VFC556
Library VF
(Link to library)
Clone ID VFC556
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09660-1
Original site URL
Representative seq. ID VFC556Z
(Link to Original site)
Representative DNA sequence
>VFC556 (VFC556Q) /CSM/VF/VFC5-C/VFC556Q.Seq.d/
XXXXXXXXXXAATGNTTTATTCATTTATTACCTCCCATTCNCTTANGGTGATTAANAATT
AAAACNNCTTTTTGCTCCATATGGTAATGTAATAAGCNCNAAAGTTTTCATTGATAAGAA
TACNCAACNATCTAAATGNTTTGGTTTTGGATCTTATGATAACNCNCAATCAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---xlfiyylpfxxgd*XLKXLFAPYGNVISXKVFIDKNTQXSKXFGFGSYDNXQS


Translated Amino Acid sequence (All Frames)
Frame A:
---mxysfitshslxvixn*nxfllhmvm**axkfslirixnxlnxlvldlmitxnq


Frame B:
---xfihllppixlx*lxiktxfcsiw*cnkxxsfh**eyxti*mxwfwil**xxi


Frame C:
---xlfiyylpfxxgd*XLKXLFAPYGNVISXKVFIDKNTQXSKXFGFGSYDNXQS


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC556 (VFC556Q) /CSM/VF/VFC5-C/VFC556Q.Seq.d/ 246 9e-65
AFN136 (AFN136Q) /CSM/AF/AFN1-B/AFN136Q.Seq.d/ 224 3e-58
VSE353 (VSE353Q) /CSM/VS/VSE3-C/VSE353Q.Seq.d/ 222 1e-57
VFM584 (VFM584Q) /CSM/VF/VFM5-D/VFM584Q.Seq.d/ 222 1e-57
VFL496 (VFL496Q) /CSM/VF/VFL4-D/VFL496Q.Seq.d/ 222 1e-57
VFL443 (VFL443Q) /CSM/VF/VFL4-B/VFL443Q.Seq.d/ 222 1e-57
VFL435 (VFL435Q) /CSM/VF/VFL4-B/VFL435Q.Seq.d/ 222 1e-57
VFI818 (VFI818Q) /CSM/VF/VFI8-A/VFI818Q.Seq.d/ 222 1e-57
SSM582 (SSM582Q) /CSM/SS/SSM5-D/SSM582Q.Seq.d/ 222 1e-57
SLG627 (SLG627Q) /CSM/SL/SLG6-B/SLG627Q.Seq.d/ 222 1e-57

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB344209|CB344209.2 CA48EN0001_IaF_F08 Cabernet Sauvignon Leaf-CA48EN Vitis vinifera cDNA clone CA48EN0001_IaF_F08 5', mRNA sequence. 32 0.99 2
BH592160|BH592160.1 BOHBT52TF BOHB Brassica oleracea genomic clone BOHBT52, DNA sequence. 40 8.0 1
U95808|U95808.1 Oryctolagus cuniculus GRO mRNA, complete cds. 40 8.0 1
BH986872|BH986872.1 oei82h09.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 40 8.0 1
AZ534763|AZ534763.1 ENTCF77TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 40 8.0 1
AA842435|AA842435.1 MBAFCW8C11T3 Brugia malayi adult female cDNA (SAW96MLW-BmAF) Brugia malayi cDNA clone AFCW8C11 5', mRNA sequence. 40 8.0 1
BH161626|BH161626.1 ENTSA17TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 40 8.0 1
AQ947500|AQ947500.1 Sheared DNA-39L12.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-39L12, genomic survey sequence. 40 8.0 1
AL492071|AL492071.1 T. brucei sheared genomic DNA clone 331h08, reverse sequence. 40 8.0 1
AZ551370|AZ551370.1 ENTEK19TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 40 8.0 1
dna update 2003. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9IBD0) RecName: Full=CUG-BP- and ETR-3-like factor 1; ... 65 6e-10
BC049453_1(BC049453|pid:none) Danio rerio CUG triplet repeat, RN... 65 6e-10
(Q5F3T7) RecName: Full=CUG-BP- and ETR-3-like factor 1; ... 65 7e-10
AB384673_1(AB384673|pid:none) Synthetic construct DNA, clone: pF... 65 7e-10
AK014492_1(AK014492|pid:none) Mus musculus 14 days embryo liver ... 65 7e-10
AL672241_9(AL672241|pid:none) Mouse DNA sequence from clone RP23... 65 7e-10
EF520343_1(EF520343|pid:none) Gallus gallus CUG binding protein ... 65 7e-10
AK156725_1(AK156725|pid:none) Mus musculus activated spleen cDNA... 65 7e-10
AK304430_1(AK304430|pid:none) Homo sapiens cDNA FLJ61559 complet... 65 7e-10
BC151433_1(BC151433|pid:none) Bos taurus CUG triplet repeat, RNA... 65 7e-10
protein update 2009. 6.18
PSORT

psg: 0.82 gvh: 0.39 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for VFC556 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFC556Z
3' end seq.
>VFC556Z.Seq
----------AATGNTTTATTCATTTATTACCTCCCATTCNCTTANGGTGATTAANAATT
AAAACNNCTTTTTGCTCCATATGGTAATGTAATAAGCNCNAAAGTTTTCATTGATAAGAA
TACNCAACNATCTAAATGNTTTGGTTTTGGATCTTATGATAACNCNCAATCAG
Length of 3' end seq. 163
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -