>VFC553 (VFC553Q) /CSM/VF/VFC5-C/VFC553Q.Seq.d/
XXXXXXXXXXGCAACTCCATTAGTTAAATTGGGTGCCCCTATCCNTGAGAAATTGGGTTA
CTGTGATGAAGTACTCGTTGAAGAGATCGGTTCAACCAAATGTTGTATTTTCCGTCAAAA
TAAAGAAGAAAGTGAAATCTCCACCATTGTAGTTCGTGGTTCAACCAATAACATTCTCGA
TGATATTGAACGTGCCATCGATGATGGTGTCAACGTTTTCAAAGGTATGTGTAAAGATGG
TAGATTCTTAGCTGGTGCTGGTGCTTTTGAAATTGAAGCCTCACGTAAACTCCAAGCTTT
TGCCGATGCTACACCAGGTCTCTCTCAATATTCAATTCGTCAATACGCTGAAGCTTTCGA
AATCATTCCAAGAACTCTTGCTGAAACTAGTGGTCACGACTCCTCAAAAGCAATCTCAAA
TATTTATGCAGCTCATACCAAAGGTAATACCAATTATGGTTTAGATATTGAATCTGGTCA
ACCAAAATCTGTACTCGAAATGGATGTTTTAGACGCTTTTGCTTCAAAACTTTTCGCAAT
TAAATTAGCTACAAACACTGCTAACACCGTTTTAAGAGTCGATCAAATCATTATGTCTAA
ACCAGCTGGGGTCCAAAACCACCAAAAATGGGTCCAACC

---TPLVKLGAPIXEKLGYCDEVLVEEIGSTKCCIFRQNKEESEISTIVVRGSTNNILDD
IERAIDDGVNVFKGMCKDGRFLAGAGAFEIEASRKLQAFADATPGLSQYSIRQYAEAFEI
IPRTLAETSGHDSSKAISNIYAAHTKGNTNYGLDIESGQPKSVLEMDVLDAFASKLFAIK
LATNTANTVLRVDQIIMSKPAGVQNHQKWVQ

Frame A:
---qlh*lnwvplsxrnwvtvmkyslkrsvqpnvvfsvkikkkvksppl*fvvqpitfsm
ilnvpsmmvstfskvcvkmvds*lvlvllklkphvnskllpmlhqvslniqfvntlklsk
sfqelllklvvttpqkqsqifmqlipkvipimv*ilnlvnqnlyskwmf*tlllqnfsql
n*lqtlltpf*esikslclnqlgskttkngsn


Frame B:
---nsis*igcpyp*eigll**str*rdrfnqmlyfpsk*rrk*nlhhcsswfnq*hsr*
y*tchr*wcqrfqryv*rw*ilswcwcf*n*slt*tpsfcrcytrslsifnssir*sfrn
hsknsc*n*wsrllksnlkylcssyqr*yqlwfry*iwstkictrngcfrrfcfktfrn*
isykhc*hrfksrsnhyv*tswgpkppkmgpt


Frame C:
---TPLVKLGAPIXEKLGYCDEVLVEEIGSTKCCIFRQNKEESEISTIVVRGSTNNILDD
IERAIDDGVNVFKGMCKDGRFLAGAGAFEIEASRKLQAFADATPGLSQYSIRQYAEAFEI
IPRTLAETSGHDSSKAISNIYAAHTKGNTNYGLDIESGQPKSVLEMDVLDAFASKLFAIK
LATNTANTVLRVDQIIMSKPAGVQNHQKWVQ

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC553 (VFC553Q) /CSM/VF/VFC5-C/VFC553Q.Seq.d/                       1241   0.0
VSH847 (VSH847Q) /CSM/VS/VSH8-B/VSH847Q.Seq.d/                       1233   0.0
VFE342 (VFE342Q) /CSM/VF/VFE3-B/VFE342Q.Seq.d/                       1233   0.0
VFC658 (VFC658Q) /CSM/VF/VFC6-C/VFC658Q.Seq.d/                       1233   0.0
VFB696 (VFB696Q) /CSM/VF/VFB6-D/VFB696Q.Seq.d/                       1233   0.0
SFB643 (SFB643Q) /CSM/SF/SFB6-B/SFB643Q.Seq.d/                       1233   0.0
CFF166 (CFF166Q) /CSM/CF/CFF1-C/CFF166Q.Seq.d/                       1233   0.0
AFO380 (AFO380Q) /CSM/AF/AFO3-D/AFO380Q.Seq.d/                       1233   0.0
AFM724 (AFM724Q) /CSM/AF/AFM7-A/AFM724Q.Seq.d/                       1233   0.0
AFJ704 (AFJ704Q) /CSM/AF/AFJ7-A/AFJ704Q.Seq.d/                       1233   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.  1174  0.0  2
AW332428|AW332428.1 S8D2 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    42  1e-05  3
AW335478|AW335478.1 S47F10 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    42  2e-05  3
AF136446|AF136446.1 Tetrahymena pyriformis chaperonin-containing-TCP1 theta subunit (CCTtheta) gene, complete cds.    58  1e-04  1
CC819983|CC819983.1 1O0006D22R Oxytricha plasmid UUGC1O library Sterkiella histriomuscorum genomic clone UUGC1O0006D22 R, genomic survey sequence.    42  2e-04  3
BB409385|BB409385.1 Mus musculus 7 days embryo cDNA, RIKEN full-length enriched library, clone:C430013O04, 3' end partial sequence, similar to ddbj:Z37164 M.musculus Cctq mRNA encoding cytosolic chaperone containing TCP-1, theta subunit (CCTtheta).    52  0.009  1
AV364477|AV364477.1 Mus musculus 15 days embryo embryonic body below diaphragm cDNA, RIKEN full-length enriched library, clone:8230402C21, 3' end partial sequence, similar to ddbj:Z37164 M.musculus Cctq mRNA encoding cytosolic chaperone containing TCP-1, theta subunit (CCTtheta).    50  0.034  1
BD003904|BD003904.1 Polynucleotide of Streptococcus pneumoniae and sequence.    38  0.043  3
AR218992|AR218992.1 Sequence 224 from patent US 6420135.          38  0.043  3
BI505471|BI505471.1 BB170030A10H05.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170030A10H05 5', mRNA sequence.    36  0.098  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_86(AC116979|pid:none) Dictyostelium discoideum chromoso...   388   e-108
AF442548_1(AF442548|pid:none) Physarum polycephalum CCT chaperon...   279   2e-74
(Q3ZCI9) RecName: Full=T-complex protein 1 subunit theta;       ...   223   4e-57
(P42932) RecName: Full=T-complex protein 1 subunit theta;       ...   222   6e-57
AB022161_1(AB022161|pid:none) Mus musculus Cctq gene for chapero...   222   6e-57
AK145918_1(AK145918|pid:none) Mus musculus 14 days pregnant adul...   222   6e-57
AK222490_1(AK222490|pid:none) Homo sapiens mRNA for chaperonin c...   222   8e-57
D42052_1(D42052|pid:none) Homo sapiens cosmid Q7A10 (D21S246) in...   222   8e-57
BC050492_1(BC050492|pid:none) Danio rerio chaperonin containing ...   214   2e-54
(Q6EE31) RecName: Full=T-complex protein 1 subunit theta;       ...   213   5e-54

 psg: 0.66  gvh: 0.23  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VFC553 is cyt

>VFC553Z.Seq
----------GCAACTCCATTAGTTAAATTGGGTGCCCCTATCCNTGAGAAATTGGGTTA
CTGTGATGAAGTACTCGTTGAAGAGATCGGTTCAACCAAATGTTGTATTTTCCGTCAAAA
TAAAGAAGAAAGTGAAATCTCCACCATTGTAGTTCGTGGTTCAACCAATAACATTCTCGA
TGATATTGAACGTGCCATCGATGATGGTGTCAACGTTTTCAAAGGTATGTGTAAAGATGG
TAGATTCTTAGCTGGTGCTGGTGCTTTTGAAATTGAAGCCTCACGTAAACTCCAAGCTTT
TGCCGATGCTACACCAGGTCTCTCTCAATATTCAATTCGTCAATACGCTGAAGCTTTCGA
AATCATTCCAAGAACTCTTGCTGAAACTAGTGGTCACGACTCCTCAAAAGCAATCTCAAA
TATTTATGCAGCTCATACCAAAGGTAATACCAATTATGGTTTAGATATTGAATCTGGTCA
ACCAAAATCTGTACTCGAAATGGATGTTTTAGACGCTTTTGCTTCAAAACTTTTCGCAAT
TAAATTAGCTACAAACACTGCTAACACCGTTTTAAGAGTCGATCAAATCATTATGTCTAA
ACCAGCTGGGGTCCAAAACCACCAAAAATGGGTCCAACC