATGAAAAATATATTATTACTCGGTTCTGGCTTTGTTG
CAAAGCCAGCACTTGATTACCTCTTAAAAAGAGAAGATTATTTTGTAACAATTGTTAGTT
TATTCCAAAATGAATTAGACTCAATTACAAAAGGTCACGATACATCAAAATTCAAAACAA
TTCAATTAGATGTTATGAATAAATTGAATGAATTAGAAGAATATTTCCCAAAATCTGATT
GTGTAATTAGTTTAATTCCAGCAACATTACATTCAACAGTTGCAAAATTATGTATTAAAC
ATAAAACACATTTAGTTACAGCAAGTTATATTTCAGATGATATGAAAGCATTATCAGAAG
AAGCAAAGGAGGCAGGTGTTTTATTATTGAATGAACTTGGTCTTGATCCAGGTATTGATC
ATATGTCATCAATGAAGATTATTGATCATGCTAAGGAAAATGGTGGTAAGGTCACATCAT
TCGTTTCATGGTGTGGTGCGCTACCATCAACAGAATGTGCTGACAATCCATTTGGATACA
AATTTTCATGGTCACCAAGAG----------
Length of 5' end seq. 561
3' end seq. ID VFC570Z
3' end seq.
>VFC570Z.Seq
----------AGGTACATTACGTTGGAAGGGTGGTTTTGGAATCATGATCCGTGCACTTG
TTGCCGTTGGTTTATTCTCCACTGAAGGTTGATGCACGTCTCGCTGTTGAGGGTGGTATT
TCATGGCGTAACTATCTCGTTCAGCTATTGGGTTGCAATGATAATGATAGTGACCTCCTA
TATTGTGTGGAATCCACCATTAAAGAGTACTTTGAAAAATTAAAGACTGAGAGAGACGGC
TTACAATTCCATTTCCCAATTATTCCAAGAGATATTGAAAAAGATGTTCAACATGCCGTT
GAAGGTTTCAAATGGTTGGGTTTATTAAGTGCTGATGAAAAAGTTGTAAATAAGAATACT
CCAATCGATAGTCTTTGCGCTTTACTCGAAAAGAAACTCTCTTACAAAGCTGGTGAACGT
GATGTAGTTGTCCTTGAACATAACTTTGTCGTCCAATACGCTGATCGTACAGAAAAAGAA
GTTTCATCACTCATTTGTTATGGTATTCCAAATGGTAGTTCTGCAACTTCACTCACTGTT
GGTGTTCCAGTTGGTATCGCAACTGAACTCATCGCTGATGGTAAAACTACAACTAGAGGT
GTTGTTGGTCCAGTAACTCCTGAATTTTATTTACCAATTTTAGAGAAATTAAAATCNAAA
ATATTAAANATNAAACTAAACAAGAAATTAAAAAAT
Length of 3' end seq. 686
Connected seq. ID VFC570P
Connected seq.
>VFC570P.Seq
ATACGCAGAAGAAAAAAAAAGAAATGAAAAATATATTATTACTCGGTTCTGGCTTTGTTG
CAAAGCCAGCACTTGATTACCTCTTAAAAAGAGAAGATTATTTTGTAACAATTGTTAGTT
TATTCCAAAATGAATTAGACTCAATTACAAAAGGTCACGATACATCAAAATTCAAAACAA
TTCAATTAGATGTTATGAATAAATTGAATGAATTAGAAGAATATTTCCCAAAATCTGATT
GTGTAATTAGTTTAATTCCAGCAACATTACATTCAACAGTTGCAAAATTATGTATTAAAC
ATAAAACACATTTAGTTACAGCAAGTTATATTTCAGATGATATGAAAGCATTATCAGAAG
AAGCAAAGGAGGCAGGTGTTTTATTATTGAATGAACTTGGTCTTGATCCAGGTATTGATC
ATATGTCATCAATGAAGATTATTGATCATGCTAAGGAAAATGGTGGTAAGGTCACATCAT
TCGTTTCATGGTGTGGTGCGCTACCATCAACAGAATGTGCTGACAATCCATTTGGATACA
AATTTTCATGGTCACCAAGAG----------AGGTACATTACGTTGGAAGGGTGGTTTTG
GAATCATGATCCGTGCACTTGTTGCCGTTGGTTTATTCTCCACTGAAGGTTGATGCACGT
CTCGCTGTTGAGGGTGGTATTTCATGGCGTAACTATCTCGTTCAGCTATTGGGTTGCAAT
GATAATGATAGTGACCTCCTATATTGTGTGGAATCCACCATTAAAGAGTACTTTGAAAAA
TTAAAGACTGAGAGAGACGGCTTACAATTCCATTTCCCAATTATTCCAAGAGATATTGAA
AAAGATGTTCAACATGCCGTTGAAGGTTTCAAATGGTTGGGTTTATTAAGTGCTGATGAA
AAAGTTGTAAATAAGAATACTCCAATCGATAGTCTTTGCGCTTTACTCGAAAAGAAACTC
TCTTACAAAGCTGGTGAACGTGATGTAGTTGTCCTTGAACATAACTTTGTCGTCCAATAC
GCTGATCGTACAGAAAAAGAAGTTTCATCACTCATTTGTTATGGTATTCCAAATGGTAGT
TCTGCAACTTCACTCACTGTTGGTGTTCCAGTTGGTATCGCAACTGAACTCATCGCTGAT
GGTAAAACTACAACTAGAGGTGTTGTTGGTCCAGTAACTCCTGAATTTTATTTACCAATT
TTAGAGAAATTAAAATCNAAAATATTAAANATNAAACTAAACAAGAAATTAAAAAAT
Length of connected seq. 1247
Full length Seq ID -
Full length Seq. -
Length of full length seq. -